Wall clock time and date at job start Tue Mar 31 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76196 * 100.00496 * 2 1 4 4 C 1.39280 * 120.44687 * 179.97438 * 3 2 1 5 5 C 1.39129 * 118.43221 * 180.02562 * 4 3 2 6 6 N 1.38636 * 120.43630 * 179.97438 * 5 4 3 7 7 C 1.46498 * 119.99765 * 5.01520 * 6 5 4 8 8 C 1.46497 * 119.99859 * 185.02056 * 6 5 4 9 9 C 1.50700 * 109.47126 * 89.99977 * 8 6 5 10 10 H 1.08005 * 120.00436 * 359.97438 * 9 8 6 11 11 C 1.37881 * 120.00348 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99548 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00310 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47488 * 89.99888 * 13 11 9 15 15 H 1.48505 * 109.47002 * 210.00216 * 13 11 9 16 16 H 1.48503 * 109.47385 * 329.99750 * 13 11 9 17 17 N 1.33137 * 119.13399 * 359.97438 * 5 4 3 18 18 C 1.32501 * 120.81420 * 0.02562 * 17 5 4 19 19 S 1.76203 * 119.14427 * 180.02562 * 18 17 5 20 20 C 1.80992 * 100.00163 * 179.97438 * 19 18 17 21 21 N 1.32504 * 121.71980 * 359.97438 * 18 17 5 22 22 H 1.09011 * 109.46668 * 300.00057 * 1 2 3 23 23 H 1.08994 * 109.47122 * 59.99750 * 1 2 3 24 24 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.78544 * 0.04107 * 4 3 2 26 26 H 1.09008 * 109.46896 * 90.00008 * 7 6 5 27 27 H 1.08993 * 109.47321 * 210.00350 * 7 6 5 28 28 H 1.09001 * 109.47106 * 330.00784 * 7 6 5 29 29 H 1.09001 * 109.46772 * 209.99415 * 8 6 5 30 30 H 1.08994 * 109.47275 * 329.99821 * 8 6 5 31 31 H 0.96998 * 120.00289 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.46902 * 60.00205 * 20 19 18 33 33 H 1.09001 * 109.47092 * 179.97438 * 20 19 18 34 34 H 1.08991 * 109.47659 * 299.99761 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.4212 2.2216 0.0005 5 6 3.6146 3.5994 0.0011 6 7 4.8959 4.1287 0.0021 7 6 6.0555 3.2403 -0.1082 8 6 5.0902 5.5765 0.1137 9 6 5.2033 5.9576 1.5673 10 1 5.1366 5.1975 2.3317 11 6 5.3919 7.2767 1.9216 12 7 5.4736 8.2022 0.9909 13 14 5.5327 7.7489 3.7233 14 1 6.9569 7.6921 4.1402 15 1 5.0153 9.1276 3.9156 16 1 4.7379 6.8026 4.5468 17 7 2.5530 4.4029 0.0005 18 6 1.3250 3.9053 0.0000 19 16 -0.0483 5.0092 -0.0014 20 6 -1.4100 3.8169 -0.0025 21 7 1.1027 2.5990 -0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 4.2632 1.5453 0.0003 26 1 6.3095 3.1033 -1.1594 27 1 6.9029 3.6821 0.4158 28 1 5.8167 2.2743 0.3367 29 1 6.0033 5.8618 -0.4087 30 1 4.2401 6.0926 -0.3321 31 1 5.6059 9.1303 1.2400 32 1 -1.3457 3.1912 0.8877 33 1 -2.3603 4.3508 -0.0029 34 1 -1.3442 3.1909 -0.8922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563418934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:32 Heat of formation + Delta-G solvation = 54.563162 kcal Electronic energy + Delta-G solvation = -17987.863640 eV Core-core repulsion = 15173.664630 eV Total energy + Delta-G solvation = -2814.199010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18931 -36.51336 -32.89371 -32.61943 -30.95690 -28.99489 -28.79052 -27.96374 -25.87957 -24.16687 -23.24598 -21.32619 -18.27164 -17.20690 -16.46371 -16.17483 -15.79556 -14.95586 -14.77134 -14.59104 -14.39055 -13.85414 -13.73094 -13.50848 -13.32711 -13.11979 -12.61335 -12.38516 -12.17176 -11.69713 -11.27629 -11.07529 -10.84882 -10.80770 -10.71144 -10.49245 -10.33541 -10.13296 -10.02394 -9.48792 -8.69046 -8.44768 -7.88158 -7.48864 -7.14116 -6.05380 -4.11626 1.30780 1.48924 1.60355 1.75509 2.12761 2.49934 3.28769 3.35698 3.39818 3.65303 4.20722 4.42640 4.98699 5.10706 5.12968 5.22562 5.23508 5.28214 5.28341 5.40813 5.68967 5.70811 5.79827 5.85978 5.86645 6.12551 6.27998 6.88371 7.26924 7.43264 7.75762 7.92054 8.09051 8.18888 8.62254 8.92306 9.52934 11.01232 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.005478 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.790998 B = 5110.475562 C = 6095.516986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.071 6.071 3 C 0.196 3.804 4 C -0.293 4.293 5 C 0.471 3.529 6 N -0.571 5.571 7 C 0.093 3.907 8 C 0.248 3.752 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.275 1.275 17 N -0.536 5.536 18 C 0.351 3.649 19 S 0.001 5.999 20 C -0.144 4.144 21 N -0.588 5.588 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.140 0.860 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 -14.145 -3.436 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.165 5.835 3 C -0.060 4.060 4 C -0.332 4.332 5 C 0.222 3.778 6 N -0.278 5.278 7 C -0.051 4.051 8 C 0.129 3.871 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.210 1.210 16 H -0.200 1.200 17 N -0.264 5.264 18 C -0.031 4.031 19 S 0.233 5.767 20 C -0.314 4.314 21 N -0.317 5.317 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.158 0.842 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.360 -13.023 -3.471 16.408 hybrid contribution 0.187 -0.486 1.081 1.200 sum -9.172 -13.508 -2.389 16.502 Atomic orbital electron populations 1.23362 0.94248 1.05506 1.06837 1.85570 1.07677 0.98499 1.91705 1.22751 0.91471 0.97823 0.93922 1.21492 0.97143 0.95442 1.19115 1.18284 0.86692 0.87313 0.85533 1.47160 1.00226 1.09895 1.70540 1.21706 0.88733 0.93956 1.00706 1.19458 0.98255 0.72009 0.97374 1.21386 1.50218 0.93009 0.91974 0.92648 1.24893 0.95056 0.96171 0.97672 1.69926 1.49402 1.01242 1.32523 0.86516 0.78129 0.77908 0.84994 1.20651 1.20976 1.19978 1.68142 0.96797 1.38247 1.23210 1.24364 0.95189 0.90644 0.92899 1.85962 0.92543 1.06991 1.91197 1.23473 0.98842 1.02499 1.06545 1.68909 1.33370 1.02219 1.27229 0.89453 0.89473 0.88503 0.84207 0.93307 0.90136 0.92036 0.94937 0.92854 0.92661 0.89621 0.88201 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.68 101.05 0.98 -0.32 16 2 S -0.07 -0.91 22.73 -107.50 -2.44 -3.36 16 3 C 0.20 3.32 7.00 -16.59 -0.12 3.21 16 4 C -0.29 -5.31 9.09 -38.86 -0.35 -5.67 16 5 C 0.47 10.12 7.38 -154.75 -1.14 8.98 16 6 N -0.57 -12.39 2.96 -183.02 -0.54 -12.93 16 7 C 0.09 1.53 10.30 59.85 0.62 2.15 16 8 C 0.25 6.42 5.23 -5.20 -0.03 6.39 16 9 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 17 N -0.54 -12.31 9.18 -12.75 -0.12 -12.43 16 18 C 0.35 6.95 7.85 -90.93 -0.71 6.23 16 19 S 0.00 0.01 22.89 -107.50 -2.46 -2.45 16 20 C -0.14 -1.63 9.61 101.05 0.97 -0.66 16 21 N -0.59 -10.30 7.98 -12.31 -0.10 -10.40 16 22 H 0.09 0.91 8.14 -51.91 -0.42 0.49 16 23 H 0.09 0.88 8.13 -51.92 -0.42 0.46 16 24 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 25 H 0.14 2.18 6.13 -52.48 -0.32 1.86 16 26 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 28 H 0.06 0.87 6.04 -51.93 -0.31 0.56 16 29 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.05 1.53 7.33 -51.93 -0.38 1.15 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.08 0.97 8.11 -51.92 -0.42 0.55 16 33 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.08 0.94 8.11 -51.92 -0.42 0.52 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -31.70 319.57 -9.69 -41.40 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.35 Total: -2.93 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.21 Total: 6.91 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.02 Total: -61.25 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -4.90 Total: -5.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.70 -9.69 -41.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563418934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.958 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds