Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00038 * 2 1 4 4 C 1.38808 * 120.01763 * 0.02567 * 3 2 1 5 5 C 1.38169 * 120.09271 * 179.97438 * 4 3 2 6 6 C 1.38155 * 120.13084 * 359.69733 * 5 4 3 7 7 C 1.38931 * 120.03024 * 0.55455 * 6 5 4 8 8 N 1.39673 * 120.04829 * 179.74239 * 7 6 5 9 9 C 1.46503 * 119.99794 * 24.72528 * 8 7 6 10 10 C 1.50701 * 109.47075 * 275.00369 * 9 8 7 11 11 H 1.08002 * 119.99803 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99766 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99668 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00468 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47320 * 89.99847 * 14 12 10 16 16 H 1.48497 * 109.47545 * 210.00576 * 14 12 10 17 17 H 1.48504 * 109.46656 * 330.00019 * 14 12 10 18 18 S 1.65599 * 120.00213 * 204.72513 * 8 7 6 19 19 C 1.81395 * 104.44748 * 266.07202 * 18 8 7 20 20 O 1.42105 * 104.27655 * 149.99896 * 18 8 7 21 21 O 1.42101 * 104.27764 * 22.14333 * 18 8 7 22 22 C 1.38574 * 120.01641 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47367 * 59.99551 * 1 2 3 24 24 H 1.09002 * 109.47492 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46895 * 299.99444 * 1 2 3 26 26 H 1.08008 * 119.95658 * 359.97350 * 4 3 2 27 27 H 1.08007 * 119.93788 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.99123 * 180.27177 * 6 5 4 29 29 H 1.09003 * 109.46931 * 34.99962 * 9 8 7 30 30 H 1.08993 * 109.47392 * 155.00031 * 9 8 7 31 31 H 0.96998 * 119.99772 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47420 * 291.62015 * 19 18 8 33 33 H 1.08998 * 109.47499 * 51.62641 * 19 18 8 34 34 H 1.09005 * 109.46927 * 171.62508 * 19 18 8 35 35 H 1.07998 * 120.06332 * 0.04621 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3752 0.0005 5 6 1.9160 3.6071 0.0011 6 6 3.2954 3.6844 0.0074 7 6 4.0569 2.5224 0.0016 8 7 5.4514 2.6001 0.0025 9 6 6.1184 3.7887 0.5397 10 6 6.2044 4.8442 -0.5325 11 1 5.8028 4.6489 -1.5159 12 6 6.7967 6.0587 -0.2583 13 7 6.8722 6.9796 -1.1943 14 14 7.4921 6.3961 1.4422 15 1 8.9147 5.9729 1.4883 16 1 7.3979 7.8486 1.7363 17 1 6.7161 5.6350 2.4541 18 16 6.3509 1.3487 -0.6036 19 6 6.7379 0.3268 0.8443 20 8 7.5265 1.9718 -1.1028 21 8 5.4588 0.6647 -1.4727 22 6 3.4298 1.2838 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2118 2.3182 0.0005 27 1 1.3256 4.5116 0.0011 28 1 3.7820 4.6485 0.0122 29 1 5.5481 4.1747 1.3846 30 1 7.1227 3.5237 0.8700 31 1 7.2886 7.8342 -1.0013 32 1 7.4223 0.8673 1.4982 33 1 5.8193 0.1016 1.3861 34 1 7.2047 -0.6029 0.5185 35 1 4.0192 0.3788 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553469295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = -89.564418 kcal Electronic energy + Delta-G solvation = -21089.989734 eV Core-core repulsion = 17794.495261 eV Total energy + Delta-G solvation = -3295.494473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11408 -39.17071 -38.27306 -37.02365 -36.49746 -34.55987 -31.93354 -30.58483 -30.35739 -29.13657 -27.84737 -24.45652 -23.78799 -22.42757 -20.27430 -19.14876 -19.11174 -18.35533 -17.46965 -17.21230 -16.83934 -16.58848 -16.52458 -16.31046 -15.66581 -14.65482 -14.63317 -14.52219 -14.41110 -14.01337 -13.95069 -13.78173 -13.53442 -13.19236 -13.14578 -12.88321 -12.76648 -12.63705 -12.43074 -12.22424 -11.91295 -11.87131 -11.70116 -11.56802 -10.89285 -10.76741 -9.33139 -8.82623 -8.26633 -6.32656 -0.79925 0.45934 0.57785 1.37789 1.41443 1.48435 1.54778 2.36399 2.41306 2.79297 3.01058 3.04799 3.16415 3.77126 3.94322 4.06879 4.09795 4.22942 4.32496 4.47053 4.49870 4.57157 4.65664 4.70223 4.81252 4.83428 4.96307 5.07941 5.37053 5.41402 5.44762 5.64635 5.75567 6.06269 6.29944 6.54430 6.69937 7.28362 8.90858 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.006785 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.550377 B = 4126.002790 C = 5150.963779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.147 3.853 4 C -0.232 4.232 5 C -0.055 4.055 6 C -0.197 4.197 7 C 0.208 3.792 8 N -0.930 5.930 9 C 0.222 3.778 10 C -0.532 4.532 11 H 0.025 0.975 12 C 0.010 3.990 13 N -0.947 5.947 14 Si 0.940 3.060 15 H -0.265 1.265 16 H -0.281 1.281 17 H -0.227 1.227 18 S 2.577 3.423 19 C -0.640 4.640 20 O -0.982 6.982 21 O -0.982 6.982 22 C -0.216 4.216 23 H 0.062 0.938 24 H 0.120 0.880 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.149 0.851 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -14.342 10.403 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.101 3.899 4 C -0.252 4.252 5 C -0.074 4.074 6 C -0.219 4.219 7 C 0.111 3.889 8 N -0.752 5.752 9 C 0.099 3.901 10 C -0.571 4.571 11 H 0.043 0.957 12 C -0.188 4.188 13 N -0.587 5.587 14 Si 0.761 3.239 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.149 1.149 18 S 2.677 3.323 19 C -0.795 4.795 20 O -0.973 6.973 21 O -0.972 6.972 22 C -0.238 4.238 23 H 0.080 0.920 24 H 0.138 0.862 25 H 0.089 0.911 26 H 0.177 0.823 27 H 0.167 0.833 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.722 -14.461 9.442 19.819 hybrid contribution 0.473 0.874 0.361 1.057 sum -9.249 -13.587 9.803 19.138 Atomic orbital electron populations 1.23381 0.76219 1.05603 1.02481 1.86021 1.23671 1.26368 1.88619 1.18602 0.91113 0.85100 0.95105 1.21385 1.01170 0.91185 1.11440 1.21055 0.92975 0.98445 0.94934 1.21263 0.94872 0.97992 1.07806 1.17328 0.82241 0.93856 0.95486 1.55419 1.12199 1.32815 1.74727 1.19537 0.93316 0.82584 0.94672 1.21437 1.38572 0.99170 0.97949 0.95669 1.25888 0.95533 0.95426 1.01910 1.70078 1.45690 1.06886 1.36026 0.85841 0.79981 0.78409 0.79634 1.19034 1.20684 1.14930 1.05758 0.73294 0.74813 0.78421 1.30329 1.14447 1.15812 1.18874 1.93611 1.49898 1.74724 1.79042 1.93573 1.64240 1.74978 1.64457 1.20213 0.93729 0.96158 1.13708 0.91959 0.86157 0.91114 0.82336 0.83298 0.85976 0.92091 0.92767 0.92373 0.82920 0.82787 0.82011 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.78 10.49 -92.40 -0.97 -9.75 16 3 C 0.15 4.50 6.68 22.49 0.15 4.65 16 4 C -0.23 -6.26 9.03 22.39 0.20 -6.06 16 5 C -0.06 -1.70 10.03 22.23 0.22 -1.48 16 6 C -0.20 -7.72 9.04 22.42 0.20 -7.52 16 7 C 0.21 8.19 6.07 38.20 0.23 8.42 16 8 N -0.93 -37.90 2.91 -343.18 -1.00 -38.90 16 9 C 0.22 9.96 3.44 85.63 0.29 10.26 16 10 C -0.53 -30.52 8.45 25.60 0.22 -30.30 16 11 H 0.02 1.68 8.06 -2.91 -0.02 1.65 16 12 C 0.01 0.59 5.47 84.65 0.46 1.06 16 13 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 14 Si 0.94 41.37 27.47 68.60 1.88 43.25 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.23 -8.56 6.54 99.48 0.65 -7.91 16 18 S 2.58 93.97 5.39 -56.49 -0.30 93.67 16 19 C -0.64 -12.77 10.89 113.37 1.23 -11.53 16 20 O -0.98 -45.27 17.14 -127.65 -2.19 -47.46 16 21 O -0.98 -39.99 14.83 -127.65 -1.89 -41.89 16 22 C -0.22 -7.53 8.32 22.49 0.19 -7.35 16 23 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 24 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.16 3.01 6.29 -2.91 -0.02 2.99 16 27 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 28 H 0.12 5.47 6.15 -2.91 -0.02 5.46 16 29 H 0.06 2.51 6.79 -2.39 -0.02 2.50 16 30 H 0.05 2.24 7.15 -2.39 -0.02 2.22 16 31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.15 2.46 7.75 -2.39 -0.02 2.45 16 34 H 0.16 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.14 4.45 5.56 -2.91 -0.02 4.43 16 Total: -1.00 -82.36 304.04 1.40 -80.96 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.05 Total: 17.77 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 4.52 Total: -38.48 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -0.70 Total: -98.08 kcal Atomic # 8 Polarization: -94.05 SS G_CDS: -5.05 Total: -99.10 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Atomic # 16 Polarization: 93.97 SS G_CDS: -0.30 Total: 93.67 kcal Total: -82.36 1.40 -80.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553469295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.600 kcal (2) G-P(sol) polarization free energy of solvation -82.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds