Wall clock time and date at job start Tue Mar 31 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99693 * 2 1 4 4 C 1.38752 * 120.05972 * 0.24756 * 3 2 1 5 5 C 1.38121 * 119.94447 * 180.31728 * 4 3 2 6 6 C 1.38285 * 120.05515 * 359.68652 * 5 4 3 7 7 C 1.38241 * 120.11398 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05368 * 0.02562 * 7 6 5 9 9 S 1.76196 * 120.02601 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40640 * 1.45888 * 9 8 7 11 11 O 1.42101 * 106.40221 * 228.54180 * 9 8 7 12 12 N 1.65597 * 107.22133 * 115.00048 * 9 8 7 13 13 C 1.46506 * 119.99791 * 64.99502 * 12 9 8 14 14 C 1.53001 * 109.46867 * 165.00419 * 13 12 9 15 15 C 1.50696 * 109.47153 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00210 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00088 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47230 * 60.00540 * 19 17 15 21 21 H 1.48501 * 109.46875 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47118 * 300.00122 * 19 17 15 23 23 H 1.09007 * 109.47298 * 60.00348 * 1 2 3 24 24 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47138 * 300.00219 * 1 2 3 26 26 H 1.08004 * 120.02529 * 0.02832 * 4 3 2 27 27 H 1.08004 * 119.96910 * 179.70270 * 5 4 3 28 28 H 1.08007 * 119.94434 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.97086 * 180.02562 * 7 6 5 30 30 H 0.96995 * 120.00100 * 245.27417 * 12 9 8 31 31 H 1.08998 * 109.47105 * 285.00387 * 13 12 9 32 32 H 1.09002 * 109.47033 * 45.00797 * 13 12 9 33 33 H 1.09002 * 109.46978 * 300.00344 * 14 13 12 34 34 H 1.08995 * 109.47247 * 60.00034 * 14 13 12 35 35 H 0.96992 * 120.00304 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0067 7 6 4.0559 2.5172 -0.0059 8 6 3.4311 1.2849 -0.0003 9 16 4.3929 -0.1914 0.0001 10 8 5.7539 0.2163 0.0287 11 8 3.8520 -1.0230 -1.0174 12 7 4.1057 -0.9633 1.4367 13 6 2.7684 -1.4819 1.7350 14 6 2.8497 -2.4537 2.9140 15 6 1.4742 -2.9877 3.2205 16 1 0.6269 -2.6665 2.6329 17 6 1.2976 -3.8873 4.2504 18 7 2.3294 -4.2789 4.9656 19 14 -0.4073 -4.5497 4.6298 20 1 -0.9390 -5.2594 3.4386 21 1 -0.3283 -5.4938 5.7734 22 1 -1.3097 -3.4232 4.9786 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2127 2.3203 0.0097 27 1 1.3338 4.5114 -0.0023 28 1 3.7921 4.6381 -0.0115 29 1 5.1344 2.5753 -0.0096 30 1 4.8219 -1.0685 2.0824 31 1 2.1066 -0.6546 1.9911 32 1 2.3775 -2.0029 0.8610 33 1 3.5115 -3.2811 2.6579 34 1 3.2406 -1.9328 3.7879 35 1 2.2051 -4.9114 5.6904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344004971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:19 Heat of formation + Delta-G solvation = -90.428707 kcal Electronic energy + Delta-G solvation = -20901.467104 eV Core-core repulsion = 17605.935153 eV Total energy + Delta-G solvation = -3295.531951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29775 -37.64119 -36.71396 -35.45562 -35.23894 -32.69953 -31.54651 -30.28918 -29.05068 -27.37174 -24.42576 -23.39407 -22.33748 -21.05420 -19.30787 -18.53000 -17.38352 -16.77321 -16.40705 -16.10825 -15.93588 -15.24148 -15.05541 -14.54115 -14.49195 -13.89312 -13.83171 -13.54464 -12.95854 -12.52825 -12.45762 -11.92146 -11.76718 -11.70247 -11.63022 -11.56202 -11.35025 -11.09703 -11.05395 -10.62623 -10.57655 -10.36710 -9.56773 -9.45203 -9.25404 -8.80012 -8.48165 -8.36940 -6.06009 -4.09039 0.66351 0.91928 1.23574 3.10526 3.27516 3.29121 3.34553 3.35675 3.58265 4.04680 4.40679 4.50180 4.60619 4.90498 4.92468 5.11570 5.18809 5.26784 5.30494 5.42020 5.57772 5.61092 5.89975 5.97737 6.00312 6.19767 6.36256 6.52597 6.65491 6.85674 7.11332 7.55192 7.60626 7.72434 7.93892 8.32242 8.96448 9.54709 11.05605 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.005411 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.428620 B = 5173.361078 C = 5953.328486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.227 3.773 4 C -0.230 4.230 5 C -0.031 4.031 6 C -0.184 4.184 7 C 0.013 3.987 8 C -0.708 4.708 9 S 2.700 3.300 10 O -0.977 6.977 11 O -0.951 6.951 12 N -1.109 6.109 13 C 0.127 3.873 14 C 0.016 3.984 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.057 0.943 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.415 0.585 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 15.293 -9.258 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.179 3.821 4 C -0.250 4.250 5 C -0.049 4.049 6 C -0.203 4.203 7 C -0.007 4.007 8 C -0.794 4.794 9 S 2.788 3.212 10 O -0.968 6.968 11 O -0.941 6.941 12 N -0.871 5.871 13 C 0.003 3.997 14 C -0.023 4.023 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.076 0.924 24 H 0.131 0.869 25 H 0.081 0.919 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.165 0.835 30 H 0.249 0.751 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.316 14.715 -9.919 17.795 hybrid contribution -1.460 0.328 0.953 1.774 sum -2.775 15.043 -8.966 17.731 Atomic orbital electron populations 1.23225 0.76964 1.05450 1.01327 1.86349 1.22859 1.25363 1.86282 1.18433 0.90632 0.85364 0.87713 1.21346 1.00508 0.92334 1.10764 1.21209 0.94843 0.97112 0.91736 1.21149 0.94046 0.98580 1.06542 1.20833 1.00577 0.90104 0.89145 1.30351 1.04378 1.20447 1.24200 1.01631 0.72660 0.73306 0.73607 1.93530 1.32648 1.83584 1.86988 1.93581 1.80041 1.64823 1.55690 1.55462 1.20894 1.72511 1.38225 1.21682 0.79246 0.97544 1.01244 1.19320 0.97870 0.93628 0.91473 1.21024 0.93421 1.25724 1.15761 0.92434 1.25000 0.96854 0.96354 0.96094 1.69945 1.29800 1.32875 1.20547 0.86624 0.84435 0.78802 0.77914 1.20125 1.21275 1.20292 0.92440 0.86922 0.91887 0.84579 0.85240 0.85122 0.83499 0.75059 0.93150 0.90930 0.95681 0.96021 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.61 5.59 -29.44 -0.16 -4.77 16 3 C 0.23 3.35 6.31 -39.22 -0.25 3.11 16 4 C -0.23 -2.69 9.04 -39.43 -0.36 -3.05 16 5 C -0.03 -0.31 10.04 -39.61 -0.40 -0.71 16 6 C -0.18 -1.95 10.04 -39.56 -0.40 -2.35 16 7 C 0.01 0.16 9.55 -39.61 -0.38 -0.22 16 8 C -0.71 -10.83 5.90 -39.43 -0.23 -11.06 16 9 S 2.70 46.89 5.46 -107.50 -0.59 46.31 16 10 O -0.98 -17.68 16.97 -57.17 -0.97 -18.65 16 11 O -0.95 -19.27 16.76 -62.57 -1.05 -20.32 16 12 N -1.11 -19.97 6.00 -10.61 -0.06 -20.04 16 13 C 0.13 2.62 4.45 -4.04 -0.02 2.60 16 14 C 0.02 0.40 5.12 -27.88 -0.14 0.25 16 15 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 19 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 24 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 26 H 0.14 1.23 6.30 -52.48 -0.33 0.90 16 27 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 28 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.15 1.68 7.33 -52.48 -0.38 1.30 16 30 H 0.41 6.86 8.66 -34.47 -0.30 6.56 16 31 H 0.05 0.98 6.67 -51.93 -0.35 0.63 16 32 H 0.07 1.53 7.14 -51.93 -0.37 1.16 16 33 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -34.11 307.76 -8.25 -42.36 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.18 Total: 2.98 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.59 Total: -22.99 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.67 Total: -45.41 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -2.18 Total: -43.75 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 46.89 SS G_CDS: -0.59 Total: 46.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.11 -8.25 -42.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344004971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.071 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds