Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29322 * 1 3 3 Si 1.86794 * 120.00328 * 2 1 4 4 H 1.48500 * 109.46954 * 269.99888 * 3 2 1 5 5 H 1.48502 * 109.46957 * 29.99446 * 3 2 1 6 6 H 1.48496 * 109.47385 * 149.99611 * 3 2 1 7 7 C 1.46809 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 0.02562 * 7 2 1 9 9 N 1.32779 * 120.00062 * 180.02562 * 7 2 1 10 10 C 1.39008 * 120.00313 * 173.33725 * 9 7 2 11 11 C 1.39221 * 119.63663 * 5.83579 * 10 9 7 12 12 C 1.38514 * 119.29239 * 179.75540 * 11 10 9 13 13 C 1.38569 * 118.58275 * 0.50274 * 12 11 10 14 14 N 1.48020 * 120.38134 * 179.71280 * 13 12 11 15 15 O 1.31701 * 120.00201 * 39.41501 * 14 13 12 16 16 O 1.31708 * 119.99770 * 219.41227 * 14 13 12 17 17 C 1.39332 * 119.23100 * 359.73340 * 13 12 11 18 18 C 1.48343 * 119.68217 * 179.97438 * 17 13 12 19 19 C 1.39365 * 120.12372 * 225.68325 * 18 17 13 20 20 C 1.38016 * 119.87022 * 179.79067 * 19 18 17 21 21 C 1.38326 * 120.12374 * 0.48979 * 20 19 18 22 22 C 1.38321 * 120.25153 * 359.73745 * 21 20 19 23 23 C 1.38014 * 120.12385 * 0.02750 * 22 21 20 24 24 N 1.32316 * 119.64272 * 186.10081 * 10 9 7 25 25 H 0.97000 * 119.99598 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99807 * 353.06567 * 9 7 2 27 27 H 1.07993 * 120.35066 * 359.97438 * 11 10 9 28 28 H 1.08002 * 120.70223 * 180.21797 * 12 11 10 29 29 H 1.08001 * 120.06291 * 0.02562 * 19 18 17 30 30 H 1.07996 * 119.93619 * 180.25069 * 20 19 18 31 31 H 1.07997 * 119.87264 * 179.76685 * 21 20 19 32 32 H 1.08005 * 119.93986 * 180.02562 * 22 21 20 33 33 H 1.08003 * 120.06473 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2273 1.6176 0.0000 4 1 2.4748 2.0462 -1.4001 5 1 1.4247 2.6526 0.6999 6 1 3.5248 1.4401 0.7001 7 6 2.0272 -1.2714 0.0006 8 1 1.4871 -2.2068 0.0006 9 7 3.3550 -1.2715 0.0011 10 6 4.0499 -2.4672 0.1413 11 6 3.3516 -3.6715 0.1581 12 6 4.0517 -4.8591 0.2930 13 6 5.4307 -4.8052 0.4179 14 7 6.2178 -6.0494 0.5707 15 8 5.8931 -7.1230 -0.1196 16 8 7.2428 -6.0829 1.3970 17 6 6.0677 -3.5662 0.3984 18 6 7.5435 -3.4968 0.5318 19 6 8.1250 -2.5699 1.3950 20 6 9.4984 -2.5128 1.5184 21 6 10.2978 -3.3664 0.7797 22 6 9.7264 -4.2851 -0.0820 23 6 8.3539 -4.3544 -0.2098 24 7 5.3674 -2.4481 0.2626 25 1 -0.4849 0.8401 -0.0004 26 1 3.8400 -0.4377 -0.1003 27 1 2.2759 -3.6799 0.0634 28 1 3.5333 -5.8065 0.3054 29 1 7.5018 -1.9001 1.9691 30 1 9.9499 -1.7976 2.1900 31 1 11.3723 -3.3157 0.8766 32 1 10.3553 -4.9495 -0.6560 33 1 7.9087 -5.0718 -0.8833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302277518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = 96.032717 kcal Electronic energy + Delta-G solvation = -21298.645386 eV Core-core repulsion = 17908.047809 eV Total energy + Delta-G solvation = -3390.597577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.06733 -38.54682 -37.57723 -36.19354 -33.59497 -33.24075 -32.21140 -31.23772 -30.56894 -28.80156 -26.21022 -24.17698 -23.74291 -22.36279 -21.46216 -20.81135 -19.37730 -17.71953 -17.34928 -16.98193 -16.50823 -15.98231 -15.38571 -15.15003 -14.54653 -14.32629 -14.04183 -13.61129 -13.54325 -13.20772 -13.09448 -12.70863 -12.45931 -12.44716 -12.04973 -11.51960 -11.13294 -11.03706 -10.93690 -10.77977 -10.24412 -10.01305 -9.89344 -9.71154 -9.45566 -9.04040 -8.57396 -8.48665 -7.77774 -7.72762 -4.38027 0.35370 1.34594 1.74853 1.93876 2.18032 2.44194 2.46888 2.48621 2.50477 3.13267 3.69249 3.77703 4.12118 4.49489 4.65703 5.16027 5.21788 5.34536 5.35863 5.63734 5.70594 5.76248 5.88888 5.91388 6.09181 6.21537 6.30541 6.40496 6.50454 6.72399 6.76180 6.82941 6.85758 6.90984 7.19717 7.25002 7.35860 7.93716 7.99690 8.17008 8.74121 9.25250 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019405 B = 0.004957 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.598159 B = 5647.020565 C = 6891.111526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.251 1.251 5 H -0.257 1.257 6 H -0.248 1.248 7 C -0.292 4.292 8 H 0.141 0.859 9 N -0.445 5.445 10 C 0.272 3.728 11 C -0.221 4.221 12 C 0.004 3.996 13 C -0.185 4.185 14 N 0.034 4.966 15 O -0.274 6.274 16 O -0.242 6.242 17 C 0.290 3.710 18 C -0.035 4.035 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.075 4.075 24 N -0.529 5.529 25 H 0.307 0.693 26 H 0.391 0.609 27 H 0.139 0.861 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 3.852 0.130 7.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.167 4.167 3 Si 0.711 3.289 4 H -0.175 1.175 5 H -0.180 1.180 6 H -0.172 1.172 7 C -0.427 4.427 8 H 0.158 0.842 9 N -0.038 5.038 10 C 0.030 3.970 11 C -0.248 4.248 12 C -0.021 4.021 13 C -0.288 4.288 14 N 0.480 4.520 15 O -0.441 6.441 16 O -0.417 6.417 17 C 0.132 3.868 18 C -0.036 4.036 19 C -0.097 4.097 20 C -0.147 4.147 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.095 4.095 24 N -0.249 5.249 25 H 0.120 0.880 26 H 0.226 0.774 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.109 5.288 0.010 8.080 hybrid contribution -0.093 -0.116 0.010 0.149 sum 6.016 5.172 0.020 7.933 Atomic orbital electron populations 1.68560 1.08032 1.32206 1.29364 1.27056 0.95523 0.99990 0.94142 0.86395 0.81109 0.80230 0.81149 1.17495 1.18033 1.17224 1.21102 0.80078 0.96759 1.44758 0.84199 1.40219 1.06425 1.06574 1.50579 1.17603 0.87635 0.85776 1.05987 1.20893 1.00563 0.89807 1.13538 1.20492 0.90209 0.98734 0.92634 1.20052 0.91503 0.81696 1.35559 1.49913 1.00908 1.03005 0.98152 1.96151 1.76606 1.24592 1.46765 1.96175 1.20272 1.92692 1.32553 1.18611 0.91852 0.85430 0.90873 1.18406 0.89683 0.97219 0.98254 1.21083 0.94685 0.96640 0.97267 1.20993 0.93446 0.99971 1.00296 1.21110 0.99437 0.96058 0.96677 1.20896 0.94278 0.99019 0.99546 1.21010 0.93842 0.96697 0.97904 1.66995 1.06645 1.27943 1.23325 0.87983 0.77355 0.84381 0.84991 0.85754 0.86130 0.86340 0.86108 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -15.05 13.88 56.00 0.78 -14.27 16 2 C 0.06 1.10 5.70 -15.14 -0.09 1.02 16 3 Si 0.89 13.86 27.80 -169.99 -4.73 9.13 16 4 H -0.25 -3.87 7.11 56.52 0.40 -3.46 16 5 H -0.26 -3.91 7.11 56.52 0.40 -3.51 16 6 H -0.25 -3.83 6.72 56.52 0.38 -3.45 16 7 C -0.29 -5.81 10.29 -13.68 -0.14 -5.95 16 8 H 0.14 2.91 5.81 -52.48 -0.31 2.60 16 9 N -0.45 -8.57 5.15 -9.92 -0.05 -8.62 16 10 C 0.27 5.55 7.59 -155.05 -1.18 4.37 16 11 C -0.22 -4.35 9.32 -39.11 -0.36 -4.72 16 12 C 0.00 0.09 9.85 -39.36 -0.39 -0.30 16 13 C -0.18 -4.02 6.42 -79.42 -0.51 -4.53 16 14 N 0.03 0.78 3.67 34.22 0.13 0.90 16 15 O -0.27 -6.49 19.76 -31.57 -0.62 -7.11 16 16 O -0.24 -5.66 16.74 -31.57 -0.53 -6.19 16 17 C 0.29 6.08 6.34 -82.96 -0.53 5.56 16 18 C -0.03 -0.67 4.66 -104.90 -0.49 -1.15 16 19 C -0.08 -1.31 9.67 -39.24 -0.38 -1.69 16 20 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 21 C -0.11 -1.55 10.04 -39.52 -0.40 -1.95 16 22 C -0.12 -1.81 10.03 -39.63 -0.40 -2.21 16 23 C -0.08 -1.38 7.16 -39.24 -0.28 -1.66 16 24 N -0.53 -10.96 10.20 -8.94 -0.09 -11.05 16 25 H 0.31 5.38 8.26 -40.82 -0.34 5.04 16 26 H 0.39 6.95 6.16 -40.82 -0.25 6.70 16 27 H 0.14 2.53 5.95 -52.49 -0.31 2.22 16 28 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.11 2.14 7.23 -52.48 -0.38 1.76 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -25.17 298.95 -8.66 -33.83 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -2.52 Total: 14.28 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -5.53 Total: -15.42 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.76 Total: -33.04 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.15 Total: -13.30 kcal Atomic # 14 Polarization: 13.86 SS G_CDS: -4.73 Total: 9.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -25.17 -8.66 -33.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302277518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.866 kcal (2) G-P(sol) polarization free energy of solvation -25.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds