Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99923 * 2 1 4 4 C 1.52996 * 109.46956 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47173 * 64.99808 * 4 3 2 6 6 C 1.36884 * 120.00216 * 269.99394 * 5 4 3 7 7 H 1.08002 * 119.99653 * 135.78563 * 6 5 4 8 8 C 1.38996 * 120.00244 * 315.79662 * 6 5 4 9 9 N 1.31404 * 119.99770 * 346.15621 * 8 6 5 10 10 Si 1.86795 * 120.00137 * 166.15838 * 8 6 5 11 11 H 1.48491 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47128 * 119.99948 * 10 8 6 13 13 H 1.48502 * 109.47412 * 239.99845 * 10 8 6 14 14 C 1.34774 * 120.00089 * 89.99970 * 5 4 3 15 15 O 1.21763 * 119.99835 * 354.36709 * 14 5 4 16 16 C 1.46411 * 120.00446 * 174.36879 * 14 5 4 17 17 C 1.36853 * 125.43580 * 173.56158 * 16 14 5 18 18 C 1.37689 * 113.24555 * 179.97438 * 17 16 14 19 19 O 1.36207 * 122.49687 * 179.97438 * 18 17 16 20 20 C 1.42906 * 117.00097 * 179.97438 * 19 18 17 21 21 C 1.34129 * 115.00536 * 359.97438 * 18 17 16 22 22 S 1.70595 * 110.98523 * 359.76628 * 21 18 17 23 23 H 1.08998 * 109.47414 * 60.00695 * 1 2 3 24 24 H 1.09009 * 109.47161 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47338 * 300.00122 * 1 2 3 26 26 H 1.08994 * 109.46680 * 59.99836 * 3 2 1 27 27 H 1.09002 * 109.46296 * 299.99813 * 3 2 1 28 28 H 1.08999 * 109.47281 * 305.00019 * 4 3 2 29 29 H 1.09001 * 109.47055 * 184.99763 * 4 3 2 30 30 H 0.97004 * 120.00021 * 185.01501 * 9 8 6 31 31 H 1.08000 * 123.37705 * 359.97438 * 17 16 14 32 32 H 1.09004 * 109.46313 * 59.99955 * 20 19 18 33 33 H 1.08991 * 109.47268 * 179.97438 * 20 19 18 34 34 H 1.08995 * 109.46946 * 300.00503 * 20 19 18 35 35 H 1.08000 * 124.51133 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0967 -0.7964 -1.3368 7 1 3.7225 -1.3193 -2.2046 8 6 4.7012 -1.5055 -0.3053 9 7 5.3932 -0.8685 0.6123 10 14 4.5297 -3.3638 -0.2236 11 1 3.7077 -3.8357 -1.3666 12 1 5.8754 -3.9885 -0.2910 13 1 3.8706 -3.7445 1.0514 14 6 4.2614 1.3337 -2.3218 15 8 4.0565 2.5332 -2.2809 16 6 4.8183 0.7271 -3.5324 17 6 5.0325 1.3755 -4.7184 18 6 5.5678 0.5632 -5.6928 19 8 5.8557 1.0148 -6.9452 20 6 6.4088 0.0706 -7.8642 21 6 5.7846 -0.7060 -5.3169 22 16 5.3262 -0.9486 -3.6917 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6885 1.8463 -0.8901 28 1 3.8514 0.5683 0.8409 29 1 3.9785 2.1766 0.0889 30 1 5.8751 -1.3679 1.2901 31 1 4.8045 2.4195 -4.8744 32 1 5.7089 -0.7534 -8.0036 33 1 6.5901 0.5588 -8.8217 34 1 7.3486 -0.3140 -7.4683 35 1 6.1986 -1.4714 -5.9566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316435683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = -94.360882 kcal Electronic energy + Delta-G solvation = -20782.834767 eV Core-core repulsion = 17487.132304 eV Total energy + Delta-G solvation = -3295.702463 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.80494 -40.29648 -38.55202 -36.89399 -36.28882 -33.65772 -31.58549 -29.67542 -28.61860 -27.34018 -26.78986 -25.21646 -23.42591 -21.67638 -20.55798 -19.57886 -18.35248 -17.78058 -17.36329 -17.25335 -16.75530 -16.60248 -16.19738 -16.07638 -15.85306 -15.19561 -15.14031 -14.68787 -13.88824 -13.64544 -13.54730 -13.40840 -13.38759 -12.96833 -12.85634 -12.65105 -12.53256 -12.43782 -12.00480 -11.86154 -11.70824 -11.52778 -10.95664 -10.62845 -10.46755 -9.74407 -9.35664 -8.72734 -8.36902 -6.18149 -0.23969 0.88688 1.36043 1.49703 1.52198 1.62669 1.63064 2.24752 2.44763 2.49739 2.95498 2.99904 3.20305 4.10706 4.25838 4.26749 4.33205 4.44782 4.48262 4.53237 4.56116 4.61015 4.61421 4.73989 4.78085 4.86748 5.00835 5.04118 5.27501 5.34420 5.42960 5.91735 6.32253 6.41347 6.44893 7.02589 7.43856 7.88099 8.65343 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.006645 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.857469 B = 4212.516192 C = 5121.173418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.064 3.936 4 C 0.115 3.885 5 N -0.425 5.425 6 C -0.338 4.338 7 H 0.101 0.899 8 C 0.035 3.965 9 N -0.874 5.874 10 Si 0.961 3.039 11 H -0.248 1.248 12 H -0.267 1.267 13 H -0.276 1.276 14 C 0.517 3.483 15 O -0.631 6.631 16 C -0.232 4.232 17 C -0.120 4.120 18 C 0.085 3.915 19 O -0.334 6.334 20 C 0.024 3.976 21 C -0.400 4.400 22 S 0.327 5.673 23 H 0.036 0.964 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.029 0.971 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.280 0.720 31 H 0.136 0.864 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.058 0.942 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -5.058 -6.460 8.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.009 4.009 5 N -0.141 5.141 6 C -0.471 4.471 7 H 0.118 0.882 8 C -0.173 4.173 9 N -0.509 5.509 10 Si 0.783 3.217 11 H -0.171 1.171 12 H -0.192 1.192 13 H -0.201 1.201 14 C 0.308 3.692 15 O -0.522 6.522 16 C -0.354 4.354 17 C -0.156 4.156 18 C 0.030 3.970 19 O -0.250 6.250 20 C -0.070 4.070 21 C -0.537 4.537 22 S 0.600 5.400 23 H 0.055 0.945 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.807 -5.790 -5.379 8.106 hybrid contribution -0.105 0.907 -0.805 1.217 sum -1.912 -4.883 -6.184 8.108 Atomic orbital electron populations 1.22887 0.80695 1.03403 1.00154 1.88059 1.20368 1.27558 1.95301 1.22794 0.94257 0.84787 0.99537 1.21495 0.91761 0.98012 0.89599 1.43355 1.54919 1.06457 1.09351 1.19543 1.39638 0.80904 1.06992 0.88225 1.26158 0.92558 1.04127 0.94440 1.69861 1.26665 1.38630 1.15718 0.85335 0.79120 0.77653 0.79593 1.17139 1.19157 1.20110 1.17666 0.81401 0.85558 0.84541 1.90610 1.61102 1.15877 1.84614 1.24385 1.12282 1.00807 0.97889 1.19759 1.04088 1.00932 0.90832 1.17357 1.01588 0.91842 0.86256 1.86007 1.79585 1.40069 1.19333 1.23246 0.98068 0.93457 0.92226 1.26473 1.17077 1.00915 1.09243 1.84072 1.52169 1.04432 0.99314 0.94513 0.88639 0.92949 0.91172 0.95274 0.88201 0.91970 0.90968 0.84599 0.92140 0.86186 0.92307 0.79698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.39 -16.08 10.18 -148.98 -1.52 -17.59 16 3 C 0.06 2.61 6.28 71.98 0.45 3.06 16 4 C 0.11 5.47 5.37 86.38 0.46 5.93 16 5 N -0.43 -21.62 2.45 -640.34 -1.57 -23.19 16 6 C -0.34 -16.39 6.16 84.09 0.52 -15.87 16 7 H 0.10 4.72 5.80 -11.79 -0.07 4.65 16 8 C 0.04 1.65 5.09 84.94 0.43 2.09 16 9 N -0.87 -43.59 11.48 21.67 0.25 -43.34 16 10 Si 0.96 36.86 29.58 68.60 2.03 38.89 16 11 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 12 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 13 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 14 C 0.52 27.25 7.58 86.37 0.65 27.90 16 15 O -0.63 -35.84 16.49 -4.55 -0.08 -35.92 16 16 C -0.23 -10.84 6.27 24.07 0.15 -10.69 16 17 C -0.12 -5.20 10.01 21.81 0.22 -4.99 16 18 C 0.09 3.18 6.61 21.20 0.14 3.32 16 19 O -0.33 -11.01 10.56 -95.91 -1.01 -12.02 16 20 C 0.02 0.52 9.93 113.37 1.13 1.65 16 21 C -0.40 -13.44 9.81 66.88 0.66 -12.79 16 22 S 0.33 12.78 18.55 -56.49 -1.05 11.73 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.10 4.99 5.73 -2.39 -0.01 4.98 16 29 H 0.06 3.02 7.51 -2.39 -0.02 3.01 16 30 H 0.28 13.02 8.32 -92.71 -0.77 12.25 16 31 H 0.14 5.98 8.06 -2.91 -0.02 5.95 16 32 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.14 7.84 -2.39 -0.02 1.12 16 35 H 0.19 4.83 6.96 -2.91 -0.02 4.81 16 Total: -1.00 -63.25 311.63 4.17 -59.08 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.05 Total: 20.77 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.06 Total: 1.60 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.32 Total: -66.53 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -2.60 Total: -65.53 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: 12.78 SS G_CDS: -1.05 Total: 11.73 kcal Total: -63.25 4.17 -59.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316435683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.277 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds