Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47425 * 112.91537 * 3 2 1 5 5 C 1.37100 * 119.99585 * 263.95306 * 4 3 2 6 6 H 1.08001 * 119.99740 * 200.21400 * 5 4 3 7 7 C 1.38948 * 120.00560 * 20.21606 * 5 4 3 8 8 N 1.31416 * 119.99782 * 21.42570 * 7 5 4 9 9 Si 1.86799 * 120.00235 * 201.42481 * 7 5 4 10 10 H 1.48503 * 109.47129 * 89.99839 * 9 7 5 11 11 H 1.48502 * 109.47242 * 209.99572 * 9 7 5 12 12 H 1.48494 * 109.47076 * 329.99741 * 9 7 5 13 13 C 1.34768 * 120.00408 * 83.94704 * 4 3 2 14 14 O 1.21300 * 120.00487 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99865 * 0.02562 * 13 4 3 16 16 C 1.50702 * 109.47210 * 180.02562 * 15 13 4 17 17 N 1.29745 * 126.28759 * 269.99501 * 16 15 13 18 18 O 1.41355 * 109.73876 * 179.97438 * 17 16 15 19 19 C 1.34826 * 109.33056 * 0.02562 * 18 17 16 20 20 C 1.38970 * 133.44754 * 180.02562 * 19 18 17 21 21 C 1.37804 * 119.79663 * 179.97438 * 20 19 18 22 22 C 1.38781 * 120.59406 * 359.97438 * 21 20 19 23 23 C 1.36621 * 120.51859 * 0.02562 * 22 21 20 24 24 C 1.39683 * 119.79020 * 359.97438 * 23 22 21 25 25 H 1.09008 * 109.46945 * 352.91327 * 3 2 1 26 26 H 1.09007 * 109.46996 * 232.91746 * 3 2 1 27 27 H 0.96999 * 119.99996 * 180.02562 * 8 7 5 28 28 H 1.08994 * 109.47651 * 59.99505 * 15 13 4 29 29 H 1.09006 * 109.47139 * 299.99922 * 15 13 4 30 30 H 1.08003 * 120.10455 * 359.96892 * 20 19 18 31 31 H 1.07997 * 119.69893 * 179.97438 * 21 20 19 32 32 H 1.08007 * 119.73715 * 179.71936 * 22 21 20 33 33 H 1.08003 * 120.10401 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.5386 -1.2721 5 6 3.4430 -0.3134 -2.2887 6 1 4.0921 0.0279 -3.0815 7 6 2.9594 -1.6160 -2.2990 8 7 1.8768 -1.9203 -1.6191 9 14 3.8480 -2.9345 -3.2795 10 1 4.8705 -3.5849 -2.4212 11 1 2.8696 -3.9518 -3.7413 12 1 4.5102 -2.3150 -4.4554 13 6 3.2042 1.8710 -1.4432 14 8 3.6080 2.3165 -2.4968 15 6 2.8234 2.8076 -0.3257 16 6 3.0347 4.2320 -0.7700 17 7 4.1231 4.9252 -0.6347 18 8 3.9357 6.2183 -1.1739 19 6 2.6819 6.3223 -1.6588 20 6 1.9807 7.3467 -2.2834 21 6 0.6752 7.1433 -2.6749 22 6 0.0527 5.9232 -2.4515 23 6 0.7246 4.9034 -1.8390 24 6 2.0486 5.0890 -1.4344 25 1 2.9718 -1.0191 0.1268 26 1 2.9711 0.6205 0.8199 27 1 1.5393 -2.8297 -1.6260 28 1 3.4435 2.6030 0.5471 29 1 1.7745 2.6593 -0.0688 30 1 2.4574 8.2993 -2.4615 31 1 0.1316 7.9406 -3.1598 32 1 -0.9725 5.7804 -2.7599 33 1 0.2335 3.9568 -1.6681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355266025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = 71.149709 kcal Electronic energy + Delta-G solvation = -21516.318721 eV Core-core repulsion = 18124.642136 eV Total energy + Delta-G solvation = -3391.676586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60539 -38.99347 -37.63357 -35.97467 -34.62014 -34.06571 -32.03156 -30.59503 -29.97592 -29.18628 -27.51799 -24.83653 -23.20061 -22.59286 -20.98807 -19.11894 -18.04177 -17.43909 -16.93470 -16.73399 -16.38748 -15.62287 -15.45306 -14.75834 -14.41653 -14.36971 -13.94435 -13.57212 -13.17710 -13.05716 -12.86502 -12.34264 -12.23248 -12.18003 -11.92615 -11.68409 -11.44708 -11.21961 -11.12928 -11.05372 -10.79726 -10.66764 -10.45834 -10.41628 -9.36426 -8.90980 -8.77803 -8.53586 -8.15347 -6.60594 -4.11781 0.72564 1.32871 2.19028 2.68669 3.03565 3.18042 3.21883 3.40900 3.60601 3.67049 3.85011 4.03671 4.16531 4.41076 4.63776 4.68582 4.80283 4.89809 5.04906 5.13483 5.25967 5.37856 5.44024 5.49675 5.54748 5.87180 5.88729 6.00343 6.14669 6.27742 6.35380 6.36650 6.67084 7.38552 7.41834 7.75997 8.15830 8.61765 8.87287 9.05791 9.57013 10.45625 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.004705 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.367525 B = 5949.806280 C = 6242.704576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.242 3.758 3 C 0.218 3.782 4 N -0.436 5.436 5 C -0.315 4.315 6 H 0.109 0.891 7 C 0.035 3.965 8 N -0.874 5.874 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.461 3.539 14 O -0.561 6.561 15 C -0.076 4.076 16 C 0.171 3.829 17 N -0.281 5.281 18 O -0.098 6.098 19 C 0.083 3.917 20 C -0.131 4.131 21 C -0.065 4.065 22 C -0.154 4.154 23 C -0.031 4.031 24 C -0.180 4.180 25 H 0.128 0.872 26 H 0.087 0.913 27 H 0.275 0.725 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 10.519 4.028 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.076 4.076 3 C 0.090 3.910 4 N -0.157 5.157 5 C -0.442 4.442 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.247 3.753 14 O -0.442 6.442 15 C -0.117 4.117 16 C -0.010 4.010 17 N -0.025 5.025 18 O -0.107 6.107 19 C 0.029 3.971 20 C -0.151 4.151 21 C -0.085 4.085 22 C -0.172 4.172 23 C -0.051 4.051 24 C -0.184 4.184 25 H 0.145 0.855 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.872 10.692 3.934 11.546 hybrid contribution -0.092 -1.019 -0.765 1.277 sum -1.964 9.673 3.170 10.367 Atomic orbital electron populations 1.80913 1.13472 1.10885 1.09416 1.29252 0.95315 0.91224 0.91813 1.18767 0.81772 1.03366 0.87101 1.43559 1.56421 1.03683 1.12026 1.19724 1.28039 0.91145 1.05255 0.87319 1.25308 0.94724 0.99024 0.97896 1.69833 1.17906 1.21063 1.42396 0.85873 0.78999 0.79760 0.79872 1.20008 1.21033 1.19264 1.19576 0.84905 0.82591 0.88215 1.90620 1.49710 1.75619 1.28276 1.20366 1.04764 0.86250 1.00365 1.23868 0.89840 0.95737 0.91600 1.79845 1.17947 0.88440 1.16273 1.89117 1.26064 1.28618 1.66936 1.20280 0.85964 0.95430 0.95422 1.19982 0.94411 0.97777 1.02894 1.21083 0.93316 0.97405 0.96657 1.20770 1.00918 0.93336 1.02194 1.20531 0.91541 0.99326 0.93685 1.20669 0.97143 0.92952 1.07597 0.85465 0.89525 0.91470 0.86932 0.87285 0.84631 0.84558 0.84965 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.26 18.54 42.15 0.78 -9.48 16 2 C 0.24 4.91 12.82 -20.76 -0.27 4.65 16 3 C 0.22 3.94 4.91 -6.83 -0.03 3.91 16 4 N -0.44 -9.63 2.60 -117.93 -0.31 -9.94 16 5 C -0.31 -7.80 9.27 -14.93 -0.14 -7.94 16 6 H 0.11 2.89 7.43 -52.49 -0.39 2.50 16 7 C 0.03 0.83 4.84 -17.47 -0.08 0.74 16 8 N -0.87 -21.13 9.58 55.50 0.53 -20.59 16 9 Si 0.93 19.08 29.60 -169.99 -5.03 14.04 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.46 10.07 7.56 -10.99 -0.08 9.98 16 14 O -0.56 -14.64 15.71 5.54 0.09 -14.55 16 15 C -0.08 -1.28 4.91 -29.03 -0.14 -1.42 16 16 C 0.17 3.12 5.95 -80.11 -0.48 2.64 16 17 N -0.28 -5.41 12.81 34.91 0.45 -4.96 16 18 O -0.10 -1.80 12.06 7.67 0.09 -1.71 16 19 C 0.08 1.36 7.48 -38.48 -0.29 1.07 16 20 C -0.13 -1.64 10.07 -39.47 -0.40 -2.04 16 21 C -0.07 -0.70 10.02 -39.54 -0.40 -1.09 16 22 C -0.15 -1.83 9.97 -39.96 -0.40 -2.23 16 23 C -0.03 -0.46 10.05 -39.63 -0.40 -0.85 16 24 C -0.18 -3.08 6.32 -105.17 -0.67 -3.75 16 25 H 0.13 2.37 6.63 -51.92 -0.34 2.02 16 26 H 0.09 1.13 6.69 -51.92 -0.35 0.79 16 27 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 28 H 0.11 1.52 7.42 -51.93 -0.39 1.13 16 29 H 0.11 1.63 7.49 -51.93 -0.39 1.24 16 30 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 302.60 15.07 4.56 4.56 Total: -1.00 -31.98 302.60 -5.29 -37.27 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -2.68 Total: 1.69 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -3.77 Total: 3.68 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.45 Total: -44.97 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.18 Total: -16.26 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.98 -5.29 -37.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355266025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.416 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds