Wall clock time and date at job start Tue Mar 31 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42909 * 113.99923 * 2 1 4 4 C 1.53001 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46597 * 65.00099 * 4 3 2 6 6 C 1.36918 * 120.00257 * 264.62368 * 5 4 3 7 7 H 1.07999 * 120.00407 * 126.85623 * 6 5 4 8 8 C 1.38966 * 119.99999 * 306.85792 * 6 5 4 9 9 N 1.31427 * 120.00004 * 4.20950 * 8 6 5 10 10 Si 1.86802 * 119.99897 * 184.20791 * 8 6 5 11 11 H 1.48503 * 109.47348 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47351 * 120.00105 * 10 8 6 13 13 H 1.48505 * 109.46956 * 240.00205 * 10 8 6 14 14 C 1.34773 * 119.99799 * 84.62796 * 5 4 3 15 15 O 1.21817 * 120.00199 * 3.85742 * 14 5 4 16 16 C 1.41593 * 119.99999 * 183.85626 * 14 5 4 17 17 S 1.75820 * 125.48340 * 352.76049 * 16 14 5 18 18 C 1.70567 * 91.66719 * 180.02562 * 17 16 14 19 19 C 1.33647 * 111.16513 * 0.02562 * 18 17 16 20 20 C 1.37410 * 125.48154 * 172.78907 * 16 14 5 21 21 O 1.35786 * 123.47934 * 359.97438 * 20 16 14 22 22 C 1.42907 * 116.99614 * 180.02562 * 21 20 16 23 23 H 1.08993 * 109.47005 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46839 * 300.00058 * 1 2 3 25 25 H 1.09004 * 109.46505 * 60.00020 * 1 2 3 26 26 H 1.08999 * 109.46527 * 59.99951 * 3 2 1 27 27 H 1.08996 * 109.47409 * 299.99959 * 3 2 1 28 28 H 1.09000 * 109.47082 * 305.00554 * 4 3 2 29 29 H 1.08996 * 109.46878 * 185.00197 * 4 3 2 30 30 H 0.97002 * 120.00034 * 179.97438 * 9 8 6 31 31 H 1.08004 * 124.41465 * 179.73332 * 18 17 16 32 32 H 1.07998 * 122.44880 * 180.02562 * 19 18 17 33 33 H 1.09004 * 109.46932 * 59.99925 * 22 21 20 34 34 H 1.08999 * 109.46544 * 179.97438 * 22 21 20 35 35 H 1.08997 * 109.46930 * 300.00236 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.2037 -0.7852 -1.3032 7 1 3.7211 -1.3851 -2.0606 8 6 5.0552 -1.3827 -0.3818 9 7 5.5774 -0.6682 0.5900 10 14 5.4576 -3.2013 -0.5242 11 1 4.7472 -3.7752 -1.6952 12 1 6.9221 -3.3719 -0.7006 13 1 5.0226 -3.9026 0.7104 14 6 4.1590 1.3212 -2.3509 15 8 4.0253 2.5303 -2.2871 16 6 4.5059 0.7112 -3.5807 17 16 4.9099 -0.9858 -3.8001 18 6 5.1559 -0.7625 -5.4731 19 6 4.9447 0.5090 -5.8263 20 6 4.5816 1.3504 -4.7947 21 8 4.3260 2.6735 -4.9618 22 6 4.4459 3.1951 -6.2869 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8465 -0.8899 28 1 3.8508 0.5685 0.8426 29 1 3.9784 2.1766 0.0902 30 1 6.1715 -1.0854 1.2334 31 1 5.4489 -1.5454 -6.1568 32 1 5.0494 0.8525 -6.8449 33 1 3.7493 2.6766 -6.9459 34 1 4.2149 4.2603 -6.2803 35 1 5.4644 3.0459 -6.6452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316452899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:07 Heat of formation + Delta-G solvation = -72.098607 kcal Electronic energy + Delta-G solvation = -21190.686204 eV Core-core repulsion = 17895.949105 eV Total energy + Delta-G solvation = -3294.737098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.34952 -38.28251 -36.84428 -35.15894 -34.53764 -31.71567 -30.11929 -28.55918 -26.48609 -25.76186 -24.93197 -23.75021 -21.97975 -19.78116 -18.91974 -18.20771 -16.61865 -15.76219 -15.58745 -15.37296 -15.20639 -15.12201 -14.50968 -14.34708 -14.04363 -13.78513 -13.33513 -13.10885 -12.56204 -12.09567 -12.02741 -11.77599 -11.56627 -11.28163 -11.10474 -11.02621 -11.01322 -10.79888 -10.46280 -10.36242 -10.10184 -9.83891 -8.97541 -8.88489 -8.49242 -7.88423 -7.45153 -7.08006 -6.44744 -4.31920 1.46722 2.52000 2.92060 3.10259 3.16813 3.19500 3.20906 4.01430 4.17363 4.51709 4.58884 4.86477 5.01507 5.32179 5.47586 5.54553 5.68975 5.71186 5.76671 5.81269 6.02261 6.08225 6.16935 6.28425 6.39799 6.53659 6.60372 6.82736 7.01849 7.21881 7.41038 7.88332 7.99346 8.08030 8.28610 8.95435 9.51845 9.96077 10.53905 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.008444 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.118249 B = 3315.212999 C = 4479.396519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.440 5.440 6 C -0.319 4.319 7 H 0.096 0.904 8 C 0.065 3.935 9 N -0.847 5.847 10 Si 0.901 3.099 11 H -0.256 1.256 12 H -0.273 1.273 13 H -0.275 1.275 14 C 0.553 3.447 15 O -0.587 6.587 16 C -0.274 4.274 17 S 0.319 5.681 18 C -0.303 4.303 19 C -0.219 4.219 20 C 0.137 3.863 21 O -0.278 6.278 22 C 0.029 3.971 23 H 0.077 0.923 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.274 0.726 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -1.327 -6.486 7.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.027 4.027 4 C 0.000 4.000 5 N -0.159 5.159 6 C -0.455 4.455 7 H 0.113 0.887 8 C -0.145 4.145 9 N -0.480 5.480 10 Si 0.726 3.274 11 H -0.179 1.179 12 H -0.198 1.198 13 H -0.200 1.200 14 C 0.344 3.656 15 O -0.473 6.473 16 C -0.394 4.394 17 S 0.593 5.407 18 C -0.440 4.440 19 C -0.252 4.252 20 C 0.078 3.922 21 O -0.190 6.190 22 C -0.067 4.067 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.869 -2.027 -5.260 6.325 hybrid contribution -0.038 0.541 -1.432 1.531 sum -2.907 -1.486 -6.691 7.445 Atomic orbital electron populations 1.22638 0.83484 1.01672 0.98821 1.88115 1.17333 1.27894 1.95051 1.23095 0.96811 0.84200 0.98638 1.21421 0.88757 0.99083 0.90783 1.43089 1.58373 1.06786 1.07673 1.19172 1.26475 0.83328 1.16551 0.88701 1.25648 0.93949 0.99922 0.94990 1.69768 1.28251 1.36873 1.13141 0.86226 0.79082 0.82556 0.79566 1.17948 1.19841 1.20001 1.16039 0.79872 0.86175 0.83465 1.90703 1.57087 1.13629 1.85894 1.22884 1.21359 0.98532 0.96653 1.84668 1.58810 1.03817 0.93382 1.26453 1.07111 1.00403 1.10061 1.19671 1.12161 0.94223 0.99174 1.18184 0.97882 0.83829 0.92300 1.86302 1.84415 1.19843 1.28464 1.22965 1.00530 0.99532 0.83714 0.90443 0.95185 0.95052 0.94296 0.94121 0.87098 0.91192 0.91522 0.83370 0.85920 0.93536 0.88919 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.82 10.43 -35.23 -0.37 -8.19 16 3 C 0.05 1.07 6.24 37.16 0.23 1.30 16 4 C 0.12 2.99 5.26 -4.04 -0.02 2.97 16 5 N -0.44 -11.37 2.42 -118.05 -0.29 -11.65 16 6 C -0.32 -7.96 6.31 -15.01 -0.09 -8.05 16 7 H 0.10 2.31 5.55 -32.90 -0.18 2.13 16 8 C 0.07 1.60 5.34 -17.46 -0.09 1.51 16 9 N -0.85 -21.69 11.34 55.50 0.63 -21.06 16 10 Si 0.90 18.62 29.55 -169.99 -5.02 13.59 16 11 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.55 14.76 7.39 -14.98 -0.11 14.65 16 15 O -0.59 -16.83 15.51 -12.14 -0.19 -17.02 16 16 C -0.27 -6.54 6.15 -38.60 -0.24 -6.77 16 17 S 0.32 6.44 18.22 -107.50 -1.96 4.48 16 18 C -0.30 -5.26 10.90 29.12 0.32 -4.94 16 19 C -0.22 -3.96 9.17 -41.28 -0.38 -4.33 16 20 C 0.14 2.98 6.70 -39.98 -0.27 2.71 16 21 O -0.28 -5.92 9.39 -36.29 -0.34 -6.26 16 22 C 0.03 0.42 9.94 101.05 1.00 1.42 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.11 2.82 5.94 -51.93 -0.31 2.51 16 29 H 0.07 1.72 7.53 -51.93 -0.39 1.33 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.12 1.84 6.99 -52.49 -0.37 1.48 16 33 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.61 7.88 -51.93 -0.41 0.20 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -30.90 309.61 -5.57 -36.47 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.16 Total: 2.89 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 1.46 Total: 2.08 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.34 Total: -32.72 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.90 Total: -31.46 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.96 Total: 4.48 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.90 -5.57 -36.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316452899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.631 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds