Wall clock time and date at job start Tue Mar 31 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36000 * 116.99985 * 2 1 4 4 C 1.38709 * 119.98041 * 0.28391 * 3 2 1 5 5 C 1.38109 * 120.01709 * 180.23092 * 4 3 2 6 6 C 1.38863 * 119.98193 * 359.48715 * 5 4 3 7 7 N 1.39941 * 120.02070 * 180.27779 * 6 5 4 8 8 C 1.46496 * 119.99960 * 335.00198 * 7 6 5 9 9 S 1.65595 * 119.99911 * 155.00008 * 7 6 5 10 10 O 1.42101 * 104.27883 * 206.07034 * 9 7 6 11 11 O 1.42098 * 104.27989 * 333.92943 * 9 7 6 12 12 C 1.81399 * 104.45039 * 90.00275 * 9 7 6 13 13 C 1.50696 * 109.47442 * 179.97438 * 12 9 7 14 14 H 1.08005 * 120.00109 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00211 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99816 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99990 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47119 * 90.00548 * 17 15 13 19 19 H 1.48497 * 109.47206 * 210.00217 * 17 15 13 20 20 H 1.48497 * 109.46958 * 330.00184 * 17 15 13 21 21 C 1.38866 * 119.96096 * 0.25439 * 6 5 4 22 22 C 1.38109 * 119.97704 * 0.02562 * 21 6 5 23 23 H 1.09004 * 109.47318 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.47162 * 299.99465 * 1 2 3 25 25 H 1.08999 * 109.47594 * 59.99376 * 1 2 3 26 26 H 1.07998 * 119.98839 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.01139 * 179.77132 * 5 4 3 28 28 H 1.09003 * 109.46851 * 89.99744 * 8 7 6 29 29 H 1.08997 * 109.47151 * 210.00163 * 8 7 6 30 30 H 1.08999 * 109.47286 * 330.00015 * 8 7 6 31 31 H 1.09004 * 109.46850 * 299.99938 * 12 9 7 32 32 H 1.08999 * 109.46997 * 59.99576 * 12 9 7 33 33 H 0.96998 * 119.99853 * 179.97438 * 16 15 13 34 34 H 1.08000 * 120.00913 * 180.02562 * 21 6 5 35 35 H 1.08003 * 119.98457 * 180.02562 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2905 2.3748 0.0060 5 6 1.9167 3.6058 0.0011 6 6 3.3034 3.6789 0.0011 7 7 3.9387 4.9258 0.0021 8 6 3.2467 6.1009 -0.5330 9 16 5.4728 5.0729 0.6082 10 8 5.5565 6.4290 1.0247 11 8 5.5827 4.0106 1.5454 12 6 6.5534 4.7775 -0.8185 13 6 7.9937 4.8863 -0.3888 14 1 8.2350 5.1103 0.6398 15 6 9.0036 4.6988 -1.3086 16 7 8.7099 4.4256 -2.5611 17 14 10.7890 4.8344 -0.7761 18 1 11.2777 3.5019 -0.3391 19 1 11.6107 5.3133 -1.9165 20 1 10.8978 5.7956 0.3506 21 6 4.0594 2.5141 0.0006 22 6 3.4315 1.2840 -0.0005 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2121 2.3177 0.0102 27 1 1.3281 4.5113 0.0020 28 1 2.6882 6.5887 0.2659 29 1 3.9778 6.7976 -0.9431 30 1 2.5593 5.7907 -1.3199 31 1 6.3666 3.7796 -1.2153 32 1 6.3477 5.5196 -1.5899 33 1 9.4204 4.2940 -3.2082 34 1 5.1379 2.5701 0.0010 35 1 4.0193 0.3779 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566013803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:57 Heat of formation + Delta-G solvation = -77.827072 kcal Electronic energy + Delta-G solvation = -20590.384106 eV Core-core repulsion = 17295.398602 eV Total energy + Delta-G solvation = -3294.985503 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06928 -38.09077 -36.38872 -35.19781 -34.88509 -33.42246 -31.01980 -29.36101 -29.10715 -27.23065 -25.90908 -23.64530 -22.38591 -21.72410 -18.76833 -18.10350 -17.41890 -16.66677 -16.40323 -15.96114 -15.68291 -15.38480 -14.89057 -14.48072 -14.19627 -13.87910 -13.55408 -13.23248 -12.82070 -12.58637 -12.53629 -12.33647 -12.18887 -11.95828 -11.49874 -11.41206 -11.27857 -11.22580 -11.01394 -10.94954 -10.66934 -10.56348 -9.94091 -9.82237 -9.14624 -8.84739 -8.76394 -7.43964 -6.38631 -4.50756 1.06863 1.47636 1.61550 3.18812 3.20373 3.25343 3.30277 3.35553 3.90064 4.19494 4.68020 4.79061 4.80691 4.91393 4.96139 5.02268 5.05361 5.12078 5.33513 5.41395 5.55295 5.60610 5.73607 5.82393 5.85884 6.06620 6.22096 6.41558 6.51781 6.65127 6.69648 6.80769 7.10854 7.37005 7.50792 7.67575 8.51101 9.17844 10.72792 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.004887 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.228949 B = 5727.708230 C = 6407.551128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.091 3.909 4 C -0.182 4.182 5 C -0.118 4.118 6 C 0.152 3.848 7 N -0.951 5.951 8 C 0.089 3.911 9 S 2.566 3.434 10 O -0.969 6.969 11 O -0.963 6.963 12 C -0.414 4.414 13 C -0.538 4.538 14 H 0.071 0.929 15 C 0.079 3.921 16 N -0.876 5.876 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.111 4.111 22 C -0.111 4.111 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.270 0.730 34 H 0.143 0.857 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.514 -3.980 0.867 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.046 3.954 4 C -0.202 4.202 5 C -0.141 4.141 6 C 0.056 3.944 7 N -0.774 5.774 8 C -0.056 4.056 9 S 2.669 3.331 10 O -0.959 6.959 11 O -0.954 6.954 12 C -0.550 4.550 13 C -0.578 4.578 14 H 0.089 0.911 15 C -0.128 4.128 16 N -0.512 5.512 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.132 4.132 22 C -0.130 4.130 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.161 0.839 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.185 -3.879 1.617 15.755 hybrid contribution 0.620 0.166 -0.514 0.823 sum -14.564 -3.713 1.103 15.071 Atomic orbital electron populations 1.22979 0.79047 1.03480 1.01097 1.86070 1.20811 1.27034 1.89474 1.18895 0.92244 0.83981 1.00287 1.20962 0.99559 0.91782 1.07863 1.20596 0.92432 0.97581 1.03453 1.17453 0.92190 0.84338 1.00458 1.55970 1.34412 1.11758 1.75272 1.21557 0.98668 0.86363 0.99004 1.06730 0.73243 0.74192 0.78970 1.93488 1.85073 1.35767 1.81608 1.93520 1.84765 1.56579 1.60524 1.27765 1.08306 1.07273 1.11637 1.20310 0.87440 1.53376 0.96642 0.91129 1.24924 1.00033 0.93350 0.94532 1.69951 1.33831 1.45081 1.02318 0.86355 0.82656 0.79137 0.78756 1.19775 1.20546 1.19034 1.21087 1.00949 0.90535 1.00676 1.20184 0.91137 0.98053 1.03666 0.88631 0.92920 0.92914 0.85497 0.85482 0.92240 0.90066 0.90786 0.89364 0.89529 0.92078 0.83923 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.13 10.50 -19.74 -0.21 -4.34 16 3 C 0.09 1.31 6.69 -39.24 -0.26 1.05 16 4 C -0.18 -2.35 9.03 -39.45 -0.36 -2.71 16 5 C -0.12 -1.66 9.13 -39.40 -0.36 -2.02 16 6 C 0.15 2.60 6.05 -83.69 -0.51 2.09 16 7 N -0.95 -16.80 3.33 -65.35 -0.22 -17.02 16 8 C 0.09 1.23 9.20 59.84 0.55 1.78 16 9 S 2.57 55.75 4.66 -107.50 -0.50 55.24 16 10 O -0.97 -22.88 17.09 -57.54 -0.98 -23.86 16 11 O -0.96 -22.76 15.17 -57.54 -0.87 -23.63 16 12 C -0.41 -9.89 5.80 36.00 0.21 -9.68 16 13 C -0.54 -14.64 9.13 -34.44 -0.31 -14.96 16 14 H 0.07 1.89 7.71 -52.48 -0.40 1.48 16 15 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 16 N -0.88 -24.35 13.29 55.43 0.74 -23.61 16 17 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 C -0.11 -1.99 8.42 -39.40 -0.33 -2.33 16 22 C -0.11 -1.76 9.98 -39.46 -0.39 -2.16 16 23 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.39 7.65 -51.92 -0.40 -0.01 16 25 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 26 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 27 H 0.13 1.46 7.13 -52.49 -0.37 1.09 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.11 7.79 -51.93 -0.40 0.71 16 30 H 0.07 0.82 7.47 -51.93 -0.39 0.43 16 31 H 0.09 2.08 7.18 -51.92 -0.37 1.71 16 32 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.14 2.74 5.13 -52.49 -0.27 2.47 16 35 H 0.14 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -33.18 308.39 -7.45 -40.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.16 Total: 1.96 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -0.87 Total: -25.66 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.52 Total: -40.63 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -2.06 Total: -51.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 55.75 SS G_CDS: -0.50 Total: 55.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.18 -7.45 -40.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566013803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.194 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds