Wall clock time and date at job start Tue Mar 31 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00157 * 2 1 4 4 C 1.53005 * 109.47379 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46961 * 184.99999 * 4 3 2 6 6 O 1.45198 * 109.47010 * 65.00052 * 4 3 2 7 7 C 1.34221 * 116.99903 * 150.00214 * 6 4 3 8 8 O 1.20826 * 120.00367 * 359.97438 * 7 6 4 9 9 C 1.50706 * 120.00092 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99907 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99654 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47022 * 89.99986 * 15 13 11 17 17 H 1.48502 * 109.46769 * 209.99494 * 15 13 11 18 18 H 1.48495 * 109.47280 * 329.99669 * 15 13 11 19 19 C 1.50703 * 109.46762 * 305.00187 * 4 3 2 20 20 N 1.29022 * 124.91573 * 74.69910 * 19 4 3 21 21 C 1.31785 * 117.11992 * 179.81259 * 20 19 4 22 22 C 1.33629 * 114.50475 * 0.46892 * 21 20 19 23 23 S 1.70971 * 124.91512 * 254.99693 * 19 4 3 24 24 H 1.08999 * 109.46931 * 59.99862 * 1 2 3 25 25 H 1.09000 * 109.47469 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47222 * 300.00117 * 1 2 3 27 27 H 1.09001 * 109.47084 * 60.00311 * 3 2 1 28 28 H 1.09001 * 109.47533 * 300.00387 * 3 2 1 29 29 H 1.09001 * 109.46953 * 299.99668 * 9 7 6 30 30 H 1.09000 * 109.47318 * 59.99266 * 9 7 6 31 31 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 32 32 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 33 33 H 0.96999 * 119.99682 * 180.02562 * 14 13 11 34 34 H 1.08010 * 122.74357 * 180.22245 * 21 20 19 35 35 H 1.07997 * 126.04217 * 179.79221 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9784 2.1765 0.0902 6 8 3.9728 0.5695 -1.2398 7 6 5.1840 0.9199 -1.6998 8 8 5.8565 1.7147 -1.0866 9 6 5.7049 0.3229 -2.9818 10 6 7.0967 0.8851 -3.2777 11 6 7.6177 0.2877 -4.5593 12 1 7.0162 -0.4218 -5.1082 13 6 8.8621 0.6475 -5.0319 14 7 9.3165 0.1265 -6.1506 15 14 9.9022 1.8752 -4.0831 16 1 10.7563 1.1509 -3.1078 17 1 10.7624 2.6306 -5.0290 18 1 9.0150 2.8199 -3.3582 19 6 3.9714 0.3327 1.1649 20 7 3.8526 -0.9506 1.2263 21 6 4.2898 -1.5428 2.3193 22 6 4.7972 -0.7119 3.2347 23 16 4.6883 0.9276 2.5985 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 5.7654 -0.7607 -2.8797 30 1 5.0297 0.5735 -3.8000 31 1 7.0366 1.9687 -3.3797 32 1 7.7716 0.6340 -2.4594 33 1 10.1920 0.3794 -6.4829 34 1 4.2385 -2.6118 2.4651 35 1 5.2029 -0.9952 4.1947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291461809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:52 Heat of formation + Delta-G solvation = -83.793418 kcal Electronic energy + Delta-G solvation = -20092.067555 eV Core-core repulsion = 16796.823332 eV Total energy + Delta-G solvation = -3295.244224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50808 -39.43562 -37.98423 -36.25133 -33.62379 -32.33067 -31.29669 -29.39015 -26.88244 -26.34449 -25.28561 -22.98643 -21.92176 -20.20733 -19.38365 -18.49916 -17.61048 -16.88158 -16.53917 -16.13160 -15.96426 -15.59869 -15.38902 -14.60963 -14.26679 -14.13448 -13.78985 -13.59929 -12.98553 -12.66606 -12.55072 -12.51063 -11.84602 -11.61489 -11.49884 -11.41365 -11.02828 -10.84671 -10.31851 -10.16904 -9.97909 -9.84597 -9.71621 -9.57003 -9.47907 -9.24523 -9.03886 -8.54494 -6.05900 -4.05570 0.55096 1.19370 1.60444 2.63071 2.73662 3.01842 3.34900 3.41649 3.50456 3.53253 3.91629 4.47122 4.60547 4.74566 4.91465 4.97162 5.05591 5.14950 5.17336 5.24365 5.28773 5.36973 5.49862 5.53617 6.00683 6.02779 6.06258 6.45853 6.73523 6.96364 7.24611 7.32004 7.70837 7.72436 8.15836 8.48525 8.96898 9.55820 11.06765 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.004274 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.997574 B = 6549.616680 C = 7289.702961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.072 3.928 4 C 0.168 3.832 5 H 0.116 0.884 6 O -0.326 6.326 7 C 0.455 3.545 8 O -0.511 6.511 9 C -0.094 4.094 10 C -0.001 4.001 11 C -0.526 4.526 12 H 0.076 0.924 13 C 0.071 3.929 14 N -0.900 5.900 15 Si 0.876 3.124 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.262 1.262 19 C 0.030 3.970 20 N -0.426 5.426 21 C 0.038 3.962 22 C -0.258 4.258 23 S 0.125 5.875 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.026 0.974 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.177 0.823 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.709 1.907 19.100 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C -0.006 4.006 4 C 0.109 3.891 5 H 0.133 0.867 6 O -0.243 6.243 7 C 0.299 3.701 8 O -0.398 6.398 9 C -0.131 4.131 10 C -0.039 4.039 11 C -0.564 4.564 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.186 1.186 19 C -0.249 4.249 20 N -0.140 5.140 21 C -0.114 4.114 22 C -0.398 4.398 23 S 0.379 5.621 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.194 0.806 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.214 2.697 19.093 25.193 hybrid contribution 0.533 -0.128 0.779 0.953 sum -15.680 2.570 19.872 25.443 Atomic orbital electron populations 1.22753 0.81436 1.02901 0.99592 1.88172 1.18962 1.25428 1.95236 1.22566 0.89673 0.86759 1.01645 1.21129 0.93820 0.94789 0.79368 0.86660 1.86862 1.35748 1.65087 1.36599 1.24968 0.78356 0.79009 0.87727 1.90605 1.57124 1.33231 1.58827 1.21555 1.00151 1.02061 0.89362 1.19482 0.89780 0.97050 0.97552 1.21034 1.02625 1.26709 1.06053 0.90601 1.24948 0.97495 0.95888 0.94718 1.69904 1.19131 1.43853 1.20992 0.86813 0.80626 0.82236 0.79986 1.20190 1.21301 1.18595 1.27115 1.03325 0.94164 1.00253 1.66194 1.16532 1.07669 1.23636 1.21948 0.99114 1.01870 0.88499 1.27152 1.11157 0.94947 1.06495 1.83992 1.56068 1.09832 1.12196 0.93978 0.89519 0.94531 0.91324 0.91016 0.88181 0.88135 0.95578 0.96133 0.92610 0.80622 0.80496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.36 -4.61 9.76 -38.79 -0.38 -4.98 16 3 C 0.07 0.79 5.81 37.16 0.22 1.00 16 4 C 0.17 2.36 2.87 -27.88 -0.08 2.28 16 5 H 0.12 1.50 7.15 -51.93 -0.37 1.13 16 6 O -0.33 -5.59 9.83 -42.00 -0.41 -6.00 16 7 C 0.46 8.78 7.92 36.01 0.29 9.06 16 8 O -0.51 -10.80 15.20 -18.75 -0.29 -11.08 16 9 C -0.09 -1.90 5.75 -27.88 -0.16 -2.06 16 10 C 0.00 -0.03 3.33 -27.89 -0.09 -0.12 16 11 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 12 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 14 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 15 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 18 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 19 C 0.03 0.44 5.96 -13.46 -0.08 0.36 16 20 N -0.43 -6.57 10.02 -11.86 -0.12 -6.69 16 21 C 0.04 0.46 11.35 -19.19 -0.22 0.24 16 22 C -0.26 -2.72 11.37 29.12 0.33 -2.39 16 23 S 0.13 1.47 23.18 -107.50 -2.49 -1.03 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 31 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 32 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.18 1.68 8.06 -52.48 -0.42 1.25 16 35 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -34.86 321.90 -6.37 -41.23 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.53 Total: -3.29 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 0.88 Total: -3.61 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.65 Total: -33.71 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.08 Total: -22.07 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.86 -6.37 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291461809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.564 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds