Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99923 * 2 1 4 4 C 1.52996 * 109.46956 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47173 * 64.99808 * 4 3 2 6 6 C 1.36884 * 120.00216 * 269.99394 * 5 4 3 7 7 H 1.08002 * 119.99653 * 135.78563 * 6 5 4 8 8 C 1.38996 * 120.00244 * 315.79662 * 6 5 4 9 9 N 1.31404 * 119.99770 * 346.15621 * 8 6 5 10 10 Si 1.86795 * 120.00137 * 166.15838 * 8 6 5 11 11 H 1.48491 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47128 * 119.99948 * 10 8 6 13 13 H 1.48502 * 109.47412 * 239.99845 * 10 8 6 14 14 C 1.34774 * 120.00089 * 89.99970 * 5 4 3 15 15 O 1.21763 * 119.99835 * 354.36709 * 14 5 4 16 16 C 1.46411 * 120.00446 * 174.36879 * 14 5 4 17 17 C 1.36853 * 125.43580 * 173.56158 * 16 14 5 18 18 C 1.37689 * 113.24555 * 179.97438 * 17 16 14 19 19 O 1.36207 * 122.49687 * 179.97438 * 18 17 16 20 20 C 1.42906 * 117.00097 * 179.97438 * 19 18 17 21 21 C 1.34129 * 115.00536 * 359.97438 * 18 17 16 22 22 S 1.70595 * 110.98523 * 359.76628 * 21 18 17 23 23 H 1.08998 * 109.47414 * 60.00695 * 1 2 3 24 24 H 1.09009 * 109.47161 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47338 * 300.00122 * 1 2 3 26 26 H 1.08994 * 109.46680 * 59.99836 * 3 2 1 27 27 H 1.09002 * 109.46296 * 299.99813 * 3 2 1 28 28 H 1.08999 * 109.47281 * 305.00019 * 4 3 2 29 29 H 1.09001 * 109.47055 * 184.99763 * 4 3 2 30 30 H 0.97004 * 120.00021 * 185.01501 * 9 8 6 31 31 H 1.08000 * 123.37705 * 359.97438 * 17 16 14 32 32 H 1.09004 * 109.46313 * 59.99955 * 20 19 18 33 33 H 1.08991 * 109.47268 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.46946 * 300.00503 * 20 19 18 35 35 H 1.08000 * 124.51133 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7964 -1.3368 7 1 3.7225 -1.3193 -2.2046 8 6 4.7012 -1.5055 -0.3053 9 7 5.3932 -0.8685 0.6123 10 14 4.5297 -3.3638 -0.2236 11 1 3.7077 -3.8357 -1.3666 12 1 5.8754 -3.9885 -0.2910 13 1 3.8706 -3.7445 1.0514 14 6 4.2614 1.3337 -2.3218 15 8 4.0565 2.5332 -2.2809 16 6 4.8183 0.7271 -3.5324 17 6 5.0325 1.3755 -4.7184 18 6 5.5678 0.5632 -5.6928 19 8 5.8557 1.0148 -6.9452 20 6 6.4088 0.0706 -7.8642 21 6 5.7846 -0.7060 -5.3169 22 16 5.3262 -0.9486 -3.6917 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6885 1.8463 -0.8901 28 1 3.8514 0.5683 0.8409 29 1 3.9785 2.1766 0.0889 30 1 5.8751 -1.3679 1.2901 31 1 4.8045 2.4195 -4.8744 32 1 5.7089 -0.7534 -8.0036 33 1 6.5901 0.5588 -8.8217 34 1 7.3486 -0.3140 -7.4683 35 1 6.1986 -1.4714 -5.9566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316435683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = -75.615119 kcal Electronic energy + Delta-G solvation = -20782.021890 eV Core-core repulsion = 17487.132304 eV Total energy + Delta-G solvation = -3294.889586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.23290 -38.62563 -36.98371 -35.25113 -34.55897 -31.82454 -29.89497 -28.08626 -27.49889 -25.87989 -25.06447 -23.62210 -21.80205 -19.97970 -18.84944 -17.92162 -16.61261 -16.35973 -15.78889 -15.60680 -15.35366 -15.14840 -14.53067 -14.45009 -14.23549 -13.75238 -13.47498 -13.00457 -12.28641 -12.22954 -12.15348 -11.92156 -11.66301 -11.30397 -11.22099 -11.15924 -11.04057 -10.97166 -10.42239 -10.39685 -10.19341 -9.88937 -9.17314 -9.01023 -8.68943 -8.04740 -7.54953 -7.18130 -6.57220 -4.31411 1.41966 2.51415 2.94845 3.09801 3.15811 3.19555 3.22499 3.78554 3.96712 4.29764 4.48547 4.69455 4.95220 5.29490 5.35679 5.53033 5.64843 5.65791 5.72437 5.93008 5.99051 6.01233 6.06078 6.22993 6.26726 6.56902 6.60394 6.67261 6.94190 7.10877 7.27099 7.71432 7.79319 7.91061 8.15970 8.86539 9.31575 9.74665 10.43176 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.006645 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.857469 B = 4212.516192 C = 5121.173418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.118 3.882 5 N -0.421 5.421 6 C -0.324 4.324 7 H 0.099 0.901 8 C 0.066 3.934 9 N -0.844 5.844 10 Si 0.910 3.090 11 H -0.259 1.259 12 H -0.276 1.276 13 H -0.274 1.274 14 C 0.534 3.466 15 O -0.597 6.597 16 C -0.191 4.191 17 C -0.119 4.119 18 C 0.092 3.908 19 O -0.319 6.319 20 C 0.036 3.964 21 C -0.426 4.426 22 S 0.310 5.690 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.276 0.724 31 H 0.145 0.855 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 -2.978 -5.103 6.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.026 4.026 4 C -0.006 4.006 5 N -0.138 5.138 6 C -0.459 4.459 7 H 0.116 0.884 8 C -0.145 4.145 9 N -0.477 5.477 10 Si 0.735 3.265 11 H -0.183 1.183 12 H -0.201 1.201 13 H -0.199 1.199 14 C 0.324 3.676 15 O -0.485 6.485 16 C -0.313 4.313 17 C -0.153 4.153 18 C 0.036 3.964 19 O -0.234 6.234 20 C -0.059 4.059 21 C -0.562 4.562 22 S 0.584 5.416 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.790 -3.692 -4.035 5.754 hybrid contribution -0.126 0.254 -1.097 1.133 sum -1.916 -3.437 -5.132 6.467 Atomic orbital electron populations 1.22646 0.83364 1.01758 0.98872 1.88127 1.17417 1.27644 1.95054 1.23017 0.96267 0.84433 0.98853 1.21501 0.89564 0.99116 0.90370 1.43153 1.55458 1.05987 1.09222 1.19359 1.39042 0.81198 1.06277 0.88450 1.25490 0.93264 1.00561 0.95152 1.69780 1.25838 1.37057 1.15060 0.86102 0.78682 0.82218 0.79504 1.18283 1.20135 1.19910 1.17236 0.81253 0.85686 0.83426 1.90668 1.59446 1.14606 1.83738 1.24478 1.09950 0.98688 0.98153 1.19634 1.04391 1.00910 0.90412 1.17482 1.01568 0.91896 0.85494 1.86011 1.79326 1.38171 1.19889 1.22842 0.97616 0.93315 0.92155 1.26304 1.19019 1.00630 1.10279 1.84385 1.52480 1.06439 0.98304 0.94935 0.90404 0.95169 0.94116 0.93907 0.86993 0.90751 0.91301 0.83742 0.93393 0.89124 0.93386 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.51 10.18 -35.23 -0.36 -7.87 16 3 C 0.05 1.05 6.28 37.16 0.23 1.29 16 4 C 0.12 2.72 5.37 -4.04 -0.02 2.70 16 5 N -0.42 -10.42 2.45 -116.39 -0.28 -10.70 16 6 C -0.32 -7.82 6.16 -15.02 -0.09 -7.92 16 7 H 0.10 2.32 5.80 -38.52 -0.22 2.09 16 8 C 0.07 1.57 5.09 -17.45 -0.09 1.48 16 9 N -0.84 -20.81 11.48 55.50 0.64 -20.18 16 10 Si 0.91 18.52 29.58 -169.99 -5.03 13.50 16 11 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 12 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 C 0.53 13.55 7.58 -12.97 -0.10 13.46 16 15 O -0.60 -16.14 16.49 5.13 0.08 -16.06 16 16 C -0.19 -4.38 6.27 -36.80 -0.23 -4.61 16 17 C -0.12 -2.55 10.01 -40.28 -0.40 -2.96 16 18 C 0.09 1.79 6.61 -41.23 -0.27 1.52 16 19 O -0.32 -5.62 10.56 -20.40 -0.22 -5.83 16 20 C 0.04 0.46 9.93 101.05 1.00 1.46 16 21 C -0.43 -7.77 9.81 29.29 0.29 -7.48 16 22 S 0.31 6.26 18.55 -107.50 -1.99 4.26 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.11 2.71 5.73 -51.93 -0.30 2.41 16 29 H 0.07 1.71 7.51 -51.93 -0.39 1.32 16 30 H 0.28 6.38 8.32 -40.82 -0.34 6.04 16 31 H 0.14 3.06 8.06 -52.49 -0.42 2.64 16 32 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.56 7.84 -51.93 -0.41 0.16 16 35 H 0.15 2.30 6.96 -52.49 -0.37 1.93 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -28.83 311.63 -5.22 -34.05 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.18 Total: 3.62 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 1.43 Total: 0.52 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.35 Total: -30.88 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.49 Total: -29.76 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.99 Total: 4.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.83 -5.22 -34.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316435683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.562 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds