Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99693 * 2 1 4 4 C 1.38752 * 120.05972 * 0.24756 * 3 2 1 5 5 C 1.38121 * 119.94447 * 180.31728 * 4 3 2 6 6 C 1.38285 * 120.05515 * 359.68652 * 5 4 3 7 7 C 1.38241 * 120.11398 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05368 * 0.02562 * 7 6 5 9 9 S 1.76196 * 120.02601 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40640 * 1.45888 * 9 8 7 11 11 O 1.42101 * 106.40221 * 228.54180 * 9 8 7 12 12 N 1.65597 * 107.22133 * 115.00048 * 9 8 7 13 13 C 1.46506 * 119.99791 * 64.99502 * 12 9 8 14 14 C 1.53001 * 109.46867 * 165.00419 * 13 12 9 15 15 C 1.50696 * 109.47153 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00210 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00088 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47230 * 60.00540 * 19 17 15 21 21 H 1.48501 * 109.46875 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47118 * 300.00122 * 19 17 15 23 23 H 1.09007 * 109.47298 * 60.00348 * 1 2 3 24 24 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47138 * 300.00219 * 1 2 3 26 26 H 1.08004 * 120.02529 * 0.02832 * 4 3 2 27 27 H 1.08004 * 119.96910 * 179.70270 * 5 4 3 28 28 H 1.08007 * 119.94434 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.97086 * 180.02562 * 7 6 5 30 30 H 0.96995 * 120.00100 * 245.27417 * 12 9 8 31 31 H 1.08998 * 109.47105 * 285.00387 * 13 12 9 32 32 H 1.09002 * 109.47033 * 45.00797 * 13 12 9 33 33 H 1.09002 * 109.46978 * 300.00344 * 14 13 12 34 34 H 1.08995 * 109.47247 * 60.00034 * 14 13 12 35 35 H 0.96992 * 120.00304 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0067 7 6 4.0559 2.5172 -0.0059 8 6 3.4311 1.2849 -0.0003 9 16 4.3929 -0.1914 0.0001 10 8 5.7539 0.2163 0.0287 11 8 3.8520 -1.0230 -1.0174 12 7 4.1057 -0.9633 1.4367 13 6 2.7684 -1.4819 1.7350 14 6 2.8497 -2.4537 2.9140 15 6 1.4742 -2.9877 3.2205 16 1 0.6269 -2.6665 2.6329 17 6 1.2976 -3.8873 4.2504 18 7 2.3294 -4.2789 4.9656 19 14 -0.4073 -4.5497 4.6298 20 1 -0.9390 -5.2594 3.4386 21 1 -0.3283 -5.4938 5.7734 22 1 -1.3097 -3.4232 4.9786 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 0.2127 2.3203 0.0097 27 1 1.3338 4.5114 -0.0023 28 1 3.7921 4.6381 -0.0115 29 1 5.1344 2.5753 -0.0096 30 1 4.8219 -1.0685 2.0824 31 1 2.1066 -0.6546 1.9911 32 1 2.3775 -2.0029 0.8610 33 1 3.5115 -3.2811 2.6579 34 1 3.2406 -1.9328 3.7879 35 1 2.2051 -4.9114 5.6904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344004971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = -115.565683 kcal Electronic energy + Delta-G solvation = -20902.557125 eV Core-core repulsion = 17605.935153 eV Total energy + Delta-G solvation = -3296.621972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25232 -38.67048 -38.07278 -36.96993 -36.90089 -34.69856 -32.47046 -31.21886 -30.93991 -28.23508 -26.38766 -24.37594 -23.25434 -22.90615 -20.58865 -19.69771 -18.77271 -18.18594 -17.95741 -17.38908 -17.05156 -16.61065 -16.37445 -15.95093 -15.45730 -15.40311 -15.32471 -14.75164 -14.36985 -13.84973 -13.41958 -13.36641 -13.21921 -13.20456 -13.09756 -12.93593 -12.74058 -12.53292 -12.43447 -12.30857 -12.08726 -11.60601 -11.41644 -11.30423 -10.59599 -10.45560 -10.24760 -9.42002 -8.17550 -6.28362 -0.56235 -0.16400 0.33245 1.44372 1.47729 1.55014 2.04283 2.19402 2.44752 2.51147 2.74486 3.17201 3.37268 3.80448 3.91448 4.17360 4.29942 4.33348 4.35363 4.41150 4.51049 4.62250 4.73482 4.79460 4.91369 5.01062 5.05476 5.19933 5.35730 5.53006 5.66524 5.69398 5.84284 6.06617 6.19691 6.27103 6.86544 7.40447 8.94785 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.005411 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.428620 B = 5173.361078 C = 5953.328486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.203 3.797 4 C -0.232 4.232 5 C -0.020 4.020 6 C -0.178 4.178 7 C -0.004 4.004 8 C -0.726 4.726 9 S 2.712 3.288 10 O -0.990 6.990 11 O -0.988 6.988 12 N -1.114 6.114 13 C 0.149 3.851 14 C 0.018 3.982 15 C -0.538 4.538 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.262 1.262 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.153 0.847 30 H 0.419 0.581 31 H 0.064 0.936 32 H 0.064 0.936 33 H -0.004 1.004 34 H 0.005 0.995 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 17.857 -9.610 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.155 3.845 4 C -0.251 4.251 5 C -0.038 4.038 6 C -0.196 4.196 7 C -0.023 4.023 8 C -0.817 4.817 9 S 2.805 3.195 10 O -0.980 6.980 11 O -0.978 6.978 12 N -0.874 5.874 13 C 0.023 3.977 14 C -0.020 4.020 15 C -0.577 4.577 16 H 0.089 0.911 17 C -0.197 4.197 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.187 1.187 23 H 0.101 0.899 24 H 0.128 0.872 25 H 0.095 0.905 26 H 0.181 0.819 27 H 0.190 0.810 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.254 0.746 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.454 17.249 -10.280 20.374 hybrid contribution -0.772 -0.332 1.027 1.327 sum -4.226 16.916 -9.253 19.739 Atomic orbital electron populations 1.23486 0.75304 1.05998 1.03219 1.86283 1.24834 1.26438 1.86660 1.18719 0.90648 0.86246 0.88900 1.21731 1.01833 0.91779 1.09769 1.21774 0.94989 0.98042 0.89021 1.21604 0.94516 0.99017 1.04496 1.21095 1.01321 0.90203 0.89729 1.29889 1.04701 1.19515 1.27555 1.00876 0.72436 0.73630 0.72550 1.93500 1.33758 1.83845 1.86943 1.93527 1.80566 1.66878 1.56801 1.55361 1.20131 1.73394 1.38538 1.21276 0.80625 0.96874 0.98875 1.19213 0.96747 0.93533 0.92557 1.21498 0.94508 1.25766 1.15893 0.91107 1.25965 1.01169 0.96654 0.95914 1.70093 1.32321 1.33690 1.21240 0.85478 0.79300 0.78381 0.77746 1.19172 1.21345 1.18671 0.89947 0.87208 0.90539 0.81947 0.80996 0.81639 0.82926 0.74601 0.91758 0.91742 0.98513 0.97714 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.40 16 2 O -0.33 -10.05 5.59 -82.85 -0.46 -10.52 16 3 C 0.20 5.73 6.31 22.51 0.14 5.88 16 4 C -0.23 -4.64 9.04 22.36 0.20 -4.44 16 5 C -0.02 -0.32 10.04 22.25 0.22 -0.09 16 6 C -0.18 -3.07 10.04 22.28 0.22 -2.85 16 7 C 0.00 -0.10 9.55 22.25 0.21 0.11 16 8 C -0.73 -21.82 5.90 22.37 0.13 -21.69 16 9 S 2.71 96.90 5.46 -56.49 -0.31 96.60 16 10 O -0.99 -36.67 16.97 -128.00 -2.17 -38.84 16 11 O -0.99 -41.53 16.76 -122.84 -2.06 -43.59 16 12 N -1.11 -41.65 6.00 -187.48 -1.12 -42.78 16 13 C 0.15 6.28 4.45 86.38 0.38 6.67 16 14 C 0.02 0.95 5.12 29.85 0.15 1.10 16 15 C -0.54 -29.40 9.11 25.60 0.23 -29.17 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 0.06 5.46 84.66 0.46 0.52 16 18 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 19 Si 0.97 42.63 29.54 68.60 2.03 44.65 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H 0.08 1.26 7.67 -2.38 -0.02 1.24 16 24 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.08 1.35 7.65 -2.39 -0.02 1.33 16 26 H 0.16 2.27 6.30 -2.91 -0.02 2.25 16 27 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 28 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.15 3.35 7.33 -2.91 -0.02 3.32 16 30 H 0.42 14.61 8.66 -96.75 -0.84 13.77 16 31 H 0.06 2.53 6.67 -2.39 -0.02 2.51 16 32 H 0.06 2.82 7.14 -2.39 -0.02 2.80 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -75.12 307.76 -0.06 -75.18 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.28 Total: 17.34 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 3.48 Total: -42.56 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -0.84 Total: -98.25 kcal Atomic # 8 Polarization: -88.25 SS G_CDS: -4.69 Total: -92.95 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 96.90 SS G_CDS: -0.31 Total: 96.60 kcal Total: -75.12 -0.06 -75.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344004971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.390 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds