Wall clock time and date at job start Tue Mar 31 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36741 * 120.00385 * 2 1 4 4 H 1.08003 * 119.99772 * 130.40041 * 3 2 1 5 5 C 1.39101 * 119.99627 * 310.40205 * 3 2 1 6 6 N 1.31332 * 119.99842 * 181.91712 * 5 3 2 7 7 Si 1.86800 * 120.00343 * 1.91828 * 5 3 2 8 8 H 1.48497 * 109.47543 * 84.99024 * 7 5 3 9 9 H 1.48501 * 109.46959 * 204.99359 * 7 5 3 10 10 H 1.48501 * 109.47033 * 324.98581 * 7 5 3 11 11 C 1.34780 * 120.00241 * 179.72335 * 2 1 3 12 12 O 1.21767 * 120.00519 * 179.97438 * 11 2 1 13 13 C 1.46155 * 119.99271 * 0.02562 * 11 2 1 14 14 C 1.35056 * 119.99590 * 171.97630 * 13 11 2 15 15 C 1.47053 * 120.00084 * 348.24810 * 14 13 11 16 16 C 1.39919 * 120.12885 * 314.37571 * 15 14 13 17 17 C 1.38016 * 119.86815 * 179.74504 * 16 15 14 18 18 F 1.35097 * 119.93730 * 180.27312 * 17 16 15 19 19 C 1.38833 * 120.12749 * 0.53315 * 17 16 15 20 20 F 1.35101 * 119.86880 * 179.76554 * 19 17 16 21 21 C 1.38830 * 120.25784 * 359.74062 * 19 17 16 22 22 F 1.35103 * 119.93124 * 180.02562 * 21 19 17 23 23 C 1.38007 * 120.13396 * 359.97438 * 21 19 17 24 24 H 1.08996 * 109.47123 * 86.84238 * 1 2 3 25 25 H 1.08993 * 109.47238 * 206.84728 * 1 2 3 26 26 H 1.09001 * 109.47285 * 326.84402 * 1 2 3 27 27 H 0.97007 * 120.00236 * 180.02562 * 6 5 3 28 28 H 1.07993 * 120.00198 * 351.97333 * 13 11 2 29 29 H 1.07997 * 120.00217 * 168.25551 * 14 13 11 30 30 H 1.07999 * 120.06296 * 0.02562 * 16 15 14 31 31 H 1.08004 * 120.06632 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1487 1.1842 0.0000 4 1 2.9437 1.3486 0.7123 5 6 1.8203 2.1769 -0.9174 6 7 2.5016 3.2993 -0.9423 7 14 0.4101 1.9135 -2.1139 8 1 -0.8695 2.2912 -1.4619 9 1 0.6194 2.7560 -3.3187 10 1 0.3596 0.4838 -2.5124 11 6 2.1389 -1.1672 0.0056 12 8 3.3565 -1.1672 0.0052 13 6 1.4080 -2.4328 0.0112 14 6 2.0734 -3.5975 -0.1465 15 6 3.4789 -3.5886 -0.5787 16 6 3.8819 -2.7719 -1.6409 17 6 5.2035 -2.7638 -2.0387 18 9 5.5951 -1.9716 -3.0606 19 6 6.1301 -3.5722 -1.3943 20 9 7.4215 -3.5637 -1.7911 21 6 5.7350 -4.3889 -0.3435 22 9 6.6424 -5.1726 0.2792 23 6 4.4174 -4.4010 0.0669 24 1 -0.3633 0.0566 -1.0261 25 1 -0.3633 -0.9168 0.4641 26 1 -0.3634 0.8603 0.5620 27 1 2.2724 3.9918 -1.5818 28 1 0.3359 -2.4368 0.1414 29 1 1.5732 -4.5354 0.0448 30 1 3.1611 -2.1456 -2.1455 31 1 4.1113 -5.0365 0.8848 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492560460.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:43 Heat of formation + Delta-G solvation = -115.731415 kcal Electronic energy + Delta-G solvation = -22241.436393 eV Core-core repulsion = 18267.506543 eV Total energy + Delta-G solvation = -3973.929851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.82494 -50.22174 -49.52198 -40.95889 -39.51639 -36.73468 -34.58722 -34.10032 -31.61275 -30.60602 -28.23163 -27.18179 -24.91454 -24.29835 -22.66830 -20.17816 -19.27432 -19.05680 -18.90464 -18.43263 -17.98432 -17.78725 -17.14720 -16.96833 -16.53068 -16.21163 -16.02870 -15.82424 -15.60892 -15.46456 -15.02655 -14.81259 -14.25454 -13.97729 -13.93757 -13.65472 -13.42499 -13.02677 -12.73600 -12.72353 -12.57749 -12.25330 -11.64904 -11.05817 -10.77369 -10.47462 -9.95109 -9.45250 -9.24877 -8.47548 -6.30488 -0.62594 -0.16347 0.59263 1.24109 1.32823 1.42521 2.14519 2.19672 2.41353 2.52883 2.83603 3.00677 3.07766 3.22973 3.42023 3.44589 3.94406 4.06235 4.26464 4.45497 4.51448 4.58354 4.67136 4.72963 4.80319 4.90400 4.97290 5.25123 5.46092 5.58163 5.64750 6.05550 6.61872 6.95087 7.28014 7.89597 8.68097 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.005570 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.044947 B = 5026.135056 C = 5697.168537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.479 5.479 3 C -0.327 4.327 4 H 0.036 0.964 5 C 0.004 3.996 6 N -0.927 5.927 7 Si 0.965 3.035 8 H -0.237 1.237 9 H -0.300 1.300 10 H -0.242 1.242 11 C 0.475 3.525 12 O -0.598 6.598 13 C -0.182 4.182 14 C -0.038 4.038 15 C -0.003 4.003 16 C -0.068 4.068 17 C 0.065 3.935 18 F -0.140 7.140 19 C 0.010 3.990 20 F -0.134 7.134 21 C 0.084 3.916 22 F -0.124 7.124 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.278 0.722 28 H 0.180 0.820 29 H 0.206 0.794 30 H 0.130 0.870 31 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 -18.792 0.091 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.201 5.201 3 C -0.456 4.456 4 H 0.053 0.947 5 C -0.197 4.197 6 N -0.564 5.564 7 Si 0.788 3.212 8 H -0.161 1.161 9 H -0.228 1.228 10 H -0.166 1.166 11 C 0.267 3.733 12 O -0.483 6.483 13 C -0.202 4.202 14 C -0.057 4.057 15 C -0.003 4.003 16 C -0.088 4.088 17 C 0.044 3.956 18 F -0.119 7.119 19 C -0.011 4.011 20 F -0.113 7.113 21 C 0.064 3.936 22 F -0.103 7.103 23 C -0.124 4.124 24 H 0.073 0.927 25 H 0.135 0.865 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.197 0.803 29 H 0.223 0.777 30 H 0.148 0.852 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.649 -18.535 0.009 19.691 hybrid contribution 0.891 1.343 -0.738 1.773 sum -5.758 -17.191 -0.729 18.145 Atomic orbital electron populations 1.22564 0.80452 1.05184 1.02152 1.43682 1.06057 1.04618 1.65702 1.18556 1.17649 0.92422 1.16960 0.94652 1.26515 1.00620 0.94734 0.97865 1.69796 1.41452 1.07714 1.37481 0.85742 0.79024 0.78991 0.77488 1.16074 1.22772 1.16648 1.19474 0.87852 0.85762 0.80196 1.90755 1.15699 1.87668 1.54195 1.23554 1.02086 0.90328 1.04272 1.22664 0.89387 0.99789 0.93908 1.18905 0.96037 0.92796 0.92593 1.21226 0.93049 0.96702 0.97802 1.17405 0.93472 0.94553 0.90126 1.91483 1.91599 1.72176 1.56621 1.17859 0.79181 1.03774 1.00310 1.91470 1.33841 1.95766 1.90204 1.17183 0.88635 0.94197 0.93578 1.91527 1.66339 1.71705 1.80716 1.21496 0.88498 1.00822 1.01537 0.92715 0.86460 0.91256 0.91302 0.80294 0.77716 0.85202 0.78715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 8.21 127.77 1.05 2.25 16 2 N -0.48 -21.41 2.54 -664.07 -1.68 -23.10 16 3 C -0.33 -18.81 9.27 84.13 0.78 -18.03 16 4 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 5 C 0.00 0.21 5.50 84.97 0.47 0.68 16 6 N -0.93 -56.68 13.95 21.69 0.30 -56.37 16 7 Si 0.96 40.76 24.71 68.60 1.69 42.45 16 8 H -0.24 -8.64 7.11 99.48 0.71 -7.94 16 9 H -0.30 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.24 -9.26 6.23 99.48 0.62 -8.64 16 11 C 0.47 19.52 6.63 86.30 0.57 20.10 16 12 O -0.60 -29.95 12.43 -4.56 -0.06 -30.00 16 13 C -0.18 -4.47 9.14 23.59 0.22 -4.26 16 14 C -0.04 -0.72 9.79 23.85 0.23 -0.49 16 15 C 0.00 -0.07 4.42 -20.15 -0.09 -0.16 16 16 C -0.07 -2.37 6.72 22.62 0.15 -2.22 16 17 C 0.06 2.43 7.29 22.36 0.16 2.59 16 18 F -0.14 -5.75 17.17 44.97 0.77 -4.98 16 19 C 0.01 0.34 7.32 22.55 0.17 0.50 16 20 F -0.13 -4.87 17.08 44.97 0.77 -4.11 16 21 C 0.08 2.44 7.29 22.36 0.16 2.61 16 22 F -0.12 -3.47 17.17 44.97 0.77 -2.70 16 23 C -0.11 -2.44 9.77 22.62 0.22 -2.22 16 24 H 0.05 1.66 4.27 -2.39 -0.01 1.65 16 25 H 0.12 2.40 5.83 -2.39 -0.01 2.38 16 26 H 0.07 2.25 7.85 -2.39 -0.02 2.23 16 27 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 28 H 0.18 2.70 6.07 -2.91 -0.02 2.68 16 29 H 0.21 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.13 4.81 7.26 -2.91 -0.02 4.79 16 31 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -79.17 280.60 7.77 -71.40 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.11 Total: 6.04 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 4.09 Total: 1.36 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.38 Total: -79.47 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.06 Total: -30.00 kcal Atomic # 9 Polarization: -14.09 SS G_CDS: 2.31 Total: -11.78 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.69 Total: 42.45 kcal Total: -79.17 7.77 -71.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492560460.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.329 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds