Wall clock time and date at job start Tue Mar 31 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99938 * 2 1 4 4 C 1.53001 * 109.47044 * 180.02562 * 3 2 1 5 5 S 1.81401 * 109.46889 * 179.97438 * 4 3 2 6 6 O 1.42100 * 110.54308 * 64.67104 * 5 4 3 7 7 O 1.42103 * 110.54756 * 287.91909 * 5 4 3 8 8 N 1.65604 * 104.45142 * 176.29475 * 5 4 3 9 9 C 1.39690 * 119.99761 * 292.81243 * 8 5 4 10 10 C 1.39330 * 119.94866 * 284.67499 * 9 8 5 11 11 C 1.38487 * 120.42208 * 180.02562 * 10 9 8 12 12 C 1.37685 * 120.32443 * 359.97438 * 11 10 9 13 13 C 1.40751 * 119.89277 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.20854 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99728 * 332.29781 * 14 13 12 16 16 C 1.39925 * 120.00068 * 152.29374 * 14 13 12 17 17 N 1.30835 * 120.00069 * 348.40987 * 16 14 13 18 18 Si 1.86796 * 120.00068 * 168.41145 * 16 14 13 19 19 H 1.48504 * 109.47242 * 59.99899 * 18 16 14 20 20 H 1.48501 * 109.47432 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47118 * 300.00099 * 18 16 14 22 22 C 1.38275 * 119.95333 * 104.67347 * 9 8 5 23 23 H 1.09002 * 109.47581 * 59.99944 * 1 2 3 24 24 H 1.08996 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47139 * 299.99593 * 1 2 3 26 26 H 1.08996 * 109.47261 * 59.99933 * 3 2 1 27 27 H 1.09000 * 109.47101 * 300.00505 * 3 2 1 28 28 H 1.08997 * 109.47030 * 60.00188 * 4 3 2 29 29 H 1.08993 * 109.46861 * 299.99685 * 4 3 2 30 30 H 0.96990 * 120.00188 * 112.81082 * 8 5 4 31 31 H 1.08001 * 119.79529 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.83748 * 179.97438 * 11 10 9 33 33 H 1.07997 * 120.05201 * 180.02562 * 12 11 10 34 34 H 0.96996 * 119.99756 * 179.97438 * 17 16 14 35 35 H 1.08011 * 120.15923 * 0.27698 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2732 2.8419 -0.0014 6 8 3.9565 3.5293 1.2013 7 8 4.1015 3.4637 -1.2676 8 7 5.9033 2.5686 0.1016 9 6 6.4474 2.0205 1.2656 10 6 6.5920 2.8100 2.4045 11 6 7.1307 2.2769 3.5635 12 6 7.5290 0.9595 3.6030 13 6 7.3891 0.1498 2.4603 14 6 7.7955 -1.2043 2.4936 15 1 8.5825 -1.5154 3.1645 16 6 7.1780 -2.1409 1.6573 17 7 6.0836 -1.8229 1.0148 18 14 7.9162 -3.8452 1.4583 19 1 7.9647 -4.5211 2.7797 20 1 7.0786 -4.6417 0.5260 21 1 9.2920 -3.7280 0.9115 22 6 6.8416 0.6953 1.2858 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6885 1.8464 -0.8899 28 1 3.8567 0.6440 -0.8909 29 1 3.8574 0.6437 0.8891 30 1 6.4802 2.7891 -0.6463 31 1 6.2820 3.8444 2.3833 32 1 7.2388 2.8975 4.4408 33 1 7.9482 0.5482 4.5094 34 1 5.6557 -2.4721 0.4348 35 1 6.7341 0.0836 0.4021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313465478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:21 Heat of formation + Delta-G solvation = -100.702614 kcal Electronic energy + Delta-G solvation = -20658.684501 eV Core-core repulsion = 17362.707040 eV Total energy + Delta-G solvation = -3295.977461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.01242 -37.91449 -36.72796 -35.64576 -34.54281 -33.22670 -31.75788 -29.64084 -27.93685 -26.55200 -25.33392 -23.29907 -21.11668 -20.88805 -18.98289 -17.69354 -17.52343 -16.67246 -16.31124 -15.97014 -15.54880 -15.16301 -14.78524 -14.74674 -14.49169 -13.68809 -13.45839 -12.98601 -12.62318 -12.17141 -12.10685 -11.83441 -11.69216 -11.65561 -11.59347 -11.37058 -11.22127 -11.09555 -10.77295 -10.70796 -10.48622 -10.12117 -9.85158 -9.74307 -9.35140 -9.00299 -7.51763 -7.48739 -6.80560 -4.47872 0.54470 2.60243 2.80435 3.03525 3.05581 3.07862 3.15123 3.70119 3.88331 4.20301 4.51705 4.59735 4.76258 4.94821 5.14618 5.27020 5.29427 5.46245 5.58940 5.67164 6.01265 6.13987 6.27774 6.48305 6.71857 6.95304 7.04818 7.08134 7.17676 7.21129 7.62714 7.74178 7.88032 7.93528 8.17368 8.50929 8.78237 8.81552 10.13755 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.006798 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.025217 B = 4118.126252 C = 5496.217049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.375 6.375 3 C 0.079 3.921 4 C -0.631 4.631 5 S 2.617 3.383 6 O -0.948 6.948 7 O -0.973 6.973 8 N -1.051 6.051 9 C 0.117 3.883 10 C -0.213 4.213 11 C -0.094 4.094 12 C -0.210 4.210 13 C 0.109 3.891 14 C -0.461 4.461 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.801 5.801 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.152 4.152 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.414 0.586 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.282 0.718 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 2.336 -3.410 7.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.001 3.999 4 C -0.758 4.758 5 S 2.710 3.290 6 O -0.938 6.938 7 O -0.963 6.963 8 N -0.806 5.806 9 C 0.023 3.977 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.230 4.230 13 C 0.106 3.894 14 C -0.491 4.491 15 H 0.096 0.904 16 C -0.143 4.143 17 N -0.427 5.427 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.174 4.174 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.174 0.826 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.823 2.867 -3.517 8.194 hybrid contribution 0.371 -1.370 -0.426 1.482 sum -6.451 1.498 -3.942 7.707 Atomic orbital electron populations 1.22809 0.81171 1.02999 1.00079 1.88020 1.19467 1.26537 1.95359 1.22029 0.90494 0.86454 1.00953 1.30749 1.04137 1.26686 1.14264 1.04809 0.73849 0.76437 0.73934 1.93595 1.83231 1.69514 1.47418 1.93559 1.85350 1.73807 1.43581 1.52766 1.24787 1.79664 1.23379 1.17199 1.03062 0.92472 0.84920 1.20688 1.09747 0.98874 0.94204 1.20488 0.99272 0.95254 0.96243 1.21175 1.09406 0.94585 0.97834 1.17487 0.89368 0.92868 0.89717 1.19518 1.17935 0.92281 1.19372 0.90352 1.25866 0.93672 1.01034 0.93705 1.69715 1.13977 1.36654 1.22393 0.86317 0.79920 0.81076 0.79110 1.19054 1.20368 1.18925 1.21647 1.04246 0.91941 0.99584 0.94000 0.89378 0.93802 0.91835 0.92424 0.84288 0.82646 0.74963 0.88097 0.88631 0.88532 0.90694 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.88 10.70 -35.23 -0.38 -6.25 16 3 C 0.08 1.17 5.95 37.16 0.22 1.39 16 4 C -0.63 -10.36 6.45 37.16 0.24 -10.12 16 5 S 2.62 45.34 5.44 -107.50 -0.59 44.75 16 6 O -0.95 -19.00 16.84 -57.54 -0.97 -19.97 16 7 O -0.97 -17.73 18.08 -57.54 -1.04 -18.77 16 8 N -1.05 -18.98 5.59 32.37 0.18 -18.80 16 9 C 0.12 2.51 5.74 -83.86 -0.48 2.03 16 10 C -0.21 -4.66 9.17 -39.08 -0.36 -5.02 16 11 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 12 C -0.21 -4.84 9.79 -38.83 -0.38 -5.22 16 13 C 0.11 2.70 5.56 -106.85 -0.59 2.11 16 14 C -0.46 -11.48 9.06 -37.74 -0.34 -11.83 16 15 H 0.08 1.88 7.87 -52.49 -0.41 1.46 16 16 C 0.07 1.76 5.24 -17.34 -0.09 1.67 16 17 N -0.80 -19.33 10.82 55.55 0.60 -18.73 16 18 Si 0.91 17.99 29.57 -169.99 -5.03 12.97 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 C -0.15 -3.58 8.57 -38.68 -0.33 -3.91 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.14 2.13 8.14 -51.93 -0.42 1.71 16 29 H 0.16 2.91 8.14 -51.93 -0.42 2.49 16 30 H 0.41 6.41 8.92 -34.47 -0.31 6.10 16 31 H 0.10 2.12 7.83 -52.49 -0.41 1.71 16 32 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 34 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 35 H 0.13 3.09 6.18 -52.48 -0.32 2.77 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -29.98 317.12 -8.24 -38.21 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -4.39 Total: 11.73 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -1.40 Total: -29.92 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.78 Total: -37.52 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -2.39 Total: -45.00 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 45.34 SS G_CDS: -0.59 Total: 44.75 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.98 -8.24 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313465478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.489 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds