Wall clock time and date at job start Tue Mar 31 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42105 * 110.53983 * 2 1 4 4 O 1.42098 * 110.54282 * 223.24942 * 2 1 3 5 5 C 1.76203 * 104.44957 * 111.62525 * 2 1 3 6 6 C 1.34505 * 125.78965 * 90.34448 * 5 2 1 7 7 C 1.41384 * 106.84120 * 180.11822 * 6 5 2 8 8 C 1.50699 * 126.57888 * 179.83706 * 7 6 5 9 9 N 1.46502 * 109.46964 * 269.70506 * 8 7 6 10 10 C 1.36938 * 119.99783 * 90.00374 * 9 8 7 11 11 H 1.07997 * 119.99966 * 214.82678 * 10 9 8 12 12 C 1.38810 * 119.99958 * 34.82315 * 10 9 8 13 13 N 1.31618 * 119.99897 * 21.99091 * 12 10 9 14 14 Si 1.86804 * 120.00019 * 201.98523 * 12 10 9 15 15 H 1.48502 * 109.47027 * 270.00443 * 14 12 10 16 16 H 1.48497 * 109.47006 * 30.00574 * 14 12 10 17 17 H 1.48500 * 109.46695 * 150.00536 * 14 12 10 18 18 C 1.46494 * 120.00281 * 270.00335 * 9 8 7 19 19 C 1.53004 * 117.50070 * 192.44445 * 18 9 8 20 20 C 1.52995 * 117.50069 * 123.78333 * 18 9 8 21 21 C 1.34512 * 106.84209 * 359.57021 * 7 6 5 22 22 O 1.34306 * 108.41922 * 0.26103 * 21 7 6 23 23 H 1.09005 * 109.47447 * 308.37525 * 1 2 3 24 24 H 1.09002 * 109.47218 * 68.37607 * 1 2 3 25 25 H 1.08999 * 109.47273 * 188.37722 * 1 2 3 26 26 H 1.08004 * 126.58391 * 359.94994 * 6 5 2 27 27 H 1.09007 * 109.47197 * 149.71136 * 8 7 6 28 28 H 1.09000 * 109.47655 * 29.71033 * 8 7 6 29 29 H 0.97006 * 119.99945 * 180.46831 * 13 12 10 30 30 H 1.09003 * 115.55265 * 338.11398 * 18 9 8 31 31 H 1.08997 * 117.49630 * 359.97438 * 19 18 9 32 32 H 1.09000 * 117.49652 * 145.02158 * 19 18 9 33 33 H 1.09003 * 117.50087 * 214.97992 * 20 18 9 34 34 H 1.09002 * 117.49889 * 359.97438 * 20 18 9 35 35 H 1.07999 * 125.79504 * 180.23221 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4563 -1.9232 1.8907 7 6 2.7846 -1.9742 3.2649 8 6 3.0952 -3.2104 4.0688 9 7 1.8584 -3.7385 4.6499 10 6 1.1130 -4.6547 3.9569 11 1 0.0358 -4.6423 4.0323 12 6 1.7421 -5.5992 3.1576 13 7 3.0013 -5.9132 3.3768 14 14 0.8014 -6.4247 1.7708 15 1 0.1468 -7.6562 2.2811 16 1 -0.2322 -5.4938 1.2510 17 1 1.7418 -6.7805 0.6780 18 6 1.4191 -3.2866 5.9723 19 6 0.2960 -4.0736 6.6508 20 6 0.0190 -2.6795 6.0823 21 6 2.7723 -0.7069 3.7158 22 8 2.4501 0.1037 2.6946 23 1 -0.3634 0.6380 0.8057 24 1 -0.3634 0.3787 -0.9554 25 1 -0.3634 -1.0167 0.1497 26 1 2.3800 -2.7628 1.2157 27 1 3.7933 -2.9587 4.8673 28 1 3.5421 -3.9633 3.4195 29 1 3.4429 -6.5683 2.8139 30 1 2.1992 -2.8713 6.6104 31 1 -0.1163 -4.9273 6.1130 32 1 0.3371 -4.1757 7.7353 33 1 -0.1221 -1.8652 6.7930 34 1 -0.5751 -2.6160 5.1707 35 1 2.9849 -0.3943 4.7275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528366305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:38 Heat of formation + Delta-G solvation = -19.323822 kcal Electronic energy + Delta-G solvation = -20891.161211 eV Core-core repulsion = 17598.712599 eV Total energy + Delta-G solvation = -3292.448612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.48818 -38.80049 -38.25840 -37.13314 -35.76173 -34.22811 -32.34871 -30.91155 -30.27463 -27.60443 -25.43886 -23.32612 -22.94587 -22.02511 -21.60126 -19.87402 -19.07844 -18.02620 -17.60413 -17.30188 -16.96408 -16.77956 -16.64527 -16.20108 -15.67242 -14.81301 -14.54859 -14.04694 -14.03012 -14.01463 -13.88908 -13.54641 -13.29799 -13.18501 -13.08287 -12.81428 -12.67472 -12.40427 -12.18073 -12.13312 -12.03088 -11.83796 -11.43792 -11.04183 -10.75731 -10.41831 -9.80737 -8.55134 -7.86207 -5.46154 -1.01892 0.28064 1.38895 1.45121 1.50134 1.52139 1.58148 2.27110 2.45990 2.85649 3.13411 3.31364 3.45499 3.59777 3.93085 4.06539 4.11091 4.19933 4.30109 4.36023 4.48278 4.56223 4.75663 4.90816 4.93084 4.95635 5.04236 5.13527 5.32968 5.40436 5.54763 5.63370 5.72449 5.93724 6.42167 7.10979 7.82001 8.30612 9.07780 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.006637 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.843547 B = 4217.538060 C = 5120.790365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.616 4.616 2 S 2.541 3.459 3 O -0.960 6.960 4 O -0.961 6.961 5 C -0.586 4.586 6 C -0.089 4.089 7 C -0.205 4.205 8 C 0.201 3.799 9 N -0.558 5.558 10 C -0.254 4.254 11 H 0.055 0.945 12 C -0.031 4.031 13 N -0.912 5.912 14 Si 0.938 3.062 15 H -0.284 1.284 16 H -0.268 1.268 17 H -0.291 1.291 18 C 0.102 3.898 19 C -0.197 4.197 20 C -0.203 4.203 21 C 0.011 3.989 22 O -0.133 6.133 23 H 0.157 0.843 24 H 0.171 0.829 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.253 0.747 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 12.268 -1.282 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.771 4.771 2 S 2.718 3.282 3 O -0.958 6.958 4 O -0.959 6.959 5 C -0.713 4.713 6 C -0.110 4.110 7 C -0.209 4.209 8 C 0.075 3.925 9 N -0.275 5.275 10 C -0.384 4.384 11 H 0.072 0.928 12 C -0.228 4.228 13 N -0.555 5.555 14 Si 0.766 3.234 15 H -0.210 1.210 16 H -0.192 1.192 17 H -0.217 1.217 18 C -0.006 4.006 19 C -0.235 4.235 20 C -0.243 4.243 21 C -0.060 4.060 22 O -0.028 6.028 23 H 0.176 0.824 24 H 0.189 0.811 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.897 12.658 -1.942 13.710 hybrid contribution -0.608 -1.646 -0.036 1.755 sum -5.505 11.012 -1.977 12.469 Atomic orbital electron populations 1.30006 1.18010 1.14167 1.14938 1.04532 0.80436 0.72697 0.70560 1.93525 1.79897 1.37007 1.85323 1.93581 1.80420 1.63003 1.58846 1.35340 1.25407 0.99885 1.10691 1.21927 0.96238 0.95808 0.97064 1.21923 1.06487 0.97922 0.94584 1.19342 0.87768 0.90175 0.95202 1.43511 1.25377 1.44925 1.13652 1.19000 0.89820 1.06898 1.22727 0.92767 1.25641 0.97042 0.97195 1.02970 1.70058 1.12887 1.33510 1.39075 0.85731 0.78572 0.78907 0.80172 1.21039 1.19229 1.21690 1.21437 0.90093 1.01093 0.87951 1.23081 1.05931 0.95060 0.99451 1.23308 1.03171 0.95928 1.01900 1.24936 0.99291 0.88328 0.93493 1.84108 1.67360 1.35630 1.15660 0.82425 0.81100 0.83670 0.83925 0.92900 0.90333 0.93800 0.87148 0.91195 0.87918 0.87460 0.91713 0.74096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -8.43 10.80 113.37 1.22 -7.20 16 2 S 2.54 64.68 5.95 -56.49 -0.34 64.34 16 3 O -0.96 -29.24 17.95 -126.94 -2.28 -31.51 16 4 O -0.96 -31.33 17.70 -127.65 -2.26 -33.59 16 5 C -0.59 -19.24 6.98 66.97 0.47 -18.78 16 6 C -0.09 -3.49 10.51 22.19 0.23 -3.26 16 7 C -0.21 -8.02 5.75 -19.94 -0.11 -8.14 16 8 C 0.20 8.92 5.85 85.63 0.50 9.42 16 9 N -0.56 -25.80 2.78 -682.34 -1.90 -27.70 16 10 C -0.25 -13.12 8.20 84.03 0.69 -12.43 16 11 H 0.05 2.84 7.15 -2.91 -0.02 2.82 16 12 C -0.03 -1.65 4.97 84.86 0.42 -1.22 16 13 N -0.91 -51.13 11.31 21.65 0.24 -50.88 16 14 Si 0.94 43.04 29.61 68.60 2.03 45.08 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 18 C 0.10 3.91 6.61 44.99 0.30 4.21 16 19 C -0.20 -7.13 9.79 30.62 0.30 -6.83 16 20 C -0.20 -6.78 10.13 30.62 0.31 -6.47 16 21 C 0.01 0.35 12.01 66.97 0.80 1.15 16 22 O -0.13 -4.31 10.65 -2.58 -0.03 -4.34 16 23 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.14 5.88 8.06 -2.91 -0.02 5.86 16 27 H 0.05 2.12 8.04 -2.38 -0.02 2.11 16 28 H 0.08 4.10 5.33 -2.39 -0.01 4.09 16 29 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 30 H 0.11 3.68 8.10 -2.39 -0.02 3.66 16 31 H 0.07 2.95 6.82 -2.39 -0.02 2.93 16 32 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.24 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -72.88 317.59 1.71 -71.17 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.10 Total: 16.97 kcal Atomic # 6 Polarization: -54.67 SS G_CDS: 5.13 Total: -49.54 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.66 Total: -78.58 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -4.57 Total: -69.44 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 64.68 SS G_CDS: -0.34 Total: 64.34 kcal Total: -72.88 1.71 -71.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528366305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.847 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds