Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47378 * 2 1 4 4 C 1.35908 * 116.99907 * 180.02562 * 3 2 1 5 5 C 1.38746 * 120.05602 * 359.97438 * 4 3 2 6 6 C 1.38126 * 119.94576 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.26200 * 6 5 4 8 8 C 1.38243 * 120.10724 * 359.48327 * 7 6 5 9 9 S 1.76204 * 119.97057 * 180.25817 * 8 7 6 10 10 O 1.42108 * 106.40012 * 23.79667 * 9 8 7 11 11 O 1.42101 * 106.40571 * 156.71468 * 9 8 7 12 12 N 1.65601 * 107.21905 * 270.25650 * 9 8 7 13 13 C 1.46503 * 119.99882 * 64.99865 * 12 9 8 14 14 C 1.50697 * 109.46850 * 164.99908 * 13 12 9 15 15 H 1.08003 * 120.00143 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99946 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00154 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47230 * 90.00327 * 18 16 14 20 20 H 1.48501 * 109.47191 * 210.00306 * 18 16 14 21 21 H 1.48496 * 109.47074 * 330.00170 * 18 16 14 22 22 C 1.38166 * 120.05887 * 0.51419 * 8 7 6 23 23 H 1.09000 * 109.47040 * 60.00307 * 1 2 3 24 24 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47089 * 300.00606 * 1 2 3 26 26 H 1.08998 * 109.47238 * 239.99111 * 2 1 3 27 27 H 1.09009 * 109.46444 * 119.99721 * 2 1 3 28 28 H 1.07999 * 120.02769 * 0.02562 * 5 4 3 29 29 H 1.08002 * 119.97098 * 179.97438 * 6 5 4 30 30 H 1.07993 * 119.94284 * 179.74698 * 7 6 5 31 31 H 0.96996 * 119.99792 * 244.99993 * 12 9 8 32 32 H 1.08994 * 109.46880 * 284.99675 * 13 12 9 33 33 H 1.08994 * 109.46937 * 45.00097 * 13 12 9 34 34 H 0.97002 * 119.99771 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.02853 * 179.76883 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1999 0.4256 -0.0005 6 6 5.5689 0.6092 -0.0016 7 6 6.0963 1.8875 0.0028 8 6 5.2553 2.9847 -0.0026 9 16 5.9312 4.6119 -0.0038 10 8 7.2389 4.5028 -0.5492 11 8 4.9306 5.4617 -0.5480 12 7 6.1203 5.0654 1.5776 13 6 7.0695 4.3520 2.4357 14 6 7.3282 5.1616 3.6801 15 1 6.8346 6.1122 3.8183 16 6 8.1942 4.6882 4.6428 17 7 8.7949 3.5303 4.4749 18 14 8.5143 5.6913 6.1858 19 1 7.5346 5.3118 7.2351 20 1 9.8910 5.4232 6.6738 21 1 8.3720 7.1364 5.8751 22 6 3.8851 2.8064 -0.0015 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 3.7885 -0.5729 -0.0005 29 1 6.2280 -0.2465 -0.0012 30 1 7.1669 2.0289 0.0060 31 1 5.6026 5.8034 1.9357 32 1 6.6524 3.3838 2.7123 33 1 8.0057 4.2041 1.8974 34 1 9.4045 3.1975 5.1520 35 1 3.2285 3.6639 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337194002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = -94.140254 kcal Electronic energy + Delta-G solvation = -20139.633767 eV Core-core repulsion = 16843.940871 eV Total energy + Delta-G solvation = -3295.692896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18185 -37.56556 -36.70084 -35.32688 -34.62211 -32.21213 -32.15421 -31.18807 -29.54829 -26.74032 -24.42770 -22.75367 -22.42807 -22.07408 -19.31349 -18.33924 -17.35342 -16.32721 -16.30628 -16.08167 -16.04107 -15.70546 -15.19094 -14.58101 -13.97647 -13.61106 -13.57021 -13.43817 -12.87871 -12.68377 -12.43792 -12.23920 -12.11025 -11.83608 -11.79748 -11.57283 -11.46996 -11.24307 -10.99759 -10.94412 -10.74855 -10.49092 -10.12250 -9.43704 -9.33465 -8.90819 -8.28638 -8.23163 -6.18280 -4.22678 0.77484 1.06385 1.40975 3.02104 3.25420 3.31925 3.35179 3.45181 3.79859 4.27379 4.34776 4.60857 4.64644 4.77144 4.82386 4.89751 4.97676 5.18376 5.20813 5.29410 5.40863 5.50575 5.54870 5.75587 5.88120 6.12377 6.24107 6.30174 6.44002 6.59487 7.28046 7.29955 7.33800 7.79505 7.80393 8.17336 8.81435 9.42269 10.92147 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004590 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.521635 B = 6099.011518 C = 6707.920899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.315 6.315 4 C 0.103 3.897 5 C -0.160 4.160 6 C -0.101 4.101 7 C -0.049 4.049 8 C -0.630 4.630 9 S 2.691 3.309 10 O -0.959 6.959 11 O -0.977 6.977 12 N -1.101 6.101 13 C 0.245 3.755 14 C -0.529 4.529 15 H 0.066 0.934 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.051 4.051 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.412 0.588 32 H 0.022 0.978 33 H 0.040 0.960 34 H 0.266 0.734 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 -8.793 -8.098 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.229 6.229 4 C 0.057 3.943 5 C -0.179 4.179 6 C -0.120 4.120 7 C -0.069 4.069 8 C -0.715 4.715 9 S 2.778 3.222 10 O -0.949 6.949 11 O -0.967 6.967 12 N -0.864 5.864 13 C 0.122 3.878 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.071 4.071 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.163 0.837 31 H 0.246 0.754 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.755 -8.482 -8.824 16.970 hybrid contribution -0.185 -0.362 1.449 1.505 sum -11.940 -8.844 -7.375 16.589 Atomic orbital electron populations 1.21771 0.92665 1.02777 1.03679 1.22792 0.96002 0.82123 1.01348 1.86085 1.18686 1.29141 1.89003 1.18950 0.82411 0.94165 0.98729 1.21472 0.94627 0.98015 1.03805 1.21086 0.94371 0.97584 0.98958 1.20957 1.00319 0.91439 0.94163 1.31173 1.01995 1.24491 1.13827 1.01900 0.73595 0.73211 0.73450 1.93572 1.37614 1.86424 1.77287 1.93531 1.60861 1.64579 1.77765 1.55438 1.54872 1.45805 1.30284 1.19112 0.86940 0.91993 0.89786 1.21200 1.27097 1.05811 1.02791 0.91550 1.24966 0.95377 0.95199 0.98630 1.69937 1.28967 1.18781 1.35189 0.86409 0.77579 0.80400 0.82521 1.20539 1.21025 1.19658 1.20098 0.93182 0.95832 0.97978 0.91472 0.90422 0.91371 0.92112 0.91965 0.85114 0.84810 0.83698 0.75401 0.95973 0.94229 0.92476 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.48 5.46 37.16 0.20 0.68 16 3 O -0.31 -4.14 10.14 -19.45 -0.20 -4.34 16 4 C 0.10 1.50 6.69 -39.22 -0.26 1.24 16 5 C -0.16 -2.06 9.04 -39.43 -0.36 -2.41 16 6 C -0.10 -1.38 10.04 -39.60 -0.40 -1.78 16 7 C -0.05 -0.81 9.52 -39.56 -0.38 -1.18 16 8 C -0.63 -10.88 5.94 -39.61 -0.24 -11.12 16 9 S 2.69 51.15 5.74 -107.50 -0.62 50.53 16 10 O -0.96 -20.67 16.76 -57.17 -0.96 -21.63 16 11 O -0.98 -19.31 17.28 -57.17 -0.99 -20.30 16 12 N -1.10 -22.45 5.99 -11.66 -0.07 -22.52 16 13 C 0.24 6.03 5.98 -5.19 -0.03 6.00 16 14 C -0.53 -14.14 9.27 -34.44 -0.32 -14.46 16 15 H 0.07 1.69 7.65 -52.48 -0.40 1.29 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.05 -0.83 9.46 -39.43 -0.37 -1.20 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.06 0.51 7.66 -51.92 -0.40 0.11 16 28 H 0.13 1.25 6.30 -52.49 -0.33 0.92 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.15 2.33 7.62 -52.49 -0.40 1.93 16 31 H 0.41 7.64 8.54 -34.47 -0.29 7.35 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 1.05 7.75 -51.93 -0.40 0.64 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.15 2.22 7.62 -52.48 -0.40 1.82 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -32.76 316.91 -8.48 -41.23 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.27 Total: 4.38 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -1.86 Total: -23.35 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.67 Total: -47.00 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.14 Total: -46.27 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 51.15 SS G_CDS: -0.62 Total: 50.53 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.76 -8.48 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337194002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.906 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds