Wall clock time and date at job start Tue Mar 31 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00157 * 2 1 4 4 C 1.53005 * 109.47379 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.46961 * 184.99999 * 4 3 2 6 6 O 1.45198 * 109.47010 * 65.00052 * 4 3 2 7 7 C 1.34221 * 116.99903 * 150.00214 * 6 4 3 8 8 O 1.20826 * 120.00367 * 359.97438 * 7 6 4 9 9 C 1.50706 * 120.00092 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99907 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99654 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47022 * 89.99986 * 15 13 11 17 17 H 1.48502 * 109.46769 * 209.99494 * 15 13 11 18 18 H 1.48495 * 109.47280 * 329.99669 * 15 13 11 19 19 C 1.50703 * 109.46762 * 305.00187 * 4 3 2 20 20 N 1.29022 * 124.91573 * 74.69910 * 19 4 3 21 21 C 1.31785 * 117.11992 * 179.81259 * 20 19 4 22 22 C 1.33629 * 114.50475 * 0.46892 * 21 20 19 23 23 S 1.70971 * 124.91512 * 254.99693 * 19 4 3 24 24 H 1.08999 * 109.46931 * 59.99862 * 1 2 3 25 25 H 1.09000 * 109.47469 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47222 * 300.00117 * 1 2 3 27 27 H 1.09001 * 109.47084 * 60.00311 * 3 2 1 28 28 H 1.09001 * 109.47533 * 300.00387 * 3 2 1 29 29 H 1.09001 * 109.46953 * 299.99668 * 9 7 6 30 30 H 1.09000 * 109.47318 * 59.99266 * 9 7 6 31 31 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 32 32 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 33 33 H 0.96999 * 119.99682 * 180.02562 * 14 13 11 34 34 H 1.08010 * 122.74357 * 180.22245 * 21 20 19 35 35 H 1.07997 * 126.04217 * 179.79221 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9784 2.1765 0.0902 6 8 3.9728 0.5695 -1.2398 7 6 5.1840 0.9199 -1.6998 8 8 5.8565 1.7147 -1.0866 9 6 5.7049 0.3229 -2.9818 10 6 7.0967 0.8851 -3.2777 11 6 7.6177 0.2877 -4.5593 12 1 7.0162 -0.4218 -5.1082 13 6 8.8621 0.6475 -5.0319 14 7 9.3165 0.1265 -6.1506 15 14 9.9022 1.8752 -4.0831 16 1 10.7563 1.1509 -3.1078 17 1 10.7624 2.6306 -5.0290 18 1 9.0150 2.8199 -3.3582 19 6 3.9714 0.3327 1.1649 20 7 3.8526 -0.9506 1.2263 21 6 4.2898 -1.5428 2.3193 22 6 4.7972 -0.7119 3.2347 23 16 4.6883 0.9276 2.5985 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 5.7654 -0.7607 -2.8797 30 1 5.0297 0.5735 -3.8000 31 1 7.0366 1.9687 -3.3797 32 1 7.7716 0.6340 -2.4594 33 1 10.1920 0.3794 -6.4829 34 1 4.2385 -2.6118 2.4651 35 1 5.2029 -0.9952 4.1947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291461809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:51 Heat of formation + Delta-G solvation = -107.261519 kcal Electronic energy + Delta-G solvation = -20093.085208 eV Core-core repulsion = 16796.823332 eV Total energy + Delta-G solvation = -3296.261877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81044 -40.50963 -38.89099 -37.57713 -35.64877 -33.66223 -33.02220 -30.29241 -28.46079 -27.44571 -26.15010 -24.37637 -23.25148 -21.77223 -20.58185 -19.47473 -19.33833 -18.44724 -17.55548 -17.45754 -17.10539 -16.52271 -16.39496 -16.26752 -15.73933 -15.19826 -15.12488 -14.81607 -14.52781 -14.31931 -13.81716 -13.45188 -13.29464 -12.95752 -12.78463 -12.47623 -12.35165 -12.24819 -12.05215 -12.03609 -11.79934 -11.49763 -11.41664 -10.79387 -10.63475 -10.54010 -10.40560 -9.94224 -8.32067 -6.36687 -0.37254 0.28419 0.70804 1.14319 1.34572 1.36096 1.50024 1.59801 1.92793 2.34463 2.73770 2.98481 3.03168 3.65879 3.71265 3.92501 4.12276 4.24126 4.33594 4.35074 4.37814 4.45102 4.51616 4.54238 4.61999 4.81230 4.89591 5.14178 5.21609 5.30168 5.34485 5.57238 6.20784 6.22840 6.64955 6.73194 6.81583 7.28331 8.83697 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.004274 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.997574 B = 6549.616680 C = 7289.702961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.073 3.927 4 C 0.158 3.842 5 H 0.122 0.878 6 O -0.330 6.330 7 C 0.466 3.534 8 O -0.532 6.532 9 C -0.091 4.091 10 C 0.005 3.995 11 C -0.534 4.534 12 H 0.049 0.951 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.940 3.060 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.255 1.255 19 C -0.001 4.001 20 N -0.460 5.460 21 C 0.013 3.987 22 C -0.240 4.240 23 S 0.148 5.852 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.023 0.977 32 H 0.013 0.987 33 H 0.268 0.732 34 H 0.196 0.804 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 2.812 21.344 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.005 4.005 4 C 0.100 3.900 5 H 0.139 0.861 6 O -0.245 6.245 7 C 0.311 3.689 8 O -0.422 6.422 9 C -0.128 4.128 10 C -0.032 4.032 11 C -0.571 4.571 12 H 0.067 0.933 13 C -0.183 4.183 14 N -0.583 5.583 15 Si 0.764 3.236 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.179 1.179 19 C -0.278 4.278 20 N -0.175 5.175 21 C -0.138 4.138 22 C -0.379 4.379 23 S 0.401 5.599 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.213 0.787 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -16.818 3.596 21.343 27.410 hybrid contribution 0.618 -0.486 0.148 0.800 sum -16.200 3.110 21.490 27.091 Atomic orbital electron populations 1.22901 0.79648 1.03519 1.00919 1.88119 1.21019 1.26538 1.95550 1.22692 0.87567 0.86590 1.03651 1.21575 0.95868 0.94726 0.77875 0.86055 1.86804 1.34198 1.65173 1.38375 1.24455 0.78935 0.78426 0.87099 1.90587 1.57952 1.34240 1.59412 1.21332 0.98291 1.02159 0.91065 1.19302 0.92067 0.96608 0.95246 1.21330 1.02515 1.26064 1.07231 0.93292 1.25811 0.98956 0.97873 0.95618 1.70025 1.19928 1.45608 1.22708 0.85810 0.79033 0.79977 0.78824 1.19436 1.20253 1.17882 1.27151 1.04834 0.94331 1.01519 1.66175 1.17450 1.08491 1.25366 1.22316 0.99981 1.03124 0.88370 1.27600 1.09177 0.93945 1.07225 1.83859 1.54989 1.10329 1.10695 0.92942 0.89368 0.92830 0.88417 0.89697 0.87766 0.86592 0.95899 0.96845 0.92251 0.78716 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.39 -9.59 9.76 -145.57 -1.42 -11.01 16 3 C 0.07 1.47 5.81 71.98 0.42 1.89 16 4 C 0.16 4.26 2.87 29.85 0.09 4.34 16 5 H 0.12 3.03 7.15 -2.39 -0.02 3.01 16 6 O -0.33 -11.07 9.83 -48.68 -0.48 -11.55 16 7 C 0.47 17.66 7.92 71.24 0.56 18.22 16 8 O -0.53 -22.08 15.20 21.96 0.33 -21.75 16 9 C -0.09 -3.66 5.75 29.85 0.17 -3.49 16 10 C 0.01 0.26 3.33 29.85 0.10 0.36 16 11 C -0.53 -30.85 9.66 25.60 0.25 -30.60 16 12 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 13 C 0.02 0.91 5.47 84.66 0.46 1.37 16 14 N -0.94 -58.97 13.96 21.45 0.30 -58.67 16 15 Si 0.94 45.78 27.47 68.60 1.88 47.66 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.25 -12.05 6.54 99.48 0.65 -11.40 16 19 C 0.00 -0.02 5.96 88.52 0.53 0.51 16 20 N -0.46 -13.75 10.02 -191.45 -1.92 -15.67 16 21 C 0.01 0.30 11.35 83.65 0.95 1.25 16 22 C -0.24 -4.43 11.37 66.77 0.76 -3.67 16 23 S 0.15 3.17 23.18 -56.49 -1.31 1.86 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 30 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 31 H 0.02 1.13 7.16 -2.39 -0.02 1.12 16 32 H 0.01 0.67 7.53 -2.38 -0.02 0.65 16 33 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 35 H 0.21 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -75.03 321.90 3.96 -71.07 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.04 Total: 6.22 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 5.53 Total: -8.15 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.62 Total: -74.34 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.57 Total: -44.31 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.31 Total: 1.86 kcal Total: -75.03 3.96 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291461809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.195 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds