Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00038 * 2 1 4 4 C 1.38808 * 120.01763 * 0.02567 * 3 2 1 5 5 C 1.38169 * 120.09271 * 179.97438 * 4 3 2 6 6 C 1.38155 * 120.13084 * 359.69733 * 5 4 3 7 7 C 1.38931 * 120.03024 * 0.55455 * 6 5 4 8 8 N 1.39673 * 120.04829 * 179.74239 * 7 6 5 9 9 C 1.46503 * 119.99794 * 24.72528 * 8 7 6 10 10 C 1.50701 * 109.47075 * 275.00369 * 9 8 7 11 11 H 1.08002 * 119.99803 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99766 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99668 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00468 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47320 * 89.99847 * 14 12 10 16 16 H 1.48497 * 109.47545 * 210.00576 * 14 12 10 17 17 H 1.48504 * 109.46656 * 330.00019 * 14 12 10 18 18 S 1.65599 * 120.00213 * 204.72513 * 8 7 6 19 19 C 1.81395 * 104.44748 * 266.07202 * 18 8 7 20 20 O 1.42105 * 104.27655 * 149.99896 * 18 8 7 21 21 O 1.42101 * 104.27764 * 22.14333 * 18 8 7 22 22 C 1.38574 * 120.01641 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47367 * 59.99551 * 1 2 3 24 24 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46895 * 299.99444 * 1 2 3 26 26 H 1.08008 * 119.95658 * 359.97350 * 4 3 2 27 27 H 1.08007 * 119.93788 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.99123 * 180.27177 * 6 5 4 29 29 H 1.09003 * 109.46931 * 34.99962 * 9 8 7 30 30 H 1.08993 * 109.47392 * 155.00031 * 9 8 7 31 31 H 0.96998 * 119.99772 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47420 * 291.62015 * 19 18 8 33 33 H 1.08998 * 109.47499 * 51.62641 * 19 18 8 34 34 H 1.09005 * 109.46927 * 171.62508 * 19 18 8 35 35 H 1.07998 * 120.06332 * 0.04621 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3752 0.0005 5 6 1.9160 3.6071 0.0011 6 6 3.2954 3.6844 0.0074 7 6 4.0569 2.5224 0.0016 8 7 5.4514 2.6001 0.0025 9 6 6.1184 3.7887 0.5397 10 6 6.2044 4.8442 -0.5325 11 1 5.8028 4.6489 -1.5159 12 6 6.7967 6.0587 -0.2583 13 7 6.8722 6.9796 -1.1943 14 14 7.4921 6.3961 1.4422 15 1 8.9147 5.9729 1.4883 16 1 7.3979 7.8486 1.7363 17 1 6.7161 5.6350 2.4541 18 16 6.3509 1.3487 -0.6036 19 6 6.7379 0.3268 0.8443 20 8 7.5265 1.9718 -1.1028 21 8 5.4588 0.6647 -1.4727 22 6 3.4298 1.2838 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2118 2.3182 0.0005 27 1 1.3256 4.5116 0.0011 28 1 3.7820 4.6485 0.0122 29 1 5.5481 4.1747 1.3846 30 1 7.1227 3.5237 0.8700 31 1 7.2886 7.8342 -1.0013 32 1 7.4223 0.8673 1.4982 33 1 5.8193 0.1016 1.3861 34 1 7.2047 -0.6029 0.5185 35 1 4.0192 0.3788 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553469295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = -62.875825 kcal Electronic energy + Delta-G solvation = -21088.832430 eV Core-core repulsion = 17794.495261 eV Total energy + Delta-G solvation = -3294.337169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89523 -37.91045 -36.75236 -35.52024 -35.05331 -32.55963 -30.56695 -29.37010 -29.06828 -27.64933 -26.75937 -22.70976 -22.43327 -21.05586 -18.93583 -17.76778 -17.11408 -16.95365 -16.08132 -15.85573 -15.57553 -15.49059 -15.29422 -14.62447 -14.08443 -13.44799 -13.30178 -13.20533 -12.99784 -12.75963 -12.64174 -12.32417 -12.09329 -11.77765 -11.62994 -11.45434 -11.40601 -11.21851 -10.82198 -10.74091 -10.66947 -10.50529 -10.20102 -9.68342 -9.27509 -8.66628 -8.02582 -7.45055 -6.14492 -4.15029 0.53939 1.75279 1.89968 2.91178 3.22138 3.26154 3.30433 3.45988 4.09572 4.31146 4.34059 4.45678 4.85166 5.01508 5.09330 5.15534 5.17135 5.23762 5.26235 5.45692 5.47148 5.69096 5.75634 5.87310 5.95053 6.30831 6.51642 6.61142 6.64946 6.80323 7.04858 7.15725 7.41058 7.45290 7.70933 8.39768 8.92468 9.42218 10.98420 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.006785 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.550377 B = 4126.002790 C = 5150.963779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.147 3.853 4 C -0.243 4.243 5 C -0.060 4.060 6 C -0.165 4.165 7 C 0.229 3.771 8 N -0.919 5.919 9 C 0.216 3.784 10 C -0.531 4.531 11 H 0.083 0.917 12 C 0.077 3.923 13 N -0.888 5.888 14 Si 0.867 3.133 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.264 1.264 18 S 2.595 3.405 19 C -0.682 4.682 20 O -0.924 6.924 21 O -0.951 6.951 22 C -0.202 4.202 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.154 0.846 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 -12.058 7.135 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.102 3.898 4 C -0.263 4.263 5 C -0.079 4.079 6 C -0.187 4.187 7 C 0.131 3.869 8 N -0.743 5.743 9 C 0.094 3.906 10 C -0.570 4.570 11 H 0.101 0.899 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.693 3.307 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.188 1.188 18 S 2.688 3.312 19 C -0.831 4.831 20 O -0.914 6.914 21 O -0.941 6.941 22 C -0.225 4.225 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.171 0.829 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.370 -12.178 6.221 16.033 hybrid contribution 0.231 0.335 1.459 1.515 sum -8.139 -11.843 7.681 16.294 Atomic orbital electron populations 1.22979 0.78936 1.03316 1.01274 1.86029 1.20899 1.27332 1.89072 1.18441 0.91314 0.83846 0.96221 1.21032 0.99365 0.92417 1.13485 1.20778 0.94158 0.96656 0.96323 1.21345 0.93191 0.99231 1.04943 1.17139 0.82472 0.93078 0.94198 1.55540 1.11623 1.32752 1.74341 1.19748 0.91954 0.82854 0.96050 1.21241 1.39601 0.97281 0.98866 0.89866 1.24834 0.95095 0.95909 0.96787 1.69888 1.43690 1.06089 1.32938 0.87004 0.80427 0.78198 0.85058 1.19726 1.20780 1.18829 1.05523 0.74638 0.74617 0.76413 1.30695 1.12252 1.16517 1.23596 1.93681 1.48557 1.72987 1.76222 1.93624 1.63818 1.75087 1.61617 1.20087 0.92586 0.96652 1.13142 0.92752 0.88744 0.92877 0.86102 0.85777 0.82856 0.93807 0.94518 0.92380 0.85295 0.85429 0.85602 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.67 10.49 -19.42 -0.20 -4.87 16 3 C 0.15 2.40 6.68 -39.25 -0.26 2.14 16 4 C -0.24 -3.59 9.03 -39.40 -0.36 -3.94 16 5 C -0.06 -0.95 10.03 -39.64 -0.40 -1.35 16 6 C -0.17 -3.14 9.04 -39.36 -0.36 -3.49 16 7 C 0.23 4.44 6.07 -83.81 -0.51 3.93 16 8 N -0.92 -18.45 2.91 -59.82 -0.17 -18.62 16 9 C 0.22 4.80 3.44 -5.19 -0.02 4.79 16 10 C -0.53 -14.41 8.45 -34.44 -0.29 -14.70 16 11 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 12 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 13 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 14 Si 0.87 20.01 27.47 -169.99 -4.67 15.34 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 18 S 2.60 47.25 5.39 -107.50 -0.58 46.67 16 19 C -0.68 -8.24 10.89 101.05 1.10 -7.14 16 20 O -0.92 -20.54 17.14 -57.54 -0.99 -21.53 16 21 O -0.95 -18.99 14.83 -57.54 -0.85 -19.85 16 22 C -0.20 -3.61 8.32 -39.24 -0.33 -3.94 16 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 26 H 0.12 1.41 6.29 -52.48 -0.33 1.08 16 27 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 28 H 0.15 3.20 6.15 -52.49 -0.32 2.88 16 29 H 0.04 0.92 6.79 -51.93 -0.35 0.57 16 30 H 0.04 0.78 7.15 -51.93 -0.37 0.41 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.13 1.41 8.14 -51.92 -0.42 0.98 16 33 H 0.13 1.35 7.75 -51.93 -0.40 0.94 16 34 H 0.13 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.13 2.18 5.56 -52.49 -0.29 1.89 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -34.37 304.04 -6.78 -41.15 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.15 Total: 3.14 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -0.52 Total: -20.38 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.60 Total: -44.26 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -2.04 Total: -46.25 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Atomic # 16 Polarization: 47.25 SS G_CDS: -0.58 Total: 46.67 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.37 -6.78 -41.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553469295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.727 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds