Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47378 * 2 1 4 4 C 1.35908 * 116.99907 * 180.02562 * 3 2 1 5 5 C 1.38746 * 120.05602 * 359.97438 * 4 3 2 6 6 C 1.38126 * 119.94576 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05386 * 0.26200 * 6 5 4 8 8 C 1.38243 * 120.10724 * 359.48327 * 7 6 5 9 9 S 1.76204 * 119.97057 * 180.25817 * 8 7 6 10 10 O 1.42108 * 106.40012 * 23.79667 * 9 8 7 11 11 O 1.42101 * 106.40571 * 156.71468 * 9 8 7 12 12 N 1.65601 * 107.21905 * 270.25650 * 9 8 7 13 13 C 1.46503 * 119.99882 * 64.99865 * 12 9 8 14 14 C 1.50697 * 109.46850 * 164.99908 * 13 12 9 15 15 H 1.08003 * 120.00143 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99946 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99924 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00154 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47230 * 90.00327 * 18 16 14 20 20 H 1.48501 * 109.47191 * 210.00306 * 18 16 14 21 21 H 1.48496 * 109.47074 * 330.00170 * 18 16 14 22 22 C 1.38166 * 120.05887 * 0.51419 * 8 7 6 23 23 H 1.09000 * 109.47040 * 60.00307 * 1 2 3 24 24 H 1.08997 * 109.47364 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47089 * 300.00606 * 1 2 3 26 26 H 1.08998 * 109.47238 * 239.99111 * 2 1 3 27 27 H 1.09009 * 109.46444 * 119.99721 * 2 1 3 28 28 H 1.07999 * 120.02769 * 0.02562 * 5 4 3 29 29 H 1.08002 * 119.97098 * 179.97438 * 6 5 4 30 30 H 1.07993 * 119.94284 * 179.74698 * 7 6 5 31 31 H 0.96996 * 119.99792 * 244.99993 * 12 9 8 32 32 H 1.08994 * 109.46880 * 284.99675 * 13 12 9 33 33 H 1.08994 * 109.46937 * 45.00097 * 13 12 9 34 34 H 0.97002 * 119.99771 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.02853 * 179.76883 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1999 0.4256 -0.0005 6 6 5.5689 0.6092 -0.0016 7 6 6.0963 1.8875 0.0028 8 6 5.2553 2.9847 -0.0026 9 16 5.9312 4.6119 -0.0038 10 8 7.2389 4.5028 -0.5492 11 8 4.9306 5.4617 -0.5480 12 7 6.1203 5.0654 1.5776 13 6 7.0695 4.3520 2.4357 14 6 7.3282 5.1616 3.6801 15 1 6.8346 6.1122 3.8183 16 6 8.1942 4.6882 4.6428 17 7 8.7949 3.5303 4.4749 18 14 8.5143 5.6913 6.1858 19 1 7.5346 5.3118 7.2351 20 1 9.8910 5.4232 6.6738 21 1 8.3720 7.1364 5.8751 22 6 3.8851 2.8064 -0.0015 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 3.7885 -0.5729 -0.0005 29 1 6.2280 -0.2465 -0.0012 30 1 7.1669 2.0289 0.0060 31 1 5.6026 5.8034 1.9357 32 1 6.6524 3.3838 2.7123 33 1 8.0057 4.2041 1.8974 34 1 9.4045 3.1975 5.1520 35 1 3.2285 3.6639 -0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337194002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -118.049745 kcal Electronic energy + Delta-G solvation = -20140.670560 eV Core-core repulsion = 16843.940871 eV Total energy + Delta-G solvation = -3296.729689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22070 -38.62578 -38.31649 -36.96437 -36.48759 -34.13556 -32.98375 -32.31724 -30.59315 -28.73687 -25.34817 -24.51653 -23.76517 -23.05912 -20.65479 -19.74524 -19.08596 -17.80756 -17.45179 -17.39826 -17.11846 -17.09235 -16.77947 -16.26286 -15.33218 -14.94384 -14.64953 -14.57529 -14.42623 -14.09178 -13.64256 -13.51275 -13.43898 -13.24784 -13.19523 -13.15664 -12.75422 -12.73958 -12.54069 -12.29784 -12.09485 -11.74736 -11.72469 -11.41681 -10.85414 -10.47861 -10.12976 -9.39965 -8.24444 -6.36421 -0.62109 -0.28116 0.25357 1.45572 1.46659 1.57690 2.02452 2.14930 2.40529 2.45607 2.77486 3.10578 3.39443 3.65758 3.85403 4.04153 4.05260 4.08059 4.23181 4.34609 4.39037 4.59342 4.68745 4.85600 4.93899 4.94880 5.07806 5.17573 5.24786 5.27154 5.30710 5.51636 5.74684 5.97248 6.30047 6.32083 6.77178 7.33075 8.86773 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.004590 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.521635 B = 6099.011518 C = 6707.920899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.329 6.329 4 C 0.102 3.898 5 C -0.148 4.148 6 C -0.096 4.096 7 C -0.075 4.075 8 C -0.640 4.640 9 S 2.708 3.292 10 O -0.990 6.990 11 O -0.986 6.986 12 N -1.102 6.102 13 C 0.258 3.742 14 C -0.552 4.552 15 H 0.074 0.926 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.973 3.027 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.265 1.265 22 C -0.073 4.073 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.172 0.828 29 H 0.168 0.832 30 H 0.137 0.863 31 H 0.419 0.581 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.269 0.731 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.305 -10.297 -7.591 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.244 6.244 4 C 0.056 3.944 5 C -0.167 4.167 6 C -0.115 4.115 7 C -0.094 4.094 8 C -0.728 4.728 9 S 2.799 3.201 10 O -0.980 6.980 11 O -0.976 6.976 12 N -0.864 5.864 13 C 0.133 3.867 14 C -0.591 4.591 15 H 0.092 0.908 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.189 1.189 22 C -0.093 4.093 23 H 0.082 0.918 24 H 0.122 0.878 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.189 0.811 29 H 0.186 0.814 30 H 0.155 0.845 31 H 0.254 0.746 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.028 -9.936 -8.323 18.377 hybrid contribution 0.084 -0.027 1.216 1.219 sum -12.945 -9.963 -7.107 17.814 Atomic orbital electron populations 1.21817 0.91370 1.04342 1.03165 1.23205 0.97134 0.80391 1.02797 1.86091 1.17712 1.31960 1.88643 1.19038 0.83520 0.93941 0.97885 1.21917 0.94000 0.99378 1.01368 1.21482 0.95438 0.97297 0.97243 1.21115 1.00028 0.92701 0.95603 1.30638 1.02747 1.22992 1.16444 1.01109 0.72792 0.73691 0.72477 1.93524 1.39551 1.87209 1.77691 1.93509 1.60771 1.65741 1.77601 1.55260 1.54569 1.46282 1.30244 1.18709 0.86587 0.91828 0.89544 1.21625 1.27408 1.06400 1.03651 0.90792 1.25871 0.95028 0.96248 1.01887 1.70050 1.29565 1.20313 1.36404 0.85335 0.77506 0.79002 0.78489 1.19612 1.20731 1.18900 1.20192 0.92719 0.97194 0.99198 0.91812 0.87780 0.92107 0.90261 0.90735 0.81062 0.81426 0.84545 0.74567 0.96936 0.96698 0.92213 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.04 0.58 5.46 71.98 0.39 0.97 16 3 O -0.33 -8.03 10.14 -92.51 -0.94 -8.97 16 4 C 0.10 2.82 6.69 22.50 0.15 2.97 16 5 C -0.15 -3.35 9.04 22.36 0.20 -3.14 16 6 C -0.10 -2.41 10.04 22.26 0.22 -2.18 16 7 C -0.07 -2.45 9.52 22.28 0.21 -2.23 16 8 C -0.64 -22.48 5.94 22.25 0.13 -22.35 16 9 S 2.71 106.54 5.74 -56.49 -0.32 106.21 16 10 O -0.99 -44.48 16.76 -128.00 -2.14 -46.62 16 11 O -0.99 -39.82 17.28 -128.00 -2.21 -42.04 16 12 N -1.10 -46.33 5.99 -190.80 -1.14 -47.47 16 13 C 0.26 13.10 5.98 85.63 0.51 13.61 16 14 C -0.55 -29.78 9.27 25.60 0.24 -29.54 16 15 H 0.07 3.77 7.65 -2.91 -0.02 3.75 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.92 -52.89 13.29 21.45 0.28 -52.61 16 18 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 C -0.07 -2.36 9.46 22.36 0.21 -2.15 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.08 0.90 7.66 -2.39 -0.02 0.89 16 27 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16 28 H 0.17 2.42 6.30 -2.91 -0.02 2.40 16 29 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.14 4.58 7.62 -2.91 -0.02 4.56 16 31 H 0.42 15.93 8.54 -96.75 -0.83 15.11 16 32 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.02 0.83 7.75 -2.39 -0.02 0.81 16 34 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.15 4.53 7.62 -2.91 -0.02 4.51 16 Total: -1.00 -70.56 316.91 -0.69 -71.25 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.28 Total: 20.01 kcal Atomic # 6 Polarization: -47.51 SS G_CDS: 3.48 Total: -44.04 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -0.86 Total: -100.07 kcal Atomic # 8 Polarization: -92.34 SS G_CDS: -5.29 Total: -97.63 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 106.54 SS G_CDS: -0.32 Total: 106.21 kcal Total: -70.56 -0.69 -71.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337194002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.803 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds