Wall clock time and date at job start Tue Mar 31 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00113 * 269.72136 * 4 3 2 6 6 C 1.38231 * 120.00269 * 179.76764 * 5 4 3 7 7 C 1.38239 * 119.99971 * 0.49096 * 6 5 4 8 8 S 1.76199 * 120.00288 * 179.76812 * 7 6 5 9 9 O 1.42098 * 106.40014 * 23.56213 * 8 7 6 10 10 O 1.42104 * 106.40141 * 156.47756 * 8 7 6 11 11 N 1.65602 * 107.21802 * 270.01876 * 8 7 6 12 12 C 1.46503 * 119.99765 * 64.99744 * 11 8 7 13 13 C 1.50695 * 109.47042 * 164.99862 * 12 11 8 14 14 H 1.08007 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00302 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99736 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00407 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47367 * 59.99212 * 17 15 13 19 19 H 1.48500 * 109.47613 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46810 * 299.99873 * 17 15 13 21 21 C 1.38241 * 119.99569 * 359.78766 * 7 6 5 22 22 C 1.38231 * 120.00247 * 359.95756 * 21 7 6 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 26 26 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 27 27 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 28 28 H 1.08008 * 119.99692 * 0.02562 * 5 4 3 29 29 H 1.08004 * 120.00486 * 180.25344 * 6 5 4 30 30 H 0.96990 * 119.99929 * 244.99953 * 11 8 7 31 31 H 1.08993 * 109.47360 * 285.00493 * 12 11 8 32 32 H 1.09007 * 109.46804 * 45.00103 * 12 11 8 33 33 H 0.97002 * 120.00203 * 180.02562 * 16 15 13 34 34 H 1.08001 * 119.99488 * 179.97438 * 21 7 6 35 35 H 1.08001 * 120.00020 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2015 1.1379 1.1981 6 6 5.5791 1.0239 1.1987 7 6 6.2687 0.9686 0.0018 8 16 8.0252 0.8295 0.0026 9 8 8.3816 0.2552 1.2525 10 8 8.3827 0.2547 -1.2469 11 7 8.6388 2.3676 0.0025 12 6 8.4116 3.2469 1.1521 13 6 9.3532 4.4212 1.0801 14 1 10.0514 4.5041 0.2602 15 6 9.3243 5.3893 2.0614 16 7 8.4745 5.2881 3.0600 17 14 10.4910 6.8454 1.9718 18 1 10.2458 7.5996 0.7163 19 1 10.2609 7.7366 3.1371 20 1 11.8935 6.3576 1.9903 21 6 5.5801 1.0230 -1.1956 22 6 4.2020 1.1317 -1.1962 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.6886 1.8464 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 3.6631 1.1848 2.1332 29 1 6.1171 0.9818 2.1343 30 1 9.1485 2.6863 -0.7586 31 1 7.3823 3.6050 1.1379 32 1 8.5909 2.6933 2.0739 33 1 8.4538 5.9693 3.7502 34 1 6.1188 0.9803 -2.1307 35 1 3.6641 1.1738 -2.1318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487394572.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:32 Heat of formation + Delta-G solvation = -123.528258 kcal Electronic energy + Delta-G solvation = -19971.501803 eV Core-core repulsion = 16674.534548 eV Total energy + Delta-G solvation = -3296.967255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53361 -38.54662 -38.31542 -36.94911 -36.48429 -34.13616 -33.34842 -32.11513 -28.73645 -28.40720 -26.44759 -24.52609 -23.91202 -22.92690 -20.57657 -19.31205 -18.85404 -17.75887 -17.40772 -17.37548 -17.11176 -16.91367 -16.38197 -15.73044 -15.65285 -15.24549 -14.86840 -14.56717 -14.53025 -14.11313 -13.96365 -13.58985 -13.26829 -13.18619 -13.13533 -12.94217 -12.73050 -12.55934 -12.33478 -12.23589 -12.09440 -11.80532 -11.44175 -10.83825 -10.69006 -10.36001 -10.13407 -10.06148 -8.24529 -6.36854 -0.60225 -0.29327 0.27135 1.45594 1.48091 1.55862 2.03500 2.35124 2.44065 2.75525 3.06161 3.10364 3.34278 3.70954 3.78212 3.89447 4.18433 4.26831 4.37818 4.50023 4.55622 4.59222 4.60229 4.66703 4.87953 4.92864 5.03963 5.06734 5.26788 5.30071 5.35789 5.74196 5.78685 5.97401 6.14996 6.31160 6.76990 7.32745 8.86424 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.004411 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.960056 B = 6345.524129 C = 7315.354224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.098 3.902 4 C -0.045 4.045 5 C -0.126 4.126 6 C -0.039 4.039 7 C -0.675 4.675 8 S 2.707 3.293 9 O -0.996 6.996 10 O -0.985 6.985 11 N -1.102 6.102 12 C 0.259 3.741 13 C -0.552 4.552 14 H 0.075 0.925 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.973 3.027 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.270 1.270 21 C -0.032 4.032 22 C -0.122 4.122 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.419 0.581 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.269 0.731 34 H 0.156 0.844 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.389 -5.843 -7.699 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.022 3.978 4 C -0.046 4.046 5 C -0.145 4.145 6 C -0.059 4.059 7 C -0.764 4.764 8 S 2.799 3.201 9 O -0.987 6.987 10 O -0.975 6.975 11 N -0.863 5.863 12 C 0.135 3.865 13 C -0.591 4.591 14 H 0.093 0.907 15 C -0.191 4.191 16 N -0.564 5.564 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.052 4.052 22 C -0.140 4.140 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.150 0.850 30 H 0.255 0.745 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.173 0.827 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.963 -6.763 -7.368 17.997 hybrid contribution 0.075 1.351 0.163 1.363 sum -14.888 -5.411 -7.205 17.402 Atomic orbital electron populations 1.22977 0.78886 1.03957 1.01316 1.87933 1.21872 1.27571 1.95717 1.21509 0.87506 0.85464 1.03306 1.20259 0.95983 0.94965 0.93356 1.21439 0.93459 1.00099 0.99458 1.21093 0.95819 0.92289 0.96654 1.30808 1.26167 1.18853 1.00611 1.01087 0.74198 0.72486 0.72348 1.93514 1.82772 1.76718 1.45661 1.93505 1.83467 1.76472 1.44101 1.55243 1.68738 1.33118 1.29220 1.18675 0.96306 0.88948 0.82621 1.21599 1.20488 1.06894 1.10134 0.90713 1.25887 0.97444 1.01253 0.94525 1.70047 1.37501 1.36288 1.12552 0.85384 0.78841 0.78113 0.77966 1.18883 1.20793 1.19484 1.21192 0.95609 0.91948 0.96424 1.21514 0.93581 0.99730 0.99191 0.88650 0.92877 0.92500 0.89683 0.90511 0.83057 0.84953 0.74545 0.96947 0.97055 0.92227 0.82686 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.25 10.69 -148.98 -1.59 -9.84 16 3 C 0.10 1.74 6.06 71.24 0.43 2.17 16 4 C -0.05 -1.10 5.51 -19.87 -0.11 -1.21 16 5 C -0.13 -3.50 9.70 22.27 0.22 -3.29 16 6 C -0.04 -1.32 9.52 22.27 0.21 -1.11 16 7 C -0.68 -23.18 5.95 22.27 0.13 -23.05 16 8 S 2.71 104.80 5.74 -56.49 -0.32 104.48 16 9 O -1.00 -45.21 16.75 -128.00 -2.14 -47.35 16 10 O -0.99 -38.49 17.28 -128.00 -2.21 -40.71 16 11 N -1.10 -45.46 5.99 -190.79 -1.14 -46.60 16 12 C 0.26 13.10 5.98 85.63 0.51 13.61 16 13 C -0.55 -29.60 9.27 25.60 0.24 -29.37 16 14 H 0.07 3.76 7.65 -2.91 -0.02 3.74 16 15 C 0.01 0.49 5.46 84.65 0.46 0.95 16 16 N -0.93 -52.96 13.29 21.45 0.28 -52.68 16 17 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 21 C -0.03 -0.93 9.52 22.27 0.21 -0.72 16 22 C -0.12 -2.91 9.70 22.27 0.22 -2.70 16 23 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 27 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.13 4.65 7.62 -2.91 -0.02 4.63 16 30 H 0.42 15.49 8.54 -96.76 -0.83 14.66 16 31 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.01 0.64 7.75 -2.38 -0.02 0.62 16 33 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.16 3.86 7.62 -2.91 -0.02 3.84 16 35 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -70.72 320.62 -1.06 -71.78 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.28 Total: 20.04 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 3.77 Total: -43.17 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -0.86 Total: -99.28 kcal Atomic # 8 Polarization: -91.95 SS G_CDS: -5.95 Total: -97.90 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 104.80 SS G_CDS: -0.32 Total: 104.48 kcal Total: -70.72 -1.06 -71.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487394572.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.752 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds