Wall clock time and date at job start Tue Mar 31 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 119.99940 * 2 1 4 4 H 1.48493 * 109.47368 * 275.32556 * 3 2 1 5 5 H 1.48505 * 109.47090 * 35.32825 * 3 2 1 6 6 H 1.48496 * 109.47124 * 155.32369 * 3 2 1 7 7 C 1.39926 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00093 * 345.11386 * 7 2 1 9 9 C 1.41407 * 119.99569 * 165.11303 * 7 2 1 10 10 C 1.40790 * 120.21365 * 331.64419 * 9 7 2 11 11 C 1.37645 * 119.89664 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.32696 * 359.74261 * 11 10 9 13 13 C 1.39296 * 120.42447 * 0.51691 * 12 11 10 14 14 N 1.39765 * 119.95530 * 179.75915 * 13 12 11 15 15 C 1.38558 * 119.99813 * 326.78033 * 14 13 12 16 16 C 1.39620 * 120.04202 * 174.46719 * 15 14 13 17 17 C 1.38273 * 118.03230 * 179.97438 * 16 15 14 18 18 C 1.40118 * 117.99362 * 0.02562 * 17 16 15 19 19 C 1.47735 * 120.09863 * 179.97438 * 18 17 16 20 20 O 1.21472 * 119.99965 * 359.97438 * 19 18 17 21 21 O 1.34724 * 120.00191 * 179.72227 * 19 18 17 22 22 N 1.32808 * 119.80325 * 0.24805 * 18 17 16 23 23 N 1.28358 * 122.09579 * 359.47150 * 22 18 17 24 24 C 1.38330 * 120.09390 * 359.48302 * 13 12 11 25 25 H 0.97000 * 119.99617 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.04541 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83545 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.79082 * 180.27332 * 12 11 10 29 29 H 0.96997 * 120.00205 * 146.77498 * 14 13 12 30 30 H 1.07997 * 120.98139 * 359.97438 * 16 15 14 31 31 H 1.07998 * 121.00267 * 180.02562 * 17 16 15 32 32 H 0.96701 * 117.00313 * 180.27686 * 21 19 18 33 33 H 1.07998 * 120.16039 * 180.23167 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3773 2.1115 -1.3939 5 1 1.5006 2.6176 0.8096 6 1 3.5916 1.4104 0.5845 7 6 2.0079 -1.2118 0.0005 8 1 1.4951 -2.1313 0.2412 9 6 3.3864 -1.2325 -0.3141 10 6 3.9329 -0.2556 -1.1681 11 6 5.2755 -0.2822 -1.4704 12 6 6.0939 -1.2627 -0.9342 13 6 5.5664 -2.2389 -0.0920 14 7 6.4003 -3.2266 0.4396 15 6 7.4754 -3.6960 -0.2977 16 6 8.3755 -4.5967 0.2749 17 6 9.4332 -5.0387 -0.4984 18 6 9.5368 -4.5547 -1.8093 19 6 10.6488 -4.9957 -2.6761 20 8 11.4754 -5.7786 -2.2526 21 8 10.7434 -4.5334 -3.9381 22 7 8.6354 -3.6942 -2.2684 23 7 7.6515 -3.2892 -1.5504 24 6 4.2196 -2.2287 0.2235 25 1 -0.4849 0.8401 -0.0004 26 1 3.2995 0.5133 -1.5854 27 1 5.6936 0.4673 -2.1260 28 1 7.1470 -1.2728 -1.1737 29 1 6.2263 -3.5834 1.3246 30 1 8.2494 -4.9382 1.2917 31 1 10.1575 -5.7358 -0.1040 32 1 11.4859 -4.8536 -4.4685 33 1 3.8103 -2.9829 0.8793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313483215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:07 Heat of formation + Delta-G solvation = 2.847110 kcal Electronic energy + Delta-G solvation = -20714.953506 eV Core-core repulsion = 17320.315098 eV Total energy + Delta-G solvation = -3394.638409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29353 -39.97415 -38.35862 -36.30762 -35.95052 -33.56704 -33.18761 -31.54892 -30.37941 -28.52365 -25.85432 -25.08188 -24.38973 -22.27598 -21.38389 -20.73693 -18.90099 -17.93911 -17.70433 -17.59982 -16.79621 -16.10961 -15.92724 -15.23211 -15.03395 -14.59012 -14.37246 -13.98657 -13.67528 -13.41091 -12.90945 -12.73710 -12.35120 -12.06846 -11.79908 -11.65212 -11.35418 -11.08233 -10.85901 -10.74493 -10.52515 -10.36122 -9.95717 -9.68755 -9.61347 -9.28771 -8.74886 -7.75999 -7.10664 -6.98359 -4.56510 0.39560 0.73149 2.17278 2.55774 2.59072 2.67611 3.06145 3.10579 3.20208 3.29125 3.60391 3.94379 4.06930 4.39139 4.45254 4.54453 4.70252 4.94563 5.33397 5.36717 5.64814 5.74646 5.97061 6.20272 6.24996 6.32773 6.55448 6.60602 6.74453 7.04107 7.23835 7.38540 7.56289 7.65280 7.73827 7.80690 8.05356 8.29030 8.55054 8.69082 8.74596 10.04062 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.038858 B = 0.003448 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.397847 B = 8119.558479 C = 8498.691223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.446 4.446 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.239 4.239 11 C -0.064 4.064 12 C -0.224 4.224 13 C 0.161 3.839 14 N -0.627 5.627 15 C 0.363 3.637 16 C -0.191 4.191 17 C -0.021 4.021 18 C -0.049 4.049 19 C 0.560 3.440 20 O -0.518 6.518 21 O -0.492 6.492 22 N -0.133 5.133 23 N -0.271 5.271 24 C -0.230 4.230 25 H 0.286 0.714 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.417 0.583 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.413 0.587 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.691 -6.569 0.368 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.165 1.165 7 C -0.475 4.475 8 H 0.108 0.892 9 C 0.103 3.897 10 C -0.258 4.258 11 C -0.083 4.083 12 C -0.245 4.245 13 C 0.069 3.931 14 N -0.248 5.248 15 C 0.122 3.878 16 C -0.224 4.224 17 C -0.049 4.049 18 C -0.197 4.197 19 C 0.402 3.598 20 O -0.406 6.406 21 O -0.302 6.302 22 N 0.016 4.984 23 N -0.127 5.127 24 C -0.252 4.252 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.271 0.729 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.677 -5.552 -0.512 15.700 hybrid contribution 1.026 -0.574 1.189 1.672 sum 15.703 -6.126 0.677 16.869 Atomic orbital electron populations 1.69671 1.08071 1.30306 1.35406 1.26171 0.94800 1.01790 0.90844 0.86277 0.81192 0.79534 0.78785 1.19687 1.22137 1.16489 1.19457 0.91882 0.95806 1.40317 0.89196 1.17455 0.92931 0.90284 0.89064 1.21054 0.95303 1.03925 1.05564 1.20462 0.93440 0.96783 0.97595 1.20307 0.99152 0.98144 1.06889 1.17517 0.89121 0.88367 0.98089 1.42113 1.25495 1.39196 1.18011 1.20361 0.87608 0.88876 0.90936 1.21700 0.96115 1.01959 1.02652 1.21971 0.96056 0.95419 0.91448 1.21182 0.99444 1.04786 0.94262 1.19995 0.82726 0.76872 0.80225 1.90895 1.41140 1.33632 1.74949 1.84706 1.52983 1.67862 1.24628 1.73348 0.95896 1.02947 1.26161 1.73834 1.13884 1.22503 1.02525 1.20642 0.90170 1.05408 1.08943 0.90385 0.88191 0.88217 0.87212 0.74546 0.82645 0.82283 0.72926 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.24 13.93 55.55 0.77 -20.47 16 2 C 0.08 2.12 5.45 -17.34 -0.09 2.02 16 3 Si 0.91 20.35 24.39 -169.99 -4.15 16.21 16 4 H -0.27 -5.87 6.74 56.52 0.38 -5.49 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.24 -5.45 6.59 56.52 0.37 -5.07 16 7 C -0.45 -11.70 9.60 -37.74 -0.36 -12.06 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.11 2.60 5.18 -106.85 -0.55 2.04 16 10 C -0.24 -5.63 6.99 -38.83 -0.27 -5.90 16 11 C -0.06 -1.37 10.01 -39.70 -0.40 -1.77 16 12 C -0.22 -4.63 8.59 -39.09 -0.34 -4.96 16 13 C 0.16 3.18 6.28 -83.81 -0.53 2.66 16 14 N -0.63 -9.47 5.46 -9.93 -0.05 -9.53 16 15 C 0.36 5.34 7.28 -154.85 -1.13 4.21 16 16 C -0.19 -2.04 10.04 -39.05 -0.39 -2.43 16 17 C -0.02 -0.23 9.71 -38.86 -0.38 -0.61 16 18 C -0.05 -0.66 6.83 -82.86 -0.57 -1.23 16 19 C 0.56 6.84 8.32 34.61 0.29 7.13 16 20 O -0.52 -6.86 17.17 -19.24 -0.33 -7.19 16 21 O -0.49 -5.01 13.26 -40.56 -0.54 -5.55 16 22 N -0.13 -2.16 11.30 33.31 0.38 -1.78 16 23 N -0.27 -4.72 8.26 31.23 0.26 -4.46 16 24 C -0.23 -4.99 9.70 -38.67 -0.38 -5.37 16 25 H 0.29 6.78 8.30 -40.82 -0.34 6.45 16 26 H 0.10 2.35 4.28 -52.48 -0.22 2.13 16 27 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.11 2.20 6.24 -52.48 -0.33 1.87 16 29 H 0.42 4.78 8.81 -40.82 -0.36 4.42 16 30 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.16 1.31 7.71 -52.49 -0.40 0.90 16 32 H 0.41 1.89 9.11 45.56 0.42 2.30 16 33 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -31.14 294.86 -6.08 -37.22 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -1.78 Total: 7.37 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -5.09 Total: -16.27 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 1.35 Total: -36.24 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.87 Total: -12.74 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.15 Total: 16.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.14 -6.08 -37.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313483215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.067 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds