Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99791 * 2 1 4 4 H 1.48487 * 109.47185 * 274.97159 * 3 2 1 5 5 H 1.48499 * 109.46900 * 34.97258 * 3 2 1 6 6 H 1.48501 * 109.47168 * 154.96948 * 3 2 1 7 7 C 1.39932 * 120.00690 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00474 * 195.67521 * 7 2 1 9 9 C 1.41411 * 119.99568 * 15.67025 * 7 2 1 10 10 C 1.40787 * 120.20657 * 28.96954 * 9 7 2 11 11 C 1.37651 * 119.89055 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32471 * 0.02562 * 11 10 9 13 13 C 1.39286 * 120.42255 * 0.25738 * 12 11 10 14 14 N 1.39817 * 119.94416 * 179.70180 * 13 12 11 15 15 C 1.38031 * 119.99612 * 213.54465 * 14 13 12 16 16 N 1.32683 * 119.03439 * 5.01239 * 15 14 13 17 17 C 1.31947 * 120.90451 * 179.75876 * 16 15 14 18 18 C 1.40177 * 118.99735 * 0.50197 * 17 16 15 19 19 C 1.47421 * 120.86634 * 179.72640 * 18 17 16 20 20 O 1.21515 * 119.99761 * 180.02562 * 19 18 17 21 21 O 1.34750 * 120.00153 * 0.02894 * 19 18 17 22 22 C 1.40168 * 118.26035 * 359.75718 * 18 17 16 23 23 N 1.31943 * 119.00062 * 359.97438 * 22 18 17 24 24 C 1.38313 * 120.09856 * 359.44114 * 13 12 11 25 25 H 0.96999 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.05356 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83478 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.78555 * 179.97438 * 12 11 10 29 29 H 0.96997 * 120.00771 * 33.54763 * 14 13 12 30 30 H 1.07995 * 120.49601 * 180.23919 * 17 16 15 31 31 H 0.96703 * 116.99647 * 179.97438 * 21 19 18 32 32 H 1.08003 * 120.49962 * 180.02562 * 22 18 17 33 33 H 1.08000 * 120.15677 * 180.25360 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3846 2.1071 -1.3947 5 1 1.4961 2.6200 0.8025 6 1 3.5884 1.4123 0.5924 7 6 2.0081 -1.2118 0.0005 8 1 3.0579 -1.2290 0.2532 9 6 1.3405 -2.4138 -0.3297 10 6 0.2392 -2.3946 -1.2066 11 6 -0.4055 -3.5686 -1.5240 12 6 0.0235 -4.7702 -0.9844 13 6 1.1079 -4.8038 -0.1109 14 7 1.5286 -6.0213 0.4327 15 6 2.0497 -6.0633 1.7102 16 7 2.0501 -4.9566 2.4422 17 6 2.5346 -4.9561 3.6695 18 6 3.0628 -6.1447 4.1921 19 6 3.6202 -6.1892 5.5562 20 8 4.0744 -7.2281 5.9932 21 8 3.6258 -5.0780 6.3183 22 6 3.0477 -7.2896 3.3836 23 7 2.5400 -7.2079 2.1685 24 6 1.7725 -3.6354 0.2151 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0987 -1.4603 -1.6301 27 1 -1.2500 -3.5529 -2.1971 28 1 -0.4890 -5.6860 -1.2391 29 1 1.4545 -6.8364 -0.0878 30 1 2.5281 -4.0524 4.2608 31 1 4.0014 -5.1564 7.2060 32 1 3.4449 -8.2247 3.7500 33 1 2.6160 -3.6610 0.8891 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313474801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -24.364072 kcal Electronic energy + Delta-G solvation = -20950.267919 eV Core-core repulsion = 17554.449545 eV Total energy + Delta-G solvation = -3395.818374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.36253 -40.84912 -39.64040 -37.11842 -36.94518 -35.14506 -34.92650 -32.53843 -31.68447 -29.73111 -27.26116 -25.96325 -25.70676 -23.15648 -22.65263 -22.24822 -19.85788 -19.42742 -18.97371 -18.22331 -17.96937 -17.25026 -16.83674 -16.47947 -16.40714 -16.08555 -15.75938 -14.97919 -14.84843 -14.63861 -14.45091 -13.95587 -13.71039 -13.22586 -12.89088 -12.77344 -12.60904 -12.51025 -12.26231 -12.09988 -12.00486 -11.78769 -11.56657 -11.25391 -11.01943 -10.20529 -10.08034 -9.31697 -8.60177 -8.50461 -6.31627 -0.61767 0.09220 0.97841 1.08242 1.41451 1.50373 1.54164 1.57136 1.69953 2.10689 2.25149 2.70586 2.83410 3.05060 3.46008 3.56124 3.75971 3.81664 4.41163 4.47627 4.62625 4.65897 4.88033 5.09316 5.15391 5.19410 5.28857 5.40263 5.57706 5.74983 5.83348 5.94072 6.08748 6.14333 6.35669 6.45916 6.71819 6.99223 7.00829 7.03850 7.18686 8.40730 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.004759 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.650100 B = 5881.812647 C = 7356.065968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.497 4.497 8 H 0.070 0.930 9 C 0.094 3.906 10 C -0.190 4.190 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.161 3.839 14 N -0.612 5.612 15 C 0.571 3.429 16 N -0.576 5.576 17 C 0.249 3.751 18 C -0.310 4.310 19 C 0.562 3.438 20 O -0.545 6.545 21 O -0.505 6.505 22 C 0.259 3.741 23 N -0.577 5.577 24 C -0.210 4.210 25 H 0.287 0.713 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.429 0.571 30 H 0.196 0.804 31 H 0.436 0.564 32 H 0.206 0.794 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -7.858 7.504 11.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.175 4.175 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.088 0.912 9 C 0.091 3.909 10 C -0.210 4.210 11 C -0.111 4.111 12 C -0.269 4.269 13 C 0.067 3.933 14 N -0.238 5.238 15 C 0.217 3.783 16 N -0.297 5.297 17 C 0.078 3.922 18 C -0.320 4.320 19 C 0.406 3.594 20 O -0.437 6.437 21 O -0.318 6.318 22 C 0.090 3.910 23 N -0.300 5.300 24 C -0.232 4.232 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.270 0.730 30 H 0.213 0.787 31 H 0.299 0.701 32 H 0.223 0.777 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.539 -7.787 6.186 10.556 hybrid contribution 0.686 0.441 1.186 1.439 sum 4.226 -7.347 7.372 11.233 Atomic orbital electron populations 1.69868 1.08813 1.30332 1.36469 1.26622 0.95442 1.04076 0.91358 0.85250 0.79108 0.76400 0.79284 1.18784 1.19331 1.18479 1.19695 0.97278 0.92133 1.43615 0.91220 1.17776 0.91746 0.92497 0.88872 1.21252 1.00858 0.97008 1.01921 1.20762 0.98861 0.92118 0.99335 1.20392 1.00305 0.98266 1.07964 1.17411 0.95110 0.83966 0.96774 1.41587 1.61323 1.10149 1.10709 1.19759 0.86073 0.85491 0.86981 1.68538 1.24264 1.28637 1.08279 1.23854 0.82399 0.97769 0.88130 1.20497 1.16720 0.98490 0.96303 1.19880 0.74120 0.80748 0.84626 1.90881 1.46084 1.32763 1.73992 1.84526 1.77091 1.37359 1.32873 1.23555 0.84236 0.98098 0.85139 1.68094 1.19003 1.25729 1.17127 1.20964 1.04362 0.92018 1.05828 0.90295 0.88407 0.86178 0.85721 0.73046 0.78703 0.70122 0.77719 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.17 11.14 21.82 0.24 -42.92 16 2 C 0.04 1.98 5.15 85.25 0.44 2.42 16 3 Si 0.98 38.19 29.59 68.60 2.03 40.22 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -26.79 9.04 23.46 0.21 -26.58 16 8 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 9 C 0.09 5.03 5.52 -21.31 -0.12 4.91 16 10 C -0.19 -9.77 8.66 22.75 0.20 -9.58 16 11 C -0.09 -4.05 10.02 22.20 0.22 -3.83 16 12 C -0.25 -10.10 9.97 22.59 0.23 -9.87 16 13 C 0.16 6.87 6.26 38.14 0.24 7.11 16 14 N -0.61 -21.59 5.47 -190.98 -1.04 -22.63 16 15 C 0.57 20.09 8.15 261.50 2.13 22.22 16 16 N -0.58 -21.35 7.03 -196.97 -1.38 -22.74 16 17 C 0.25 7.25 10.90 85.15 0.93 8.18 16 18 C -0.31 -7.81 5.90 -19.92 -0.12 -7.93 16 19 C 0.56 12.32 8.28 70.24 0.58 12.91 16 20 O -0.54 -14.00 17.22 19.79 0.34 -13.66 16 21 O -0.50 -8.01 12.77 -56.60 -0.72 -8.73 16 22 C 0.26 6.50 10.87 85.15 0.93 7.42 16 23 N -0.58 -17.27 10.44 -196.98 -2.06 -19.32 16 24 C -0.21 -10.28 8.28 22.85 0.19 -10.09 16 25 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 26 H 0.10 5.26 6.42 -2.91 -0.02 5.24 16 27 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.43 12.42 8.92 -92.71 -0.83 11.59 16 30 H 0.20 4.82 7.70 -2.91 -0.02 4.80 16 31 H 0.44 2.60 9.11 -74.06 -0.67 1.93 16 32 H 0.21 3.92 7.74 -2.91 -0.02 3.89 16 33 H 0.10 5.04 6.25 -2.91 -0.02 5.03 16 Total: -1.00 -65.86 300.41 3.16 -62.71 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.30 Total: 29.80 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.05 Total: -2.71 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.24 Total: -107.62 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.38 Total: -22.39 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -65.86 3.16 -62.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313474801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.342 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds