Wall clock time and date at job start Tue Mar 31 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 110.53983 * 2 1 4 4 O 1.42098 * 110.54282 * 223.24942 * 2 1 3 5 5 C 1.76203 * 104.44957 * 111.62525 * 2 1 3 6 6 C 1.34505 * 125.78965 * 90.34448 * 5 2 1 7 7 C 1.41384 * 106.84120 * 180.11822 * 6 5 2 8 8 C 1.50699 * 126.57888 * 179.83706 * 7 6 5 9 9 N 1.46502 * 109.46964 * 269.70506 * 8 7 6 10 10 C 1.36938 * 119.99783 * 90.00374 * 9 8 7 11 11 H 1.07997 * 119.99966 * 214.82678 * 10 9 8 12 12 C 1.38810 * 119.99958 * 34.82315 * 10 9 8 13 13 N 1.31618 * 119.99897 * 21.99091 * 12 10 9 14 14 Si 1.86804 * 120.00019 * 201.98523 * 12 10 9 15 15 H 1.48502 * 109.47027 * 270.00443 * 14 12 10 16 16 H 1.48497 * 109.47006 * 30.00574 * 14 12 10 17 17 H 1.48500 * 109.46695 * 150.00536 * 14 12 10 18 18 C 1.46494 * 120.00281 * 270.00335 * 9 8 7 19 19 C 1.53004 * 117.50070 * 192.44445 * 18 9 8 20 20 C 1.52995 * 117.50069 * 123.78333 * 18 9 8 21 21 C 1.34512 * 106.84209 * 359.57021 * 7 6 5 22 22 O 1.34306 * 108.41922 * 0.26103 * 21 7 6 23 23 H 1.09005 * 109.47447 * 308.37525 * 1 2 3 24 24 H 1.09002 * 109.47218 * 68.37607 * 1 2 3 25 25 H 1.08999 * 109.47273 * 188.37722 * 1 2 3 26 26 H 1.08004 * 126.58391 * 359.94994 * 6 5 2 27 27 H 1.09007 * 109.47197 * 149.71136 * 8 7 6 28 28 H 1.09000 * 109.47655 * 29.71033 * 8 7 6 29 29 H 0.97006 * 119.99945 * 180.46831 * 13 12 10 30 30 H 1.09003 * 115.55265 * 338.11398 * 18 9 8 31 31 H 1.08997 * 117.49630 * 359.97438 * 19 18 9 32 32 H 1.09000 * 117.49652 * 145.02158 * 19 18 9 33 33 H 1.09003 * 117.50087 * 214.97992 * 20 18 9 34 34 H 1.09002 * 117.49889 * 359.97438 * 20 18 9 35 35 H 1.07999 * 125.79504 * 180.23221 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4563 -1.9232 1.8907 7 6 2.7846 -1.9742 3.2649 8 6 3.0952 -3.2104 4.0688 9 7 1.8584 -3.7385 4.6499 10 6 1.1130 -4.6547 3.9569 11 1 0.0358 -4.6423 4.0323 12 6 1.7421 -5.5992 3.1576 13 7 3.0013 -5.9132 3.3768 14 14 0.8014 -6.4247 1.7708 15 1 0.1468 -7.6562 2.2811 16 1 -0.2322 -5.4938 1.2510 17 1 1.7418 -6.7805 0.6780 18 6 1.4191 -3.2866 5.9723 19 6 0.2960 -4.0736 6.6508 20 6 0.0190 -2.6795 6.0823 21 6 2.7723 -0.7069 3.7158 22 8 2.4501 0.1037 2.6946 23 1 -0.3634 0.6380 0.8057 24 1 -0.3634 0.3787 -0.9554 25 1 -0.3634 -1.0167 0.1497 26 1 2.3800 -2.7628 1.2157 27 1 3.7933 -2.9587 4.8673 28 1 3.5421 -3.9633 3.4195 29 1 3.4429 -6.5683 2.8139 30 1 2.1992 -2.8713 6.6104 31 1 -0.1163 -4.9273 6.1130 32 1 0.3371 -4.1757 7.7353 33 1 -0.1221 -1.8652 6.7930 34 1 -0.5751 -2.6160 5.1707 35 1 2.9849 -0.3943 4.7275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528366305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:39 Heat of formation + Delta-G solvation = 3.359291 kcal Electronic energy + Delta-G solvation = -20890.177597 eV Core-core repulsion = 17598.712599 eV Total energy + Delta-G solvation = -3291.464999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10544 -37.19485 -37.07130 -35.96565 -34.16893 -32.55852 -30.70380 -29.70174 -29.19872 -25.84559 -23.72909 -22.01655 -21.46995 -20.60789 -19.92703 -18.67006 -17.68970 -16.48484 -16.23479 -15.79318 -15.71185 -15.48052 -15.34031 -14.45700 -13.97088 -13.46824 -13.29879 -13.14081 -12.96778 -12.58729 -12.30802 -12.11693 -12.00720 -11.90126 -11.45465 -11.20448 -11.04335 -10.88360 -10.71621 -10.62698 -10.34012 -10.10601 -9.76799 -9.56601 -9.26259 -8.56559 -8.40740 -6.71040 -5.95127 -3.51344 0.00194 1.62357 2.69409 2.97229 3.25983 3.35660 3.35940 3.53367 3.87075 4.31332 4.33770 4.68418 4.83471 4.98164 5.18287 5.24395 5.40415 5.45333 5.56516 5.77999 5.85905 5.97418 6.10840 6.28946 6.31448 6.37894 6.50299 6.67008 6.84291 6.93038 7.06364 7.29450 7.50053 7.67499 8.33625 9.00210 9.63563 10.18125 11.04241 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.006637 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.843547 B = 4217.538060 C = 5120.790365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.538 3.462 3 O -0.934 6.934 4 O -0.924 6.924 5 C -0.596 4.596 6 C -0.054 4.054 7 C -0.176 4.176 8 C 0.197 3.803 9 N -0.543 5.543 10 C -0.260 4.260 11 H 0.064 0.936 12 C 0.014 3.986 13 N -0.883 5.883 14 Si 0.892 3.108 15 H -0.283 1.283 16 H -0.277 1.277 17 H -0.284 1.284 18 C 0.125 3.875 19 C -0.194 4.194 20 C -0.228 4.228 21 C -0.007 4.007 22 O -0.135 6.135 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.159 0.841 27 H 0.041 0.959 28 H 0.115 0.885 29 H 0.258 0.742 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 10.139 -1.945 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.713 3.287 3 O -0.931 6.931 4 O -0.921 6.921 5 C -0.727 4.727 6 C -0.076 4.076 7 C -0.180 4.180 8 C 0.070 3.930 9 N -0.258 5.258 10 C -0.389 4.389 11 H 0.081 0.919 12 C -0.187 4.187 13 N -0.524 5.524 14 Si 0.720 3.280 15 H -0.210 1.210 16 H -0.202 1.202 17 H -0.210 1.210 18 C 0.016 3.984 19 C -0.233 4.233 20 C -0.268 4.268 21 C -0.078 4.078 22 O -0.030 6.030 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.176 0.824 27 H 0.059 0.941 28 H 0.132 0.868 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.061 10.521 -2.650 11.273 hybrid contribution -1.118 -1.067 0.157 1.553 sum -4.178 9.454 -2.493 10.633 Atomic orbital electron populations 1.30211 1.25201 1.12636 1.11728 1.04451 0.77887 0.74144 0.72239 1.93563 1.77514 1.36405 1.85631 1.93631 1.77894 1.62305 1.58313 1.34763 1.27057 1.00918 1.09952 1.21942 0.93829 0.94929 0.96866 1.22129 1.04049 0.97527 0.94336 1.19599 0.87980 0.90116 0.95267 1.43368 1.25358 1.44839 1.12235 1.18927 0.89979 1.07099 1.22915 0.91857 1.25104 0.96370 0.96137 1.01057 1.69942 1.11712 1.32541 1.38228 0.86476 0.79539 0.79636 0.82329 1.21005 1.20188 1.20997 1.21131 0.88670 0.99817 0.88791 1.23076 1.06593 0.95434 0.98172 1.23377 1.05677 0.95585 1.02207 1.24398 1.01514 0.89549 0.92383 1.84088 1.67867 1.35611 1.15463 0.84741 0.84902 0.84552 0.82363 0.94101 0.86771 0.93152 0.89430 0.88297 0.90690 0.90931 0.89848 0.77967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.75 10.80 101.05 1.09 -4.66 16 2 S 2.54 33.92 5.95 -107.50 -0.64 33.28 16 3 O -0.93 -14.82 17.95 -58.28 -1.05 -15.87 16 4 O -0.92 -15.02 17.70 -57.54 -1.02 -16.04 16 5 C -0.60 -10.01 6.98 29.41 0.21 -9.81 16 6 C -0.05 -1.04 10.51 -39.70 -0.42 -1.46 16 7 C -0.18 -3.45 5.75 -104.74 -0.60 -4.05 16 8 C 0.20 4.29 5.85 -5.19 -0.03 4.26 16 9 N -0.54 -12.52 2.78 -167.02 -0.47 -12.99 16 10 C -0.26 -6.60 8.20 -15.06 -0.12 -6.72 16 11 H 0.06 1.63 7.15 -52.49 -0.38 1.26 16 12 C 0.01 0.36 4.97 -17.43 -0.09 0.27 16 13 N -0.88 -23.83 11.31 55.49 0.63 -23.20 16 14 Si 0.89 20.48 29.61 -169.99 -5.03 15.44 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.13 2.50 6.61 -67.93 -0.45 2.06 16 19 C -0.19 -3.68 9.79 -26.69 -0.26 -3.94 16 20 C -0.23 -4.12 10.13 -26.70 -0.27 -4.39 16 21 C -0.01 -0.11 12.01 29.41 0.35 0.24 16 22 O -0.14 -2.31 10.65 5.68 0.06 -2.25 16 23 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 24 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 26 H 0.16 3.06 8.06 -52.48 -0.42 2.64 16 27 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 28 H 0.12 2.84 5.33 -51.93 -0.28 2.56 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 31 H 0.10 2.09 6.82 -51.93 -0.35 1.74 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.20 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -32.59 317.59 -7.68 -40.27 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.36 Total: 4.78 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: -0.59 Total: -28.20 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.16 Total: -36.19 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -2.00 Total: -34.16 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.44 kcal Atomic # 16 Polarization: 33.92 SS G_CDS: -0.64 Total: 33.28 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.59 -7.68 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528366305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.628 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds