Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.50701 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99890 * 270.01677 * 4 3 2 6 6 C 1.38220 * 120.00051 * 180.02562 * 5 4 3 7 7 C 1.38255 * 119.99697 * 359.95697 * 6 5 4 8 8 C 1.38217 * 120.00132 * 0.07194 * 7 6 5 9 9 S 1.76199 * 119.99635 * 179.97438 * 8 7 6 10 10 O 1.42098 * 106.40706 * 23.48889 * 9 8 7 11 11 O 1.42109 * 106.40127 * 156.41361 * 9 8 7 12 12 N 1.65600 * 107.21686 * 269.94654 * 9 8 7 13 13 C 1.46508 * 119.99578 * 65.00548 * 12 9 8 14 14 C 1.50701 * 109.46917 * 164.99945 * 13 12 9 15 15 H 1.08007 * 120.00194 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00128 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99652 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00317 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46783 * 60.00128 * 18 16 14 20 20 H 1.48498 * 109.47405 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47424 * 300.00246 * 18 16 14 22 22 C 1.38215 * 119.99815 * 89.99840 * 4 3 2 23 23 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47232 * 300.00065 * 1 2 3 25 25 H 1.09002 * 109.47070 * 60.00293 * 1 2 3 26 26 H 1.08990 * 109.47298 * 59.99415 * 3 2 1 27 27 H 1.09006 * 109.47065 * 299.99406 * 3 2 1 28 28 H 1.08002 * 120.00348 * 359.97438 * 5 4 3 29 29 H 1.07999 * 120.00153 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.99804 * 179.97438 * 7 6 5 31 31 H 0.96997 * 120.00670 * 245.00427 * 12 9 8 32 32 H 1.09000 * 109.46980 * 284.99631 * 13 12 9 33 33 H 1.08994 * 109.47042 * 44.99882 * 13 12 9 34 34 H 0.97006 * 119.99883 * 179.97438 * 17 16 14 35 35 H 1.07995 * 120.00164 * 359.72517 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1982 6 6 5.5790 1.0231 1.1989 7 6 6.2686 0.9683 0.0018 8 6 5.5802 1.0236 -1.1955 9 16 6.4592 0.9544 -2.7210 10 8 7.6953 0.3109 -2.4431 11 8 5.5379 0.4809 -3.6938 12 7 6.8279 2.5121 -3.1453 13 6 7.7405 3.3012 -2.3142 14 6 8.1979 4.5142 -3.0826 15 1 7.8445 4.6805 -4.0896 16 6 9.0675 5.4117 -2.5003 17 7 9.4974 5.2095 -1.2739 18 14 9.6350 6.9149 -3.4530 19 1 8.4575 7.7424 -3.8194 20 1 10.5590 7.7155 -2.6102 21 1 10.3391 6.4823 -4.6868 22 6 4.2019 1.1316 -1.1961 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8898 27 1 1.6887 1.8464 -0.8901 28 1 3.6624 1.1747 2.1334 29 1 6.1170 0.9808 2.1344 30 1 7.3453 0.8838 0.0023 31 1 6.4397 2.9020 -3.9441 32 1 7.2243 3.6185 -1.4081 33 1 8.6049 2.6937 -2.0461 34 1 10.1096 5.8408 -0.8643 35 1 3.6636 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487337275.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = -99.081743 kcal Electronic energy + Delta-G solvation = -20099.556313 eV Core-core repulsion = 16803.649138 eV Total energy + Delta-G solvation = -3295.907175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46509 -37.67354 -36.70053 -35.32046 -34.63027 -32.20536 -32.14025 -31.15358 -27.47806 -26.74810 -25.49007 -23.18917 -22.50929 -21.73859 -18.92278 -17.61377 -17.29654 -16.59581 -16.27790 -16.02436 -15.79903 -15.43491 -15.22707 -14.84627 -14.40364 -13.94985 -13.48005 -12.95573 -12.79373 -12.58846 -12.50665 -12.14085 -12.08622 -11.80264 -11.69576 -11.57260 -11.49017 -11.11794 -10.94088 -10.78654 -10.46356 -10.13032 -9.92700 -9.46673 -9.27835 -8.90866 -8.88818 -8.24310 -6.19241 -4.23892 0.82538 1.09417 1.28988 3.25987 3.28157 3.30605 3.33160 3.74405 3.92307 4.29017 4.33849 4.59157 4.71027 4.95534 4.99440 5.03832 5.09420 5.14576 5.17875 5.22338 5.33343 5.41798 5.57655 5.80231 5.96012 6.20823 6.29894 6.39709 6.43172 6.85761 6.91786 7.26408 7.32535 7.78310 7.79392 8.16174 8.79941 9.41053 10.91110 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.004373 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.778903 B = 6401.999699 C = 6728.045961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.122 4.122 5 C -0.049 4.049 6 C -0.143 4.143 7 C -0.005 4.005 8 C -0.670 4.670 9 S 2.690 3.310 10 O -0.962 6.962 11 O -0.979 6.979 12 N -1.103 6.103 13 C 0.246 3.754 14 C -0.530 4.530 15 H 0.066 0.934 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.001 3.999 23 H 0.086 0.914 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.144 0.856 31 H 0.411 0.589 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.394 -6.579 5.327 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.122 4.122 5 C -0.068 4.068 6 C -0.162 4.162 7 C -0.024 4.024 8 C -0.755 4.755 9 S 2.778 3.222 10 O -0.951 6.951 11 O -0.970 6.970 12 N -0.865 5.865 13 C 0.123 3.877 14 C -0.570 4.570 15 H 0.084 0.916 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.018 4.018 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.245 0.755 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.873 -7.498 5.212 16.609 hybrid contribution -0.363 1.677 0.006 1.716 sum -14.236 -5.822 5.218 16.242 Atomic orbital electron populations 1.22760 0.81014 1.02845 1.00023 1.87988 1.19592 1.27510 1.95415 1.21336 0.89531 0.85074 1.01237 1.19601 0.94146 1.04797 0.93697 1.21273 0.94478 0.93594 0.97417 1.21275 0.94223 1.02173 0.98509 1.21092 1.00712 0.89515 0.91076 1.31222 1.06107 1.16912 1.21284 1.01861 0.73543 0.73497 0.73261 1.93564 1.42405 1.73786 1.85390 1.93527 1.65206 1.79845 1.58374 1.55450 1.60458 1.33190 1.37422 1.19095 0.87615 0.91123 0.89914 1.21161 1.28320 1.06622 1.00912 0.91628 1.24966 0.95777 0.98349 0.95062 1.69927 1.32689 1.37038 1.13193 0.86467 0.78620 0.82049 0.79748 1.20107 1.21115 1.19991 1.20757 0.92074 0.90529 0.98462 0.89559 0.94087 0.93890 0.92205 0.91988 0.85493 0.84869 0.83788 0.75492 0.96017 0.94293 0.92398 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.64 10.69 -35.23 -0.38 -5.02 16 3 C 0.10 1.15 6.06 36.01 0.22 1.37 16 4 C -0.12 -1.66 5.51 -104.62 -0.58 -2.24 16 5 C -0.05 -0.63 9.70 -39.58 -0.38 -1.01 16 6 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 7 C 0.00 -0.08 9.52 -39.58 -0.38 -0.45 16 8 C -0.67 -11.46 5.95 -39.58 -0.24 -11.70 16 9 S 2.69 51.13 5.74 -107.50 -0.62 50.52 16 10 O -0.96 -20.90 16.75 -57.17 -0.96 -21.86 16 11 O -0.98 -19.36 17.28 -57.17 -0.99 -20.34 16 12 N -1.10 -22.32 5.99 -11.65 -0.07 -22.39 16 13 C 0.25 6.02 5.98 -5.19 -0.03 5.99 16 14 C -0.53 -14.10 9.27 -34.44 -0.32 -14.42 16 15 H 0.07 1.66 7.65 -52.48 -0.40 1.26 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 18 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.00 0.02 9.18 -39.58 -0.36 -0.35 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.14 2.32 7.62 -52.48 -0.40 1.92 16 31 H 0.41 7.55 8.54 -34.48 -0.29 7.26 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.04 1.03 7.75 -51.93 -0.40 0.63 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 35 H 0.14 1.97 7.61 -52.49 -0.40 1.57 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -33.05 320.61 -8.32 -41.37 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.41 Total: 3.90 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -1.45 Total: -22.23 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.67 Total: -46.77 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.32 Total: -47.22 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 51.13 SS G_CDS: -0.62 Total: 50.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.05 -8.32 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487337275.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.712 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds