Wall clock time and date at job start Tue Mar 31 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99733 * 2 1 4 4 H 1.48494 * 109.47519 * 239.99926 * 3 2 1 5 5 H 1.48499 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47128 * 120.00123 * 3 2 1 7 7 C 1.40126 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.46152 * 119.99981 * 359.97438 * 7 2 1 10 10 O 1.21745 * 120.00189 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00131 * 179.97438 * 9 7 2 12 12 C 1.39519 * 120.00134 * 174.65904 * 11 9 7 13 13 C 1.39109 * 120.05255 * 145.20055 * 12 11 9 14 14 C 1.38076 * 120.02588 * 179.97438 * 13 12 11 15 15 C 1.38251 * 120.14212 * 0.25715 * 14 13 12 16 16 C 1.38845 * 120.10421 * 359.49186 * 15 14 13 17 17 O 1.35892 * 120.01311 * 180.25532 * 16 15 14 18 18 C 1.35691 * 118.00168 * 75.32358 * 17 16 15 19 19 C 1.39278 * 120.13983 * 185.03541 * 18 17 16 20 20 C 1.38641 * 117.92186 * 180.02562 * 19 18 17 21 21 C 1.38760 * 118.01638 * 0.02562 * 20 19 18 22 22 N 1.31828 * 119.98242 * 0.02562 * 21 20 19 23 23 N 1.28352 * 122.25817 * 359.70572 * 22 21 20 24 24 C 1.38586 * 119.97421 * 0.50765 * 16 15 14 25 25 H 0.96996 * 119.99956 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00033 * 354.66594 * 11 9 7 27 27 H 1.07997 * 119.98687 * 0.02562 * 13 12 11 28 28 H 1.08000 * 119.92711 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.94732 * 179.72335 * 15 14 13 30 30 H 1.08004 * 121.04567 * 359.97438 * 19 18 17 31 31 H 1.07991 * 120.99057 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.01055 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.07071 * 179.72650 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6966 -1.2124 5 1 1.2752 2.7465 0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0071 -1.2135 -0.0005 8 1 3.0871 -1.2133 -0.0010 9 6 1.2764 -2.4792 -0.0005 10 8 0.0589 -2.4793 0.0004 11 7 1.9503 -3.6464 -0.0016 12 6 1.2574 -4.8521 0.1109 13 6 1.7099 -5.9813 -0.5640 14 6 1.0240 -7.1744 -0.4519 15 6 -0.1162 -7.2492 0.3263 16 6 -0.5700 -6.1270 1.0065 17 8 -1.6881 -6.2040 1.7750 18 6 -1.5930 -6.8255 2.9775 19 6 -2.7318 -7.0225 3.7548 20 6 -2.5818 -7.6620 4.9757 21 6 -1.3074 -8.0655 5.3480 22 7 -0.2842 -7.8366 4.5488 23 7 -0.4182 -7.2495 3.4153 24 6 0.1148 -4.9272 0.8972 25 1 -0.4850 0.8400 0.0004 26 1 2.9171 -3.6482 -0.0804 27 1 2.5984 -5.9248 -1.1753 28 1 1.3765 -8.0499 -0.9769 29 1 -0.6528 -8.1829 0.4082 30 1 -3.7014 -6.6869 3.4174 31 1 -3.4315 -7.8408 5.6179 32 1 -1.1537 -8.5669 6.2921 33 1 -0.2392 -4.0523 1.4222 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356752845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:04 Heat of formation + Delta-G solvation = -1.964682 kcal Electronic energy + Delta-G solvation = -21028.493425 eV Core-core repulsion = 17633.646361 eV Total energy + Delta-G solvation = -3394.847063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.45417 -41.11595 -40.00307 -38.25742 -35.26662 -34.54300 -34.21564 -32.88989 -31.24756 -30.49329 -28.26062 -25.99552 -25.42804 -24.16035 -23.29644 -21.82509 -20.26617 -19.32364 -18.68660 -17.78644 -17.72044 -17.47771 -17.17957 -16.96830 -16.08327 -15.86302 -15.66670 -15.20687 -14.99035 -14.58053 -14.39014 -14.18324 -13.95530 -13.43145 -13.22153 -12.78166 -12.77569 -12.72952 -12.38035 -12.36803 -12.09927 -11.30261 -11.14140 -10.90047 -10.67469 -10.37790 -10.05935 -9.69285 -8.88093 -8.40145 -6.99175 -0.22942 -0.05712 0.13252 0.42993 1.37727 1.41103 1.53594 1.81085 2.18717 2.33327 2.51534 2.77818 2.93523 3.08762 3.42236 3.53572 3.78081 3.95621 3.99786 4.10217 4.14501 4.27422 4.53375 4.55556 4.71940 4.78686 4.87534 5.21623 5.23716 5.30029 5.39323 5.41327 5.61060 5.74504 6.11813 6.17743 6.37270 6.73791 7.28765 7.63241 8.30480 8.53406 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.004099 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.186720 B = 6829.929183 C = 7568.037098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.250 1.250 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.526 3.474 10 O -0.609 6.609 11 N -0.691 5.691 12 C 0.174 3.826 13 C -0.157 4.157 14 C -0.070 4.070 15 C -0.155 4.155 16 C 0.094 3.906 17 O -0.259 6.259 18 C 0.233 3.767 19 C -0.140 4.140 20 C -0.061 4.061 21 C 0.012 3.988 22 N -0.250 5.250 23 N -0.324 5.324 24 C -0.155 4.155 25 H 0.278 0.722 26 H 0.411 0.589 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.139 0.861 30 H 0.179 0.821 31 H 0.213 0.787 32 H 0.219 0.781 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 -15.870 7.521 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.174 1.174 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.601 4.601 8 H 0.114 0.886 9 C 0.333 3.667 10 O -0.494 6.494 11 N -0.337 5.337 12 C 0.076 3.924 13 C -0.178 4.178 14 C -0.088 4.088 15 C -0.174 4.174 16 C 0.052 3.948 17 O -0.162 6.162 18 C 0.048 3.952 19 C -0.169 4.169 20 C -0.089 4.089 21 C -0.155 4.155 22 N -0.091 5.091 23 N -0.178 5.178 24 C -0.177 4.177 25 H 0.088 0.912 26 H 0.247 0.753 27 H 0.175 0.825 28 H 0.192 0.808 29 H 0.157 0.843 30 H 0.197 0.803 31 H 0.230 0.770 32 H 0.235 0.765 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.480 -15.669 7.067 17.253 hybrid contribution -0.940 1.282 0.145 1.596 sum -2.420 -14.387 7.212 16.275 Atomic orbital electron populations 1.70156 1.09711 1.29492 1.34986 1.27066 0.95561 1.05161 0.90998 0.84979 0.78157 0.74153 0.80483 1.17389 1.19801 1.17820 1.21403 0.95134 0.89461 1.54121 0.88625 1.18809 0.87208 0.83906 0.76728 1.90615 1.15767 1.87205 1.55862 1.43697 1.10363 1.03667 1.75925 1.17968 0.93025 0.87649 0.93777 1.21355 1.03713 0.91950 1.00787 1.21158 0.92836 0.98045 0.96774 1.21279 0.98811 0.96913 1.00411 1.18435 0.87777 0.94002 0.94573 1.84566 1.33343 1.72262 1.26075 1.22185 0.93781 0.92214 0.86975 1.22038 0.98738 1.00962 0.95160 1.22927 1.00444 0.91520 0.93974 1.25042 0.89960 0.98608 1.01935 1.72748 1.30731 1.07870 0.97771 1.73109 1.21587 1.12652 1.10489 1.20967 0.97515 0.97174 1.02022 0.91202 0.75262 0.82492 0.80755 0.84277 0.80326 0.77003 0.76469 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.93 11.82 21.85 0.26 -49.68 16 2 C 0.03 1.58 5.50 85.33 0.47 2.05 16 3 Si 1.00 40.48 29.56 68.60 2.03 42.51 16 4 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.57 -32.02 9.54 24.78 0.24 -31.78 16 8 H 0.10 4.76 7.85 -2.91 -0.02 4.73 16 9 C 0.53 31.25 7.46 86.30 0.64 31.90 16 10 O -0.61 -41.54 12.80 -4.49 -0.06 -41.60 16 11 N -0.69 -33.00 5.32 -307.59 -1.63 -34.63 16 12 C 0.17 7.81 6.25 38.29 0.24 8.05 16 13 C -0.16 -5.31 9.97 22.44 0.22 -5.09 16 14 C -0.07 -2.04 10.03 22.23 0.22 -1.81 16 15 C -0.15 -5.22 9.70 22.42 0.22 -5.00 16 16 C 0.09 3.97 5.13 22.50 0.12 4.09 16 17 O -0.26 -10.36 9.98 -33.45 -0.33 -10.69 16 18 C 0.23 7.80 7.46 84.86 0.63 8.44 16 19 C -0.14 -3.09 10.16 22.62 0.23 -2.86 16 20 C -0.06 -0.84 10.20 22.49 0.23 -0.61 16 21 C 0.01 0.21 11.31 84.82 0.96 1.17 16 22 N -0.25 -7.41 11.49 -57.21 -0.66 -8.06 16 23 N -0.32 -11.61 10.37 -170.20 -1.76 -13.37 16 24 C -0.16 -7.69 8.58 22.51 0.19 -7.50 16 25 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 26 H 0.41 16.23 8.80 -92.71 -0.82 15.41 16 27 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.21 0.52 8.06 -2.92 -0.02 0.50 16 32 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.09 5.32 6.52 -2.91 -0.02 5.30 16 Total: -1.00 -88.22 303.74 2.80 -85.42 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.35 Total: 29.06 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 4.61 Total: 1.04 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.80 Total: -105.74 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.39 Total: -52.29 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -88.22 2.80 -85.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356752845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.455 kcal (2) G-P(sol) polarization free energy of solvation -88.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds