Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76202 * 99.99996 * 2 1 4 4 C 1.39283 * 120.44177 * 180.02562 * 3 2 1 5 5 C 1.39133 * 118.42420 * 179.97438 * 4 3 2 6 6 N 1.38636 * 120.42990 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99855 * 359.72344 * 6 5 4 8 8 H 1.08999 * 109.47480 * 35.27619 * 7 6 5 9 9 C 1.53008 * 109.47014 * 275.27545 * 7 6 5 10 10 C 1.50696 * 109.47278 * 155.27764 * 7 6 5 11 11 H 1.08002 * 120.00157 * 359.97438 * 10 7 6 12 12 C 1.37881 * 120.00447 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99635 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 120.00210 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47212 * 89.99990 * 14 12 10 16 16 H 1.48498 * 109.47421 * 210.00302 * 14 12 10 17 17 H 1.48504 * 109.47342 * 330.00327 * 14 12 10 18 18 N 1.33131 * 119.13968 * 0.25046 * 5 4 3 19 19 C 1.32500 * 120.81017 * 359.48958 * 18 5 4 20 20 S 1.76204 * 119.14130 * 180.28773 * 19 18 5 21 21 C 1.80993 * 100.00163 * 180.23066 * 20 19 18 22 22 N 1.32510 * 121.72242 * 0.52345 * 19 18 5 23 23 H 1.09008 * 109.47320 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47603 * 299.99984 * 1 2 3 25 25 H 1.08998 * 109.47072 * 60.00154 * 1 2 3 26 26 H 1.08000 * 120.78399 * 359.97438 * 4 3 2 27 27 H 0.97001 * 120.00295 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47169 * 299.99790 * 9 7 6 29 29 H 1.08995 * 109.47066 * 60.00517 * 9 7 6 30 30 H 1.09005 * 109.46722 * 180.02562 * 9 7 6 31 31 H 0.97000 * 120.00295 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.47053 * 180.02562 * 21 20 19 33 33 H 1.09008 * 109.47313 * 299.99819 * 21 20 19 34 34 H 1.08993 * 109.47428 * 59.99813 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4210 2.2217 -0.0005 5 6 3.6143 3.5996 -0.0011 6 7 4.8956 4.1289 -0.0011 7 6 6.0570 3.2360 0.0056 8 1 5.8349 2.3466 -0.5840 9 6 6.3776 2.8270 1.4447 10 6 7.2430 3.9500 -0.5897 11 1 7.1418 4.9671 -0.9386 12 6 8.4576 3.3050 -0.6891 13 7 8.5811 2.0667 -0.2638 14 14 9.9275 4.1899 -1.4276 15 1 10.6713 4.8958 -0.3535 16 1 10.8223 3.2020 -2.0824 17 1 9.4575 5.1754 -2.4342 18 7 2.5528 4.4030 0.0040 19 6 1.3248 3.9053 -0.0006 20 16 -0.0486 5.0092 -0.0012 21 6 -1.4102 3.8168 -0.0009 22 7 1.1025 2.5989 -0.0001 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.2630 1.5454 -0.0005 27 1 5.0231 5.0905 -0.0011 28 1 6.5997 3.7165 2.0343 29 1 5.5198 2.3105 1.8753 30 1 7.2420 2.1630 1.4497 31 1 9.4354 1.6126 -0.3340 32 1 -2.3606 4.3507 -0.0017 33 1 -1.3450 3.1905 -0.8906 34 1 -1.3453 3.1913 0.8893 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584421445.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = 40.630327 kcal Electronic energy + Delta-G solvation = -17821.343959 eV Core-core repulsion = 15006.540776 eV Total energy + Delta-G solvation = -2814.803183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23120 -36.42659 -33.54718 -32.39428 -30.77523 -29.10873 -28.92067 -28.27716 -25.43253 -24.26418 -23.36051 -20.77827 -18.55693 -17.84021 -16.52251 -16.01470 -15.53993 -15.02497 -14.94666 -14.68559 -14.37466 -13.87204 -13.57630 -13.54293 -13.43000 -12.77330 -12.54985 -12.38847 -12.26642 -11.48480 -11.17593 -10.94684 -10.87603 -10.82846 -10.71887 -10.48732 -10.33413 -10.17398 -10.06198 -9.22610 -8.93269 -8.64273 -7.91450 -7.68699 -7.23291 -6.26965 -4.35918 1.25356 1.38046 1.59445 1.70421 2.11461 2.39852 3.18863 3.26018 3.28750 3.83294 4.12609 4.28012 4.99674 5.06649 5.08978 5.11388 5.19686 5.20542 5.22266 5.67925 5.75829 5.79063 5.82522 6.32951 6.55360 6.77284 6.86199 7.11742 7.22097 7.53965 7.64450 7.82602 7.97420 8.36278 8.49528 8.75614 9.31795 10.79320 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.004500 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.074680 B = 6220.880851 C = 7266.654459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.057 6.057 3 C 0.190 3.810 4 C -0.269 4.269 5 C 0.465 3.535 6 N -0.675 5.675 7 C 0.266 3.734 8 H 0.046 0.954 9 C -0.154 4.154 10 C -0.535 4.535 11 H 0.064 0.936 12 C 0.069 3.931 13 N -0.884 5.884 14 Si 0.905 3.095 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.575 5.575 19 C 0.351 3.649 20 S -0.014 6.014 21 C -0.139 4.139 22 N -0.586 5.586 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.401 0.599 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.096 0.904 31 H 0.267 0.733 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.341 -1.840 1.167 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.180 5.820 3 C -0.064 4.064 4 C -0.308 4.308 5 C 0.214 3.786 6 N -0.300 5.300 7 C 0.164 3.836 8 H 0.064 0.936 9 C -0.213 4.213 10 C -0.573 4.573 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.197 1.197 18 N -0.306 5.306 19 C -0.032 4.032 20 S 0.217 5.783 21 C -0.309 4.309 22 N -0.315 5.315 23 H 0.116 0.884 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.168 0.832 27 H 0.236 0.764 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.107 -1.368 1.181 16.208 hybrid contribution 0.945 -0.087 -0.344 1.010 sum -15.162 -1.455 0.836 15.255 Atomic orbital electron populations 1.23382 0.94804 1.05565 1.06622 1.85844 1.06892 0.97907 1.91335 1.22871 0.91475 0.98067 0.93964 1.21693 0.97394 0.95776 1.15915 1.18490 0.86507 0.88324 0.85241 1.45615 1.01320 1.10660 1.72365 1.18991 0.80832 0.89663 0.94096 0.93602 1.22209 1.01162 1.00779 0.97111 1.21129 0.93979 1.00418 1.41778 0.91747 1.24857 0.98771 0.94915 0.94930 1.69859 1.25706 1.10910 1.45657 0.86377 0.81746 0.79326 0.79317 1.20408 1.20939 1.19736 1.68000 0.97320 1.38946 1.26301 1.24201 0.94690 0.90988 0.93291 1.85645 0.93137 1.07823 1.91656 1.23460 0.98345 1.02245 1.06823 1.68909 1.33475 1.01977 1.27146 0.88440 0.89572 0.89565 0.83160 0.76392 0.94805 0.96665 0.88584 0.92343 0.88157 0.89477 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.68 101.05 0.98 -0.41 16 2 S -0.06 -0.81 22.73 -107.50 -2.44 -3.25 16 3 C 0.19 3.35 7.00 -16.59 -0.12 3.23 16 4 C -0.27 -5.33 8.67 -38.86 -0.34 -5.67 16 5 C 0.47 9.65 7.68 -154.75 -1.19 8.46 16 6 N -0.67 -14.43 5.22 -54.98 -0.29 -14.72 16 7 C 0.27 6.31 2.26 -69.08 -0.16 6.15 16 8 H 0.05 1.17 6.51 -51.93 -0.34 0.84 16 9 C -0.15 -3.54 9.22 37.16 0.34 -3.20 16 10 C -0.53 -13.71 8.73 -34.44 -0.30 -14.01 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 13 N -0.88 -23.50 11.32 55.43 0.63 -22.87 16 14 Si 0.91 20.18 29.54 -169.99 -5.02 15.15 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 N -0.58 -11.53 10.43 -12.75 -0.13 -11.66 16 19 C 0.35 6.26 7.85 -90.93 -0.71 5.54 16 20 S -0.01 -0.20 22.89 -107.50 -2.46 -2.66 16 21 C -0.14 -1.36 9.61 101.05 0.97 -0.39 16 22 N -0.59 -9.88 7.98 -12.31 -0.10 -9.98 16 23 H 0.10 0.76 8.14 -51.91 -0.42 0.34 16 24 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 25 H 0.09 0.90 8.13 -51.92 -0.42 0.48 16 26 H 0.15 3.06 6.26 -52.49 -0.33 2.73 16 27 H 0.40 8.24 8.66 -40.82 -0.35 7.89 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.01 0.31 7.72 -51.93 -0.40 -0.09 16 30 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 31 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.10 0.71 8.14 -51.91 -0.42 0.29 16 33 H 0.09 0.87 8.11 -51.91 -0.42 0.45 16 34 H 0.09 0.86 8.11 -51.92 -0.42 0.44 16 LS Contribution 315.62 15.07 4.76 4.76 Total: -1.00 -27.35 315.62 -9.91 -37.26 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.23 Total: 6.58 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.61 Total: 1.39 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.11 Total: -59.23 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -4.90 Total: -5.91 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.35 -9.91 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584421445.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.892 kcal (2) G-P(sol) polarization free energy of solvation -27.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds