Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99791 * 2 1 4 4 H 1.48487 * 109.47185 * 274.97159 * 3 2 1 5 5 H 1.48499 * 109.46900 * 34.97258 * 3 2 1 6 6 H 1.48501 * 109.47168 * 154.96948 * 3 2 1 7 7 C 1.39932 * 120.00690 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00474 * 195.67521 * 7 2 1 9 9 C 1.41411 * 119.99568 * 15.67025 * 7 2 1 10 10 C 1.40787 * 120.20657 * 28.96954 * 9 7 2 11 11 C 1.37651 * 119.89055 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32471 * 0.02562 * 11 10 9 13 13 C 1.39286 * 120.42255 * 0.25738 * 12 11 10 14 14 N 1.39817 * 119.94416 * 179.70180 * 13 12 11 15 15 C 1.38031 * 119.99612 * 213.54465 * 14 13 12 16 16 N 1.32683 * 119.03439 * 5.01239 * 15 14 13 17 17 C 1.31947 * 120.90451 * 179.75876 * 16 15 14 18 18 C 1.40177 * 118.99735 * 0.50197 * 17 16 15 19 19 C 1.47421 * 120.86634 * 179.72640 * 18 17 16 20 20 O 1.21515 * 119.99761 * 180.02562 * 19 18 17 21 21 O 1.34750 * 120.00153 * 0.02894 * 19 18 17 22 22 C 1.40168 * 118.26035 * 359.75718 * 18 17 16 23 23 N 1.31943 * 119.00062 * 359.97438 * 22 18 17 24 24 C 1.38313 * 120.09856 * 359.44114 * 13 12 11 25 25 H 0.96999 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.05356 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83478 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.78555 * 179.97438 * 12 11 10 29 29 H 0.96997 * 120.00771 * 33.54763 * 14 13 12 30 30 H 1.07995 * 120.49601 * 180.23919 * 17 16 15 31 31 H 0.96703 * 116.99647 * 179.97438 * 21 19 18 32 32 H 1.08003 * 120.49962 * 180.02562 * 22 18 17 33 33 H 1.08000 * 120.15677 * 180.25360 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3846 2.1071 -1.3947 5 1 1.4961 2.6200 0.8025 6 1 3.5884 1.4123 0.5924 7 6 2.0081 -1.2118 0.0005 8 1 3.0579 -1.2290 0.2532 9 6 1.3405 -2.4138 -0.3297 10 6 0.2392 -2.3946 -1.2066 11 6 -0.4055 -3.5686 -1.5240 12 6 0.0235 -4.7702 -0.9844 13 6 1.1079 -4.8038 -0.1109 14 7 1.5286 -6.0213 0.4327 15 6 2.0497 -6.0633 1.7102 16 7 2.0501 -4.9566 2.4422 17 6 2.5346 -4.9561 3.6695 18 6 3.0628 -6.1447 4.1921 19 6 3.6202 -6.1892 5.5562 20 8 4.0744 -7.2281 5.9932 21 8 3.6258 -5.0780 6.3183 22 6 3.0477 -7.2896 3.3836 23 7 2.5400 -7.2079 2.1685 24 6 1.7725 -3.6354 0.2151 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0987 -1.4603 -1.6301 27 1 -1.2500 -3.5529 -2.1971 28 1 -0.4890 -5.6860 -1.2391 29 1 1.4545 -6.8364 -0.0878 30 1 2.5281 -4.0524 4.2608 31 1 4.0014 -5.1564 7.2060 32 1 3.4449 -8.2247 3.7500 33 1 2.6160 -3.6610 0.8891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313474801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -7.418268 kcal Electronic energy + Delta-G solvation = -20949.533094 eV Core-core repulsion = 17554.449545 eV Total energy + Delta-G solvation = -3395.083549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13599 -39.80128 -38.01340 -36.14302 -35.44249 -33.71233 -33.37169 -31.20738 -29.89504 -28.11247 -25.48482 -24.71147 -24.43126 -21.94428 -20.91298 -20.70487 -18.60141 -17.93832 -17.71580 -17.20298 -16.55553 -15.80090 -15.50379 -14.94739 -14.81499 -14.72514 -14.41767 -13.82300 -13.33721 -13.28190 -12.95268 -12.30281 -12.05180 -11.72766 -11.66092 -11.46552 -11.17232 -10.90210 -10.76671 -10.61819 -10.51376 -10.41354 -9.98776 -9.54097 -9.25103 -8.91494 -8.60029 -7.49846 -6.89813 -6.76263 -4.40324 0.57974 1.27911 2.48690 2.73859 2.83827 2.98339 3.07191 3.10834 3.15032 3.17580 3.92854 3.99860 4.23659 4.59529 4.61520 4.80407 4.92330 5.36195 5.61278 5.77410 6.11440 6.16327 6.29310 6.37372 6.69497 6.84467 6.92853 6.99896 7.11710 7.19085 7.41685 7.62551 7.82719 7.84197 7.93906 8.00834 8.17528 8.46369 8.60277 8.85907 8.89337 10.19546 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.004759 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.650100 B = 5881.812647 C = 7356.065968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.164 4.164 11 C -0.091 4.091 12 C -0.254 4.254 13 C 0.149 3.851 14 N -0.610 5.610 15 C 0.584 3.416 16 N -0.536 5.536 17 C 0.254 3.746 18 C -0.323 4.323 19 C 0.550 3.450 20 O -0.529 6.529 21 O -0.512 6.512 22 C 0.260 3.740 23 N -0.580 5.580 24 C -0.195 4.195 25 H 0.280 0.720 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.417 0.583 30 H 0.180 0.820 31 H 0.413 0.587 32 H 0.178 0.822 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -6.896 6.436 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.184 4.184 11 C -0.110 4.110 12 C -0.276 4.276 13 C 0.057 3.943 14 N -0.233 5.233 15 C 0.230 3.770 16 N -0.257 5.257 17 C 0.082 3.918 18 C -0.334 4.334 19 C 0.395 3.605 20 O -0.419 6.419 21 O -0.324 6.324 22 C 0.090 3.910 23 N -0.302 5.302 24 C -0.216 4.216 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.254 0.746 30 H 0.197 0.803 31 H 0.271 0.729 32 H 0.194 0.806 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.096 -6.796 5.050 9.016 hybrid contribution 0.786 0.321 1.347 1.592 sum 3.882 -6.475 6.397 9.895 Atomic orbital electron populations 1.69814 1.07492 1.29162 1.35627 1.25852 0.94720 1.01123 0.92314 0.86310 0.80597 0.80802 0.79073 1.19422 1.20305 1.18609 1.19511 0.97325 0.90775 1.41404 0.90461 1.17463 0.90912 0.91604 0.88142 1.21304 0.99844 0.96562 1.00682 1.20451 0.98601 0.92588 0.99409 1.20018 1.00952 0.97404 1.09210 1.17415 0.95897 0.83336 0.97633 1.41829 1.60372 1.10898 1.10167 1.19667 0.85507 0.84909 0.86915 1.68617 1.22757 1.27601 1.06677 1.23562 0.82863 0.96516 0.88907 1.20352 1.18319 0.99167 0.95548 1.20243 0.74688 0.80506 0.85057 1.90872 1.45371 1.31965 1.73722 1.84575 1.77421 1.38933 1.31448 1.23035 0.85124 0.96971 0.85914 1.68041 1.19119 1.26836 1.16243 1.20974 1.03944 0.91417 1.05303 0.90912 0.86673 0.88815 0.89113 0.74571 0.80263 0.72857 0.80556 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.12 11.14 55.55 0.62 -19.50 16 2 C 0.08 1.90 5.15 -17.35 -0.09 1.81 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.88 9.04 -37.74 -0.34 -12.22 16 8 H 0.08 1.94 7.89 -52.49 -0.41 1.53 16 9 C 0.12 3.14 5.52 -106.85 -0.59 2.55 16 10 C -0.16 -4.09 8.66 -38.83 -0.34 -4.43 16 11 C -0.09 -2.03 10.02 -39.69 -0.40 -2.43 16 12 C -0.25 -5.36 9.97 -39.09 -0.39 -5.74 16 13 C 0.15 3.21 6.26 -83.80 -0.52 2.68 16 14 N -0.61 -11.03 5.47 -11.71 -0.06 -11.09 16 15 C 0.58 10.48 8.15 -322.86 -2.63 7.85 16 16 N -0.54 -9.97 7.03 -13.61 -0.10 -10.07 16 17 C 0.25 3.82 10.90 -16.77 -0.18 3.64 16 18 C -0.32 -4.39 5.90 -104.71 -0.62 -5.01 16 19 C 0.55 6.77 8.28 34.47 0.29 7.06 16 20 O -0.53 -7.53 17.22 -19.28 -0.33 -7.86 16 21 O -0.51 -4.82 12.77 -40.63 -0.52 -5.34 16 22 C 0.26 3.55 10.87 -16.78 -0.18 3.37 16 23 N -0.58 -9.14 10.44 -13.61 -0.14 -9.28 16 24 C -0.19 -4.64 8.28 -38.68 -0.32 -4.96 16 25 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 26 H 0.12 2.96 6.42 -52.49 -0.34 2.62 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.42 6.34 8.92 -40.82 -0.36 5.97 16 30 H 0.18 2.30 7.70 -52.49 -0.40 1.90 16 31 H 0.41 1.92 9.11 45.56 0.42 2.33 16 32 H 0.18 1.96 7.74 -52.48 -0.41 1.55 16 33 H 0.11 2.61 6.25 -52.49 -0.33 2.28 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -29.94 300.41 -9.17 -39.11 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -1.82 Total: 12.07 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -6.32 Total: -5.84 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.32 Total: -49.94 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.85 Total: -13.19 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.94 -9.17 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313474801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.692 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds