Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.47115 * 2 1 4 4 C 1.35899 * 117.00148 * 179.97438 * 3 2 1 5 5 C 1.38758 * 120.05287 * 0.02562 * 4 3 2 6 6 C 1.38127 * 119.93980 * 179.67517 * 5 4 3 7 7 C 1.38286 * 120.05588 * 0.57610 * 6 5 4 8 8 S 1.76204 * 119.94267 * 179.72059 * 7 6 5 9 9 O 1.42101 * 106.39997 * 156.18601 * 8 7 6 10 10 O 1.42098 * 106.40053 * 23.26403 * 8 7 6 11 11 N 1.65598 * 107.21832 * 269.72710 * 8 7 6 12 12 C 1.36939 * 120.00095 * 65.00007 * 11 8 7 13 13 H 1.07997 * 119.99728 * 359.72429 * 12 11 8 14 14 C 1.38815 * 119.99845 * 180.02562 * 12 11 8 15 15 N 1.31619 * 119.99884 * 359.72042 * 14 12 11 16 16 Si 1.86798 * 119.99660 * 179.72678 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99578 * 16 14 12 18 18 H 1.48508 * 109.46609 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99163 * 16 14 12 20 20 C 1.38241 * 120.11212 * 359.44967 * 7 6 5 21 21 C 1.38169 * 120.05402 * 0.24653 * 20 7 6 22 22 C 1.50699 * 120.02526 * 180.02562 * 21 20 7 23 23 H 1.09000 * 109.47643 * 299.99749 * 1 2 3 24 24 H 1.09000 * 109.47504 * 59.99965 * 1 2 3 25 25 H 1.09001 * 109.47168 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47060 * 239.99822 * 2 1 3 27 27 H 1.09002 * 109.46797 * 120.00234 * 2 1 3 28 28 H 1.07994 * 120.02690 * 0.02562 * 5 4 3 29 29 H 1.08006 * 119.97074 * 180.31247 * 6 5 4 30 30 H 0.97004 * 119.99990 * 245.00397 * 11 8 7 31 31 H 0.97000 * 119.99517 * 180.02562 * 15 14 12 32 32 H 1.08003 * 119.97267 * 180.27589 * 20 7 6 33 33 H 1.09001 * 109.47564 * 90.00033 * 22 21 20 34 34 H 1.09000 * 109.47116 * 210.00289 * 22 21 20 35 35 H 1.09008 * 109.47415 * 330.00046 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 -0.0057 7 6 6.0961 1.8878 0.0001 8 16 7.8430 2.1187 -0.0004 9 8 8.0768 3.4104 -0.5447 10 8 8.4043 0.9324 -0.5452 11 7 8.3295 2.1826 1.5812 12 6 8.1969 1.0807 2.3834 13 1 7.7710 0.1714 1.9857 14 6 8.6043 1.1345 3.7093 15 7 9.1230 2.2428 4.1940 16 14 8.4163 -0.3663 4.8056 17 1 9.1948 -1.4956 4.2366 18 1 8.9229 -0.0521 6.1658 19 1 6.9824 -0.7441 4.8859 20 6 5.2551 2.9850 0.0007 21 6 3.8850 2.8066 0.0006 22 6 2.9688 4.0030 0.0006 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.7885 -0.5728 -0.0003 29 1 6.2280 -0.2461 -0.0108 30 1 8.7083 3.0006 1.9394 31 1 9.4079 2.2802 5.1204 32 1 5.6694 3.9824 0.0007 33 1 2.7479 4.2916 -1.0270 34 1 2.0412 3.7504 0.5144 35 1 3.4544 4.8327 0.5146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532186843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -97.794790 kcal Electronic energy + Delta-G solvation = -20497.400805 eV Core-core repulsion = 17201.549436 eV Total energy + Delta-G solvation = -3295.851369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.14594 -37.43295 -36.09604 -34.72051 -34.57824 -32.83862 -31.71738 -30.91459 -29.69651 -26.63167 -24.49393 -24.17800 -22.06974 -21.25594 -18.37152 -18.13303 -18.02573 -16.77456 -16.24224 -16.10230 -16.04695 -14.62415 -14.40150 -14.22224 -13.84952 -13.79531 -13.50969 -12.95394 -12.87740 -12.78057 -12.56335 -12.00732 -11.96090 -11.76168 -11.71551 -11.27927 -11.08722 -11.04084 -10.90402 -10.87808 -10.66144 -10.57730 -10.31555 -10.00287 -9.85161 -8.64038 -8.28249 -8.10683 -6.43071 -3.88310 1.28903 1.57757 1.65265 3.11212 3.19763 3.23010 3.25420 3.74846 4.10982 4.52275 4.72241 4.73470 4.82938 4.89990 4.97510 5.04988 5.15498 5.25083 5.40585 5.54361 5.55813 5.56832 5.69965 5.78705 5.81756 5.90919 6.07101 6.25721 6.44131 6.50223 6.63479 6.95810 7.04110 7.44013 7.52219 8.69110 8.83648 9.25912 10.73312 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.005866 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.421360 B = 4772.329933 C = 5702.699294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.313 6.313 4 C 0.162 3.838 5 C -0.230 4.230 6 C 0.014 3.986 7 C -0.690 4.690 8 S 2.631 3.369 9 O -1.001 7.001 10 O -0.973 6.973 11 N -0.952 5.952 12 C -0.281 4.281 13 H 0.101 0.899 14 C 0.032 3.968 15 N -0.882 5.882 16 Si 0.921 3.079 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.011 3.989 21 C -0.145 4.145 22 C -0.101 4.101 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.411 0.589 31 H 0.274 0.726 32 H 0.140 0.860 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.200 -2.598 -5.008 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.227 6.227 4 C 0.116 3.884 5 C -0.249 4.249 6 C -0.005 4.005 7 C -0.771 4.771 8 S 2.721 3.279 9 O -0.991 6.991 10 O -0.964 6.964 11 N -0.705 5.705 12 C -0.419 4.419 13 H 0.119 0.881 14 C -0.175 4.175 15 N -0.524 5.524 16 Si 0.747 3.253 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.199 1.199 20 C -0.008 4.008 21 C -0.147 4.147 22 C -0.157 4.157 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.247 0.753 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.927 -2.448 -5.782 15.277 hybrid contribution -0.672 -0.776 1.211 1.587 sum -14.599 -3.225 -4.571 15.634 Atomic orbital electron populations 1.21764 0.92800 1.02757 1.03430 1.22806 0.95743 0.82181 1.01682 1.86039 1.19268 1.29185 1.88217 1.18918 0.81825 0.93884 0.93764 1.21272 0.94633 0.97726 1.11312 1.20702 0.94382 0.96130 0.89257 1.31851 1.30379 0.98602 1.16243 1.05322 0.74833 0.72812 0.74954 1.93422 1.85781 1.40814 1.79051 1.93471 1.76120 1.48587 1.78188 1.51603 1.67095 1.20712 1.31075 1.19197 1.39958 0.89707 0.93037 0.88104 1.25193 0.97309 0.98059 0.96951 1.69681 1.40061 1.26480 1.16157 0.86086 0.78794 0.81271 0.79124 1.19577 1.20736 1.19910 1.20615 0.91302 0.98359 0.90526 1.19305 0.94389 0.92519 1.08443 1.20568 0.98363 0.94791 1.02008 0.91530 0.91607 0.90438 0.91949 0.91812 0.85342 0.84361 0.75325 0.91640 0.84208 0.91687 0.91443 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.52 5.46 37.16 0.20 0.73 16 3 O -0.31 -4.33 9.18 -19.42 -0.18 -4.51 16 4 C 0.16 2.60 6.66 -39.22 -0.26 2.34 16 5 C -0.23 -3.69 9.04 -39.43 -0.36 -4.04 16 6 C 0.01 0.27 9.52 -39.60 -0.38 -0.11 16 7 C -0.69 -13.75 5.89 -39.56 -0.23 -13.99 16 8 S 2.63 58.75 5.70 -107.50 -0.61 58.14 16 9 O -1.00 -23.54 17.28 -57.17 -0.99 -24.53 16 10 O -0.97 -23.66 16.97 -57.17 -0.97 -24.64 16 11 N -0.95 -23.08 5.75 31.50 0.18 -22.90 16 12 C -0.28 -7.12 9.63 -15.06 -0.15 -7.26 16 13 H 0.10 2.42 7.82 -52.49 -0.41 2.01 16 14 C 0.03 0.81 5.50 -17.43 -0.10 0.72 16 15 N -0.88 -23.54 13.06 55.49 0.72 -22.82 16 16 Si 0.92 19.75 29.55 -169.99 -5.02 14.73 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 C 0.01 0.20 9.17 -39.61 -0.36 -0.16 16 21 C -0.15 -2.41 5.89 -104.48 -0.62 -3.02 16 22 C -0.10 -1.33 9.79 36.01 0.35 -0.98 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 27 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 29 H 0.14 2.43 7.61 -52.48 -0.40 2.03 16 30 H 0.41 10.11 8.02 -34.47 -0.28 9.83 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.14 2.40 7.61 -52.48 -0.40 2.00 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.85 7.53 -51.93 -0.39 0.46 16 35 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -31.17 314.83 -7.88 -39.05 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.25 Total: 9.29 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -1.51 Total: -26.56 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.91 Total: -45.72 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -2.14 Total: -53.67 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 58.75 SS G_CDS: -0.61 Total: 58.14 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.17 -7.88 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532186843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.746 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds