Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48498 * 109.46652 * 269.99597 * 3 2 1 5 5 H 1.48495 * 109.47192 * 29.99503 * 3 2 1 6 6 H 1.48497 * 109.47268 * 149.99905 * 3 2 1 7 7 C 1.38640 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99721 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.35774 * 116.99982 * 185.26145 * 9 7 2 11 11 C 1.38918 * 119.99672 * 186.12065 * 10 9 7 12 12 C 1.37994 * 120.00304 * 180.22830 * 11 10 9 13 13 C 1.38952 * 119.99026 * 359.49753 * 12 11 10 14 14 N 1.39875 * 119.99764 * 180.23267 * 13 12 11 15 15 C 1.34774 * 120.00257 * 35.83444 * 14 13 12 16 16 O 1.21502 * 119.99945 * 355.26373 * 15 14 13 17 17 C 1.48398 * 120.00090 * 175.26920 * 15 14 13 18 18 C 1.39565 * 120.55455 * 179.97438 * 17 15 14 19 19 C 1.38743 * 118.26344 * 180.02562 * 18 17 15 20 20 N 1.32212 * 119.15009 * 0.02562 * 19 18 17 21 21 C 1.31881 * 121.04137 * 359.97438 * 20 19 18 22 22 N 1.31577 * 121.92148 * 359.71775 * 21 20 19 23 23 C 1.38954 * 119.99966 * 0.24786 * 13 12 11 24 24 C 1.37986 * 119.99031 * 0.02562 * 23 13 12 25 25 H 0.97000 * 120.00423 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99810 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.00113 * 179.77269 * 12 11 10 28 28 H 0.96999 * 119.99461 * 215.83625 * 14 13 12 29 29 H 1.08002 * 120.86542 * 0.02562 * 18 17 15 30 30 H 1.08001 * 120.41999 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.03783 * 180.02562 * 21 20 19 32 32 H 1.07994 * 120.00546 * 180.02562 * 23 13 12 33 33 H 1.08007 * 119.99831 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4403 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0699 -3.5042 0.1120 11 6 1.4548 -4.7440 -0.0087 12 6 2.2009 -5.8988 0.1092 13 6 3.5692 -5.8214 0.3384 14 7 4.3264 -6.9918 0.4531 15 6 4.0236 -8.0670 -0.3009 16 8 3.0419 -8.0500 -1.0167 17 6 4.8890 -9.2718 -0.2568 18 6 4.5859 -10.3918 -1.0324 19 6 5.4271 -11.4923 -0.9541 20 7 6.4784 -11.4437 -0.1538 21 6 6.7360 -10.3691 0.5660 22 7 5.9699 -9.3004 0.5193 23 6 4.1852 -4.5812 0.4539 24 6 3.4378 -3.4267 0.3415 25 1 -0.4851 0.8400 -0.0004 26 1 0.3920 -4.8040 -0.1909 27 1 1.7221 -6.8627 0.0190 28 1 5.0695 -7.0296 1.0755 29 1 3.7192 -10.4015 -1.6767 30 1 5.2257 -12.3773 -1.5394 31 1 7.6039 -10.3643 1.2087 32 1 5.2487 -4.5209 0.6316 33 1 3.9165 -2.4627 0.4308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397046332.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = 25.136683 kcal Electronic energy + Delta-G solvation = -20425.610393 eV Core-core repulsion = 17031.938533 eV Total energy + Delta-G solvation = -3393.671860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53270 -39.96868 -38.66648 -36.58515 -34.53055 -33.75142 -32.45943 -32.20792 -30.26575 -28.27750 -25.88297 -25.20118 -24.69863 -22.40708 -21.90680 -20.57016 -18.75749 -18.10617 -17.86292 -17.18586 -16.35464 -15.82451 -15.78342 -15.65098 -14.65017 -14.60305 -14.41399 -14.09241 -14.06392 -13.62194 -13.48486 -12.85862 -12.58906 -11.92123 -11.63932 -11.57573 -11.37354 -11.20044 -11.02725 -10.84882 -10.51055 -10.31389 -10.14016 -9.71094 -9.61786 -9.35069 -8.74974 -8.25665 -7.00231 -6.48242 -4.05972 0.13309 0.52057 2.04760 2.16458 2.69266 2.93078 3.11892 3.12156 3.16867 3.51554 3.60184 3.72534 3.94237 4.27429 4.49184 4.54887 4.64485 5.07369 5.13569 5.24640 5.26751 5.52888 5.73775 5.84933 6.07029 6.15865 6.20519 6.40516 6.75737 6.78771 6.91506 7.08352 7.17477 7.34945 7.49137 7.63930 7.71069 7.96061 8.14956 8.96987 9.66584 10.69519 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.048309 B = 0.002882 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.463990 B = 9711.659295 C =10134.834390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.150 3.850 11 C -0.180 4.180 12 C -0.064 4.064 13 C 0.025 3.975 14 N -0.631 5.631 15 C 0.557 3.443 16 O -0.511 6.511 17 C 0.139 3.861 18 C -0.170 4.170 19 C 0.150 3.850 20 N -0.510 5.510 21 C 0.293 3.707 22 N -0.498 5.498 23 C -0.082 4.082 24 C -0.220 4.220 25 H 0.271 0.729 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.413 0.587 29 H 0.163 0.837 30 H 0.177 0.823 31 H 0.203 0.797 32 H 0.113 0.887 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.815 -17.936 0.790 21.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.095 3.905 11 C -0.200 4.200 12 C -0.084 4.084 13 C -0.068 4.068 14 N -0.275 5.275 15 C 0.341 3.659 16 O -0.386 6.386 17 C -0.009 4.009 18 C -0.192 4.192 19 C -0.017 4.017 20 N -0.224 5.224 21 C 0.005 3.995 22 N -0.215 5.215 23 C -0.102 4.102 24 C -0.240 4.240 25 H 0.081 0.919 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.249 0.751 29 H 0.180 0.820 30 H 0.194 0.806 31 H 0.219 0.781 32 H 0.131 0.869 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.461 -17.647 0.837 21.059 hybrid contribution 0.301 0.755 -0.198 0.837 sum 11.763 -16.892 0.638 20.594 Atomic orbital electron populations 1.70042 1.05984 1.27779 1.45677 1.25306 0.95853 0.98892 0.96479 0.85702 0.78902 0.80019 0.78755 1.19849 1.20235 1.19165 1.21326 0.91807 0.80837 1.52827 0.89017 1.84000 1.34220 1.11454 1.77998 1.19453 0.90379 0.88049 0.92570 1.20135 1.00152 0.89513 1.10164 1.20722 0.91544 0.98132 0.98031 1.17253 0.90776 0.84308 1.14419 1.42973 1.33470 1.11189 1.39852 1.17811 0.84725 0.82466 0.80855 1.90816 1.26338 1.81088 1.40346 1.21723 0.92152 0.94665 0.92386 1.23035 1.02409 0.93696 1.00104 1.23376 0.88132 0.97564 0.92658 1.68372 1.18842 1.28455 1.06774 1.25012 0.97154 0.83292 0.94012 1.68374 1.04442 1.29314 1.19353 1.20505 0.98457 0.90663 1.00618 1.20990 0.94184 0.98379 1.10420 0.91934 0.85983 0.85357 0.75054 0.81970 0.80573 0.78065 0.86941 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.79 9.44 30.88 0.29 -10.50 16 8 H 0.09 2.32 5.29 -52.49 -0.28 2.04 16 9 O -0.17 -4.91 9.75 0.03 0.00 -4.91 16 10 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 11 C -0.18 -3.90 9.98 -39.42 -0.39 -4.29 16 12 C -0.06 -1.25 8.68 -39.41 -0.34 -1.60 16 13 C 0.02 0.44 6.29 -83.66 -0.53 -0.09 16 14 N -0.63 -9.17 5.32 -10.52 -0.06 -9.22 16 15 C 0.56 8.14 7.67 -12.08 -0.09 8.05 16 16 O -0.51 -8.87 13.90 5.36 0.07 -8.80 16 17 C 0.14 1.61 6.79 -82.64 -0.56 1.05 16 18 C -0.17 -1.57 9.72 -38.90 -0.38 -1.95 16 19 C 0.15 1.12 11.31 -17.20 -0.19 0.92 16 20 N -0.51 -4.47 10.42 -14.60 -0.15 -4.63 16 21 C 0.29 2.48 12.27 -92.27 -1.13 1.34 16 22 N -0.50 -5.18 9.71 -11.14 -0.11 -5.29 16 23 C -0.08 -1.48 9.96 -39.41 -0.39 -1.87 16 24 C -0.22 -4.67 9.13 -39.42 -0.36 -5.03 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 27 H 0.13 2.40 6.27 -52.49 -0.33 2.07 16 28 H 0.41 4.97 8.22 -40.82 -0.34 4.64 16 29 H 0.16 1.34 7.74 -52.49 -0.41 0.94 16 30 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.13 2.77 5.71 -52.48 -0.30 2.47 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -32.77 300.79 -6.88 -39.66 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -2.47 Total: 7.36 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -4.44 Total: -9.65 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.44 Total: -43.40 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.71 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.77 -6.88 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397046332.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.796 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds