Wall clock time and date at job start Tue Mar 31 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99938 * 2 1 4 4 C 1.53001 * 109.47044 * 180.02562 * 3 2 1 5 5 S 1.81401 * 109.46889 * 179.97438 * 4 3 2 6 6 O 1.42100 * 110.54308 * 64.67104 * 5 4 3 7 7 O 1.42103 * 110.54756 * 287.91909 * 5 4 3 8 8 N 1.65604 * 104.45142 * 176.29475 * 5 4 3 9 9 C 1.39690 * 119.99761 * 292.81243 * 8 5 4 10 10 C 1.39330 * 119.94866 * 284.67499 * 9 8 5 11 11 C 1.38487 * 120.42208 * 180.02562 * 10 9 8 12 12 C 1.37685 * 120.32443 * 359.97438 * 11 10 9 13 13 C 1.40751 * 119.89277 * 0.02562 * 12 11 10 14 14 C 1.41410 * 120.20854 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99728 * 332.29781 * 14 13 12 16 16 C 1.39925 * 120.00068 * 152.29374 * 14 13 12 17 17 N 1.30835 * 120.00069 * 348.40987 * 16 14 13 18 18 Si 1.86796 * 120.00068 * 168.41145 * 16 14 13 19 19 H 1.48504 * 109.47242 * 59.99899 * 18 16 14 20 20 H 1.48501 * 109.47432 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47118 * 300.00099 * 18 16 14 22 22 C 1.38275 * 119.95333 * 104.67347 * 9 8 5 23 23 H 1.09002 * 109.47581 * 59.99944 * 1 2 3 24 24 H 1.08996 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47139 * 299.99593 * 1 2 3 26 26 H 1.08996 * 109.47261 * 59.99933 * 3 2 1 27 27 H 1.09000 * 109.47101 * 300.00505 * 3 2 1 28 28 H 1.08997 * 109.47030 * 60.00188 * 4 3 2 29 29 H 1.08993 * 109.46861 * 299.99685 * 4 3 2 30 30 H 0.96990 * 120.00188 * 112.81082 * 8 5 4 31 31 H 1.08001 * 119.79529 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.83748 * 179.97438 * 11 10 9 33 33 H 1.07997 * 120.05201 * 180.02562 * 12 11 10 34 34 H 0.96996 * 119.99756 * 179.97438 * 17 16 14 35 35 H 1.08011 * 120.15923 * 0.27698 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2732 2.8419 -0.0014 6 8 3.9565 3.5293 1.2013 7 8 4.1015 3.4637 -1.2676 8 7 5.9033 2.5686 0.1016 9 6 6.4474 2.0205 1.2656 10 6 6.5920 2.8100 2.4045 11 6 7.1307 2.2769 3.5635 12 6 7.5290 0.9595 3.6030 13 6 7.3891 0.1498 2.4603 14 6 7.7955 -1.2043 2.4936 15 1 8.5825 -1.5154 3.1645 16 6 7.1780 -2.1409 1.6573 17 7 6.0836 -1.8229 1.0148 18 14 7.9162 -3.8452 1.4583 19 1 7.9647 -4.5211 2.7797 20 1 7.0786 -4.6417 0.5260 21 1 9.2920 -3.7280 0.9115 22 6 6.8416 0.6953 1.2858 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6885 1.8464 -0.8899 28 1 3.8567 0.6440 -0.8909 29 1 3.8574 0.6437 0.8891 30 1 6.4802 2.7891 -0.6463 31 1 6.2820 3.8444 2.3833 32 1 7.2388 2.8975 4.4408 33 1 7.9482 0.5482 4.5094 34 1 5.6557 -2.4721 0.4348 35 1 6.7341 0.0836 0.4021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313465478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:20 Heat of formation + Delta-G solvation = -121.573566 kcal Electronic energy + Delta-G solvation = -20659.589533 eV Core-core repulsion = 17362.707040 eV Total energy + Delta-G solvation = -3296.882494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.73271 -39.00261 -38.22726 -37.15367 -36.22087 -34.94568 -32.97947 -31.42912 -29.64106 -27.48509 -27.13709 -24.50501 -22.87427 -22.59197 -20.47440 -19.35214 -18.97487 -18.04934 -17.70617 -17.34664 -16.81059 -16.73823 -16.44832 -16.08752 -15.83991 -15.41938 -14.69178 -14.57884 -14.29384 -13.72114 -13.36671 -13.33456 -13.23091 -13.19445 -12.88463 -12.76560 -12.73277 -12.48189 -12.45005 -12.28181 -11.99476 -11.73728 -11.61185 -11.09103 -10.78099 -10.63470 -9.29964 -9.25665 -8.57265 -6.34110 -0.88259 0.86308 1.06702 1.42549 1.51641 1.54389 1.63807 2.23773 2.47200 2.74867 2.97674 3.18434 3.55058 3.65948 3.73555 4.05706 4.35983 4.43748 4.46564 4.53951 4.58975 4.74222 4.79292 4.80679 4.98129 5.16432 5.27106 5.42262 5.59199 5.93822 6.02961 6.06815 6.09429 6.18376 6.40131 6.70446 6.96337 6.99993 8.37697 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.006798 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.025217 B = 4118.126252 C = 5496.217049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.406 6.406 3 C 0.070 3.930 4 C -0.621 4.621 5 S 2.640 3.360 6 O -0.973 6.973 7 O -0.977 6.977 8 N -1.050 6.050 9 C 0.127 3.873 10 C -0.223 4.223 11 C -0.092 4.092 12 C -0.225 4.225 13 C 0.080 3.920 14 C -0.494 4.494 15 H 0.077 0.923 16 C 0.037 3.963 17 N -0.823 5.823 18 Si 0.977 3.023 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.261 1.261 22 C -0.168 4.168 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.131 0.869 30 H 0.426 0.574 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.287 0.713 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 2.292 -3.882 8.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.326 6.326 3 C -0.008 4.008 4 C -0.751 4.751 5 S 2.734 3.266 6 O -0.963 6.963 7 O -0.967 6.967 8 N -0.806 5.806 9 C 0.033 3.967 10 C -0.245 4.245 11 C -0.110 4.110 12 C -0.245 4.245 13 C 0.077 3.923 14 C -0.523 4.523 15 H 0.095 0.905 16 C -0.178 4.178 17 N -0.450 5.450 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.191 4.191 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.166 0.834 29 H 0.150 0.850 30 H 0.264 0.736 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.452 2.856 -3.991 8.923 hybrid contribution 0.486 -1.286 -0.289 1.405 sum -6.965 1.571 -4.280 8.325 Atomic orbital electron populations 1.23096 0.78900 1.04432 1.01593 1.87963 1.22047 1.26899 1.95654 1.22199 0.89096 0.86826 1.02723 1.30610 1.05888 1.25069 1.13536 1.04066 0.73124 0.76297 0.73082 1.93559 1.83480 1.70740 1.48537 1.93551 1.85277 1.74286 1.43595 1.52705 1.25507 1.79432 1.22959 1.17157 1.01905 0.91784 0.85871 1.20968 1.09653 0.99420 0.94470 1.20816 0.97970 0.94990 0.97256 1.21364 1.10024 0.95307 0.97829 1.17860 0.90117 0.93526 0.90751 1.19756 1.18820 0.93041 1.20725 0.90488 1.26601 0.93744 1.04383 0.93040 1.69775 1.14639 1.37908 1.22636 0.85313 0.79126 0.76583 0.79077 1.18783 1.19639 1.18588 1.21592 1.05576 0.92750 0.99135 0.92033 0.88116 0.92730 0.90966 0.89833 0.83397 0.85027 0.73592 0.87072 0.85589 0.87682 0.90244 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -12.23 10.70 -148.98 -1.59 -13.83 16 3 C 0.07 1.96 5.95 71.98 0.43 2.39 16 4 C -0.62 -20.07 6.45 71.98 0.46 -19.61 16 5 S 2.64 88.80 5.44 -56.49 -0.31 88.49 16 6 O -0.97 -38.08 16.84 -127.65 -2.15 -40.23 16 7 O -0.98 -33.96 18.08 -127.65 -2.31 -36.27 16 8 N -1.05 -37.25 5.59 -51.49 -0.29 -37.54 16 9 C 0.13 5.43 5.74 38.16 0.22 5.65 16 10 C -0.22 -9.57 9.17 22.59 0.21 -9.37 16 11 C -0.09 -3.86 10.02 22.20 0.22 -3.64 16 12 C -0.23 -10.42 9.79 22.75 0.22 -10.20 16 13 C 0.08 4.07 5.56 -21.31 -0.12 3.95 16 14 C -0.49 -25.04 9.06 23.46 0.21 -24.82 16 15 H 0.08 3.77 7.87 -2.91 -0.02 3.75 16 16 C 0.04 1.76 5.24 85.25 0.45 2.21 16 17 N -0.82 -40.14 10.82 21.82 0.24 -39.91 16 18 Si 0.98 36.76 29.57 68.60 2.03 38.79 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 C -0.17 -8.06 8.57 22.85 0.20 -7.86 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.15 4.45 8.14 -2.39 -0.02 4.43 16 29 H 0.13 5.00 8.14 -2.39 -0.02 4.98 16 30 H 0.43 12.83 8.92 -96.75 -0.86 11.97 16 31 H 0.11 4.51 7.83 -2.91 -0.02 4.49 16 32 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 35 H 0.12 5.88 6.18 -2.90 -0.02 5.86 16 Total: -1.00 -62.99 317.12 -0.39 -63.38 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.24 Total: 36.84 kcal Atomic # 6 Polarization: -63.48 SS G_CDS: 3.75 Total: -59.73 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -0.05 Total: -77.45 kcal Atomic # 8 Polarization: -84.27 SS G_CDS: -6.05 Total: -90.32 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 16 Polarization: 88.80 SS G_CDS: -0.31 Total: 88.49 kcal Total: -62.99 -0.39 -63.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313465478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.192 kcal (2) G-P(sol) polarization free energy of solvation -62.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds