Wall clock time and date at job start Tue Mar 31 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99537 * 2 1 4 4 C 1.50706 * 109.46854 * 179.97438 * 3 2 1 5 5 N 1.29026 * 124.91499 * 89.97632 * 4 3 2 6 6 C 1.31781 * 117.12417 * 180.02562 * 5 4 3 7 7 C 1.33644 * 114.49886 * 359.97438 * 6 5 4 8 8 C 1.50706 * 126.03326 * 179.73827 * 7 6 5 9 9 O 1.45201 * 109.47071 * 90.00626 * 8 7 6 10 10 C 1.34228 * 116.99938 * 179.97438 * 9 8 7 11 11 O 1.20825 * 120.00027 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99714 * 179.97438 * 10 9 8 13 13 C 1.52998 * 109.46927 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.46927 * 180.02562 * 13 12 10 15 15 H 1.07994 * 120.00222 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99953 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00556 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99882 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47298 * 89.99821 * 18 16 14 20 20 H 1.48506 * 109.47256 * 209.99662 * 18 16 14 21 21 H 1.48498 * 109.47220 * 330.00018 * 18 16 14 22 22 S 1.70976 * 124.91718 * 269.97709 * 4 3 2 23 23 H 1.08994 * 109.47326 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47170 * 300.00107 * 1 2 3 25 25 H 1.09009 * 109.47162 * 59.99770 * 1 2 3 26 26 H 1.09003 * 109.47195 * 60.00463 * 3 2 1 27 27 H 1.08997 * 109.47849 * 299.99827 * 3 2 1 28 28 H 1.07999 * 122.75333 * 179.97438 * 6 5 4 29 29 H 1.09006 * 109.46788 * 210.00009 * 8 7 6 30 30 H 1.08994 * 109.47059 * 330.00264 * 8 7 6 31 31 H 1.08997 * 109.47253 * 300.00041 * 12 10 9 32 32 H 1.09006 * 109.46827 * 59.99952 * 12 10 9 33 33 H 1.08997 * 109.47546 * 300.00300 * 13 12 10 34 34 H 1.09006 * 109.47048 * 60.00526 * 13 12 10 35 35 H 0.96994 * 120.01085 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2491 1.1276 -1.0571 6 6 5.5506 1.0242 -0.8779 7 6 5.9331 0.9947 0.4023 8 6 7.3501 0.8767 0.9016 9 8 7.9197 2.2029 1.0593 10 6 9.1855 2.2740 1.5004 11 8 9.7971 1.2616 1.7470 12 6 9.8437 3.6166 1.6880 13 6 11.2732 3.4172 2.1957 14 6 11.9312 4.7599 2.3839 15 1 11.3845 5.6648 2.1638 16 6 13.2314 4.8329 2.8371 17 7 13.8059 6.0045 3.0009 18 14 14.1773 3.2676 3.2171 19 1 14.8907 2.8118 1.9970 20 1 15.1625 3.5341 4.2959 21 1 13.2310 2.2126 3.6604 22 16 4.4876 1.1101 1.4030 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8465 -0.8899 28 1 6.2507 0.9678 -1.6983 29 1 7.3550 0.3626 1.8628 30 1 7.9424 0.3099 0.1834 31 1 9.8666 4.1463 0.7356 32 1 9.2784 4.2000 2.4148 33 1 11.2500 2.8877 3.1481 34 1 11.8387 2.8337 1.4692 35 1 14.7204 6.0560 3.3200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292244717.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:37 Heat of formation + Delta-G solvation = -90.516011 kcal Electronic energy + Delta-G solvation = -18825.592179 eV Core-core repulsion = 15530.056442 eV Total energy + Delta-G solvation = -3295.535737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35402 -39.90824 -38.23340 -36.45957 -33.66587 -32.61448 -31.43620 -29.74085 -27.08151 -26.47963 -25.23840 -23.73060 -21.90701 -19.95642 -19.85135 -18.60280 -17.63435 -17.05316 -16.81569 -16.50090 -16.16948 -15.95652 -15.48332 -14.78925 -14.45915 -14.18433 -13.93347 -13.64085 -13.08681 -12.85954 -12.70020 -12.58915 -12.32801 -11.93023 -11.70422 -11.48902 -11.05241 -10.63396 -10.37678 -10.31421 -10.22950 -10.08809 -9.93531 -9.80605 -9.55596 -9.28946 -9.23172 -8.57946 -6.09276 -4.09482 0.17596 0.92097 1.39037 2.31396 2.59402 3.05415 3.29150 3.32627 3.39790 3.48344 3.93159 4.44105 4.45328 4.47088 4.73807 4.79958 4.85339 4.90683 4.94313 5.06179 5.19847 5.25275 5.38420 5.43353 5.79140 5.94928 5.97044 6.39956 6.50994 6.68146 7.20018 7.27360 7.35262 7.67804 8.10310 8.44243 8.92899 9.52207 11.03224 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.052564 B = 0.002521 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.553498 B =11104.160141 C =11247.541830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.140 3.860 4 C 0.036 3.964 5 N -0.456 5.456 6 C 0.063 3.937 7 C -0.226 4.226 8 C 0.142 3.858 9 O -0.359 6.359 10 C 0.459 3.541 11 O -0.509 6.509 12 C -0.095 4.095 13 C -0.002 4.002 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 S 0.176 5.824 23 H 0.091 0.909 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.182 0.818 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.224 -11.079 -5.338 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.060 3.940 4 C -0.241 4.241 5 N -0.172 5.172 6 C -0.090 4.090 7 C -0.347 4.347 8 C 0.066 3.934 9 O -0.277 6.277 10 C 0.303 3.697 11 O -0.396 6.396 12 C -0.132 4.132 13 C -0.040 4.040 14 C -0.566 4.566 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.186 1.186 22 S 0.432 5.568 23 H 0.109 0.891 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.199 0.801 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.298 -11.455 -4.638 29.057 hybrid contribution 1.036 -0.690 -0.563 1.366 sum -25.262 -12.145 -5.200 28.509 Atomic orbital electron populations 1.22814 0.79907 1.03363 1.00417 1.87959 1.20381 1.26342 1.95542 1.20796 0.84508 0.86039 1.02635 1.26584 1.00367 1.05260 0.91888 1.66273 1.04858 1.14425 1.31653 1.21814 0.91034 1.00245 0.95918 1.25718 0.99035 1.13236 0.96711 1.20954 0.86585 0.83770 1.02120 1.86651 1.30557 1.32115 1.78387 1.24818 0.78512 0.94117 0.72213 1.90633 1.63896 1.38104 1.46945 1.21575 0.98411 0.88882 1.04367 1.19492 0.89251 0.98292 0.96925 1.21020 0.98397 0.91763 1.45385 0.90626 1.24959 0.97437 0.96071 0.94657 1.69895 1.13846 1.23670 1.46384 0.86800 0.80041 0.84262 0.78466 1.20147 1.21300 1.18609 1.84002 0.96791 1.65088 1.10937 0.89094 0.93612 0.93532 0.90701 0.89871 0.80093 0.89886 0.88839 0.88184 0.88200 0.95573 0.95999 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.44 10.69 -35.23 -0.38 -3.81 16 3 C 0.14 1.11 6.51 36.01 0.23 1.34 16 4 C 0.04 0.38 7.02 -13.45 -0.09 0.29 16 5 N -0.46 -5.59 10.54 -11.86 -0.13 -5.71 16 6 C 0.06 0.72 11.25 -19.18 -0.22 0.51 16 7 C -0.23 -2.62 6.24 -35.92 -0.22 -2.84 16 8 C 0.14 1.79 5.99 36.01 0.22 2.00 16 9 O -0.36 -5.52 10.20 -39.25 -0.40 -5.92 16 10 C 0.46 8.29 7.96 36.01 0.29 8.58 16 11 O -0.51 -10.47 15.73 -18.75 -0.29 -10.76 16 12 C -0.09 -1.81 5.75 -27.88 -0.16 -1.97 16 13 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 14 C -0.53 -14.75 9.66 -34.44 -0.33 -15.08 16 15 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 18 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 22 S 0.18 1.79 23.18 -107.50 -2.49 -0.70 16 23 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.05 0.19 8.14 -51.92 -0.42 -0.24 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.09 1.09 8.13 -51.93 -0.42 0.66 16 31 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 34 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -33.76 325.02 -6.63 -40.39 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.58 Total: -4.95 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.63 Total: -4.10 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.65 Total: -32.36 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -1.07 Total: -20.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.76 -6.63 -40.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292244717.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.130 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds