Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47425 * 112.91537 * 3 2 1 5 5 C 1.37100 * 119.99585 * 263.95306 * 4 3 2 6 6 H 1.08001 * 119.99740 * 200.21400 * 5 4 3 7 7 C 1.38948 * 120.00560 * 20.21606 * 5 4 3 8 8 N 1.31416 * 119.99782 * 21.42570 * 7 5 4 9 9 Si 1.86799 * 120.00235 * 201.42481 * 7 5 4 10 10 H 1.48503 * 109.47129 * 89.99839 * 9 7 5 11 11 H 1.48502 * 109.47242 * 209.99572 * 9 7 5 12 12 H 1.48494 * 109.47076 * 329.99741 * 9 7 5 13 13 C 1.34768 * 120.00408 * 83.94704 * 4 3 2 14 14 O 1.21300 * 120.00487 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99865 * 0.02562 * 13 4 3 16 16 C 1.50702 * 109.47210 * 180.02562 * 15 13 4 17 17 N 1.29745 * 126.28759 * 269.99501 * 16 15 13 18 18 O 1.41355 * 109.73876 * 179.97438 * 17 16 15 19 19 C 1.34826 * 109.33056 * 0.02562 * 18 17 16 20 20 C 1.38970 * 133.44754 * 180.02562 * 19 18 17 21 21 C 1.37804 * 119.79663 * 179.97438 * 20 19 18 22 22 C 1.38781 * 120.59406 * 359.97438 * 21 20 19 23 23 C 1.36621 * 120.51859 * 0.02562 * 22 21 20 24 24 C 1.39683 * 119.79020 * 359.97438 * 23 22 21 25 25 H 1.09008 * 109.46945 * 352.91327 * 3 2 1 26 26 H 1.09007 * 109.46996 * 232.91746 * 3 2 1 27 27 H 0.96999 * 119.99996 * 180.02562 * 8 7 5 28 28 H 1.08994 * 109.47651 * 59.99505 * 15 13 4 29 29 H 1.09006 * 109.47139 * 299.99922 * 15 13 4 30 30 H 1.08003 * 120.10455 * 359.96892 * 20 19 18 31 31 H 1.07997 * 119.69893 * 179.97438 * 21 20 19 32 32 H 1.08007 * 119.73715 * 179.71936 * 22 21 20 33 33 H 1.08003 * 120.10401 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.5386 -1.2721 5 6 3.4430 -0.3134 -2.2887 6 1 4.0921 0.0279 -3.0815 7 6 2.9594 -1.6160 -2.2990 8 7 1.8768 -1.9203 -1.6191 9 14 3.8480 -2.9345 -3.2795 10 1 4.8705 -3.5849 -2.4212 11 1 2.8696 -3.9518 -3.7413 12 1 4.5102 -2.3150 -4.4554 13 6 3.2042 1.8710 -1.4432 14 8 3.6080 2.3165 -2.4968 15 6 2.8234 2.8076 -0.3257 16 6 3.0347 4.2320 -0.7700 17 7 4.1231 4.9252 -0.6347 18 8 3.9357 6.2183 -1.1739 19 6 2.6819 6.3223 -1.6588 20 6 1.9807 7.3467 -2.2834 21 6 0.6752 7.1433 -2.6749 22 6 0.0527 5.9232 -2.4515 23 6 0.7246 4.9034 -1.8390 24 6 2.0486 5.0890 -1.4344 25 1 2.9718 -1.0191 0.1268 26 1 2.9711 0.6205 0.8199 27 1 1.5393 -2.8297 -1.6260 28 1 3.4435 2.6030 0.5471 29 1 1.7745 2.6593 -0.0688 30 1 2.4574 8.2993 -2.4615 31 1 0.1316 7.9406 -3.1598 32 1 -0.9725 5.7804 -2.7599 33 1 0.2335 3.9568 -1.6681 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355266025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = 51.176928 kcal Electronic energy + Delta-G solvation = -21517.184806 eV Core-core repulsion = 18124.642136 eV Total energy + Delta-G solvation = -3392.542670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.82137 -40.68084 -38.69602 -37.67327 -36.26214 -35.50757 -33.83584 -31.66191 -31.09975 -30.61130 -29.11865 -26.59499 -24.28887 -23.69447 -22.44276 -20.60669 -19.77366 -18.57813 -18.39000 -18.12490 -17.93923 -17.00966 -16.49386 -16.44169 -15.99698 -15.82029 -15.09667 -14.82187 -14.75438 -14.61387 -14.28709 -13.91259 -13.54188 -13.32383 -13.28200 -13.15371 -13.11324 -12.87436 -12.42299 -12.34937 -12.17953 -12.16290 -12.10512 -12.02389 -11.14908 -10.58538 -9.96464 -9.95833 -9.63260 -8.44273 -6.01572 -0.39954 0.26388 0.94286 1.37277 1.45763 1.49490 1.58317 1.76287 2.00513 2.25276 2.35047 2.59740 2.91403 2.96781 3.12674 3.21256 3.53624 3.57814 3.85184 4.02894 4.10314 4.19477 4.28215 4.31267 4.42465 4.61902 4.76490 4.86935 4.91197 5.10389 5.27211 5.38220 5.46497 5.68830 5.97704 6.17508 6.34135 7.01133 7.06523 7.26740 7.81889 8.59465 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.004705 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.367525 B = 5949.806280 C = 6242.704576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.255 3.745 3 C 0.215 3.785 4 N -0.445 5.445 5 C -0.341 4.341 6 H 0.079 0.921 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.985 3.015 10 H -0.258 1.258 11 H -0.285 1.285 12 H -0.281 1.281 13 C 0.457 3.543 14 O -0.613 6.613 15 C -0.065 4.065 16 C 0.160 3.840 17 N -0.311 5.311 18 O -0.114 6.114 19 C 0.055 3.945 20 C -0.131 4.131 21 C -0.048 4.048 22 C -0.145 4.145 23 C -0.054 4.054 24 C -0.210 4.210 25 H 0.126 0.874 26 H 0.145 0.855 27 H 0.276 0.724 28 H 0.150 0.850 29 H 0.129 0.871 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 11.402 4.368 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.063 4.063 3 C 0.089 3.911 4 N -0.164 5.164 5 C -0.469 4.469 6 H 0.097 0.903 7 C -0.191 4.191 8 N -0.524 5.524 9 Si 0.809 3.191 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.206 1.206 13 C 0.245 3.755 14 O -0.498 6.498 15 C -0.106 4.106 16 C -0.021 4.021 17 N -0.055 5.055 18 O -0.124 6.124 19 C 0.001 3.999 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.163 4.163 23 C -0.074 4.074 24 C -0.214 4.214 25 H 0.143 0.857 26 H 0.163 0.837 27 H 0.086 0.914 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.182 0.818 31 H 0.203 0.797 32 H 0.182 0.818 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.040 11.559 4.315 12.707 hybrid contribution 0.170 -1.206 -0.957 1.549 sum -2.871 10.353 3.358 11.257 Atomic orbital electron populations 1.80917 1.14523 1.12087 1.10436 1.29622 0.95672 0.90183 0.90817 1.19161 0.80440 1.04526 0.86954 1.43692 1.56192 1.03718 1.12823 1.19550 1.28825 0.92365 1.06121 0.90348 1.25846 0.94882 0.99825 0.98508 1.69904 1.18205 1.21339 1.42911 0.85053 0.78160 0.77396 0.78470 1.18276 1.21053 1.20585 1.20324 0.83417 0.82990 0.88748 1.90583 1.51795 1.76621 1.30809 1.20343 1.06501 0.84372 0.99365 1.24150 0.90189 0.96216 0.91570 1.79733 1.18884 0.89233 1.17674 1.89031 1.27495 1.28262 1.67611 1.20864 0.85440 0.96650 0.96910 1.20533 0.95017 0.97934 1.01555 1.21673 0.92441 0.97962 0.94592 1.21252 1.02134 0.92838 1.00063 1.20718 0.91085 1.00420 0.95211 1.20901 0.98184 0.93314 1.08984 0.85655 0.83735 0.91368 0.83278 0.85337 0.81802 0.79725 0.81786 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.52 18.54 20.01 0.37 -21.15 16 2 C 0.25 10.02 12.82 89.44 1.15 11.17 16 3 C 0.22 7.47 4.91 84.58 0.42 7.88 16 4 N -0.44 -19.62 2.60 -645.42 -1.68 -21.30 16 5 C -0.34 -17.24 9.27 84.04 0.78 -16.47 16 6 H 0.08 4.38 7.43 -2.91 -0.02 4.36 16 7 C 0.01 0.60 4.84 84.93 0.41 1.01 16 8 N -0.89 -42.31 9.58 21.66 0.21 -42.10 16 9 Si 0.98 39.06 29.60 68.60 2.03 41.09 16 10 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 11 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 12 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 13 C 0.46 20.19 7.56 87.66 0.66 20.85 16 14 O -0.61 -33.27 15.71 -3.09 -0.05 -33.32 16 15 C -0.07 -2.14 4.91 29.10 0.14 -2.00 16 16 C 0.16 5.91 5.95 45.04 0.27 6.17 16 17 N -0.31 -12.27 12.81 -43.47 -0.56 -12.83 16 18 O -0.11 -4.29 12.06 29.82 0.36 -3.93 16 19 C 0.05 1.78 7.48 22.98 0.17 1.96 16 20 C -0.13 -2.97 10.07 22.34 0.23 -2.74 16 21 C -0.05 -0.83 10.02 22.30 0.22 -0.61 16 22 C -0.14 -3.02 9.97 22.02 0.22 -2.80 16 23 C -0.05 -1.57 10.05 22.24 0.22 -1.35 16 24 C -0.21 -7.24 6.32 -20.22 -0.13 -7.36 16 25 H 0.13 4.47 6.63 -2.38 -0.02 4.45 16 26 H 0.15 3.29 6.69 -2.38 -0.02 3.28 16 27 H 0.28 12.76 8.31 -92.71 -0.77 11.99 16 28 H 0.15 3.69 7.42 -2.39 -0.02 3.67 16 29 H 0.13 3.69 7.49 -2.38 -0.02 3.67 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -73.29 302.60 6.62 -66.67 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.17 Total: 11.17 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 4.76 Total: 15.71 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -1.65 Total: -97.38 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: 0.31 Total: -37.26 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -73.29 6.62 -66.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355266025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.847 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds