Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76196 * 100.00072 * 2 1 4 4 C 1.39280 * 120.44518 * 180.25627 * 3 2 1 5 5 C 1.39139 * 118.42924 * 180.26084 * 4 3 2 6 6 N 1.38631 * 120.43348 * 179.75825 * 5 4 3 7 7 C 1.46500 * 119.99933 * 359.72397 * 6 5 4 8 8 H 1.09002 * 109.47092 * 324.99747 * 7 6 5 9 9 C 1.52997 * 109.47007 * 84.99696 * 7 6 5 10 10 C 1.50701 * 109.47209 * 204.99788 * 7 6 5 11 11 H 1.07999 * 119.99742 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00221 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00392 * 180.02562 * 12 10 7 14 14 Si 1.86799 * 119.99966 * 359.97438 * 12 10 7 15 15 H 1.48505 * 109.47157 * 90.00092 * 14 12 10 16 16 H 1.48496 * 109.47225 * 210.00367 * 14 12 10 17 17 H 1.48502 * 109.47022 * 330.00490 * 14 12 10 18 18 N 1.33134 * 119.13266 * 359.48961 * 5 4 3 19 19 C 1.32503 * 120.81383 * 0.24885 * 18 5 4 20 20 S 1.76198 * 119.13942 * 180.02562 * 19 18 5 21 21 C 1.80994 * 100.00212 * 179.97438 * 20 19 18 22 22 N 1.32503 * 121.72025 * 0.02562 * 19 18 5 23 23 H 1.09001 * 109.46977 * 299.99789 * 1 2 3 24 24 H 1.08995 * 109.47167 * 60.00210 * 1 2 3 25 25 H 1.09000 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.78675 * 0.02562 * 4 3 2 27 27 H 0.96997 * 119.99793 * 179.72367 * 6 5 4 28 28 H 1.08998 * 109.47533 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.47853 * 300.00060 * 9 7 6 30 30 H 1.09002 * 109.47153 * 60.00089 * 9 7 6 31 31 H 0.96997 * 120.00462 * 179.97438 * 13 12 10 32 32 H 1.09005 * 109.47070 * 59.99582 * 21 20 19 33 33 H 1.09005 * 109.47486 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.46921 * 299.99906 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4210 2.2217 -0.0054 5 6 3.6144 3.5996 0.0004 6 7 4.8956 4.1289 0.0005 7 6 6.0571 3.2360 0.0005 8 1 5.8320 2.3472 0.5900 9 6 6.3847 2.8255 -1.4365 10 6 7.2402 3.9507 0.6009 11 1 7.1371 4.9682 0.9482 12 6 8.4542 3.3058 0.7069 13 7 9.4865 3.9292 1.2314 14 14 8.6322 1.5457 0.1070 15 1 9.0395 1.5484 -1.3212 16 1 9.6653 0.8494 0.9150 17 1 7.3333 0.8402 0.2499 18 7 2.5528 4.4030 0.0005 19 6 1.3248 3.9052 0.0001 20 16 -0.0485 5.0091 -0.0005 21 6 -1.4102 3.8168 -0.0018 22 7 1.1026 2.5989 0.0001 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.2631 1.5454 -0.0100 27 1 5.0231 5.0905 0.0005 28 1 7.2491 2.1615 -1.4366 29 1 5.5291 2.3085 -1.8709 30 1 6.6098 3.7143 -2.0260 31 1 10.3404 3.4754 1.3063 32 1 -1.3456 3.1906 0.8881 33 1 -2.3606 4.3506 -0.0018 34 1 -1.3445 3.1912 -0.8919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584421446.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = 50.150507 kcal Electronic energy + Delta-G solvation = -17908.652527 eV Core-core repulsion = 15094.262170 eV Total energy + Delta-G solvation = -2814.390357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37717 -36.68586 -33.59559 -32.47580 -31.12823 -29.53780 -29.02164 -28.65371 -25.37431 -24.43203 -23.51390 -20.87666 -18.75117 -17.89356 -16.78070 -16.25782 -15.61987 -15.30103 -15.03289 -14.89395 -14.48422 -13.93391 -13.65102 -13.57502 -13.53668 -13.18556 -12.74905 -12.47445 -12.36852 -12.33487 -11.72758 -11.04480 -10.97748 -10.92195 -10.82107 -10.48703 -10.35264 -10.18025 -9.75344 -9.40306 -9.05159 -8.82536 -8.00876 -7.83720 -7.39591 -6.31616 -4.36113 1.11745 1.28960 1.47474 1.56711 2.01938 2.30394 3.12560 3.21626 3.25593 3.65759 3.99010 4.18214 4.88581 5.00377 5.01241 5.04022 5.07468 5.09687 5.13152 5.54023 5.62578 5.66466 5.72040 6.02705 6.06708 6.25556 6.35856 6.55435 6.96670 7.00117 7.27560 7.57985 8.00788 8.31421 8.42199 8.69518 9.25896 10.80524 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.004998 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.341018 B = 5601.342017 C = 6734.254230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.059 6.059 3 C 0.194 3.806 4 C -0.276 4.276 5 C 0.467 3.533 6 N -0.668 5.668 7 C 0.240 3.760 8 H 0.045 0.955 9 C -0.168 4.168 10 C -0.538 4.538 11 H 0.083 0.917 12 C 0.081 3.919 13 N -0.886 5.886 14 Si 0.886 3.114 15 H -0.274 1.274 16 H -0.291 1.291 17 H -0.264 1.264 18 N -0.571 5.571 19 C 0.352 3.648 20 S -0.009 6.009 21 C -0.141 4.141 22 N -0.584 5.584 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.147 0.853 27 H 0.407 0.593 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.269 0.731 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.304 -5.793 -3.550 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.178 5.822 3 C -0.061 4.061 4 C -0.314 4.314 5 C 0.216 3.784 6 N -0.293 5.293 7 C 0.137 3.863 8 H 0.062 0.938 9 C -0.227 4.227 10 C -0.576 4.576 11 H 0.101 0.899 12 C -0.124 4.124 13 N -0.522 5.522 14 Si 0.715 3.285 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.189 1.189 18 N -0.301 5.301 19 C -0.030 4.030 20 S 0.223 5.777 21 C -0.310 4.310 22 N -0.313 5.313 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.165 0.835 27 H 0.244 0.756 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.022 -5.153 -3.486 20.013 hybrid contribution 0.429 -1.390 -0.310 1.488 sum -18.593 -6.543 -3.795 20.072 Atomic orbital electron populations 1.23390 0.94473 1.05678 1.06732 1.85820 1.07291 0.97811 1.91240 1.22876 0.91419 0.98146 0.93621 1.21637 0.97381 0.95674 1.16754 1.18448 0.86481 0.88248 0.85188 1.45179 1.00722 1.10623 1.72807 1.19308 0.83377 0.90647 0.93001 0.93763 1.22582 0.99538 1.01059 0.99499 1.20931 0.92563 1.02152 1.41918 0.89877 1.24822 0.95311 0.97983 0.94257 1.69850 1.01518 1.37519 1.43361 0.86883 0.78287 0.84856 0.78453 1.20077 1.21847 1.18939 1.68004 0.97270 1.38827 1.26023 1.24273 0.94751 0.90995 0.92964 1.85715 0.92953 1.07591 1.91415 1.23480 0.98420 1.02277 1.06832 1.68929 1.33414 1.02011 1.26954 0.89454 0.89486 0.88353 0.83517 0.75626 0.92938 0.94575 0.92136 0.92047 0.89436 0.88053 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.68 101.05 0.98 -0.29 16 2 S -0.06 -0.77 22.73 -107.50 -2.44 -3.22 16 3 C 0.19 3.21 7.00 -16.59 -0.12 3.09 16 4 C -0.28 -5.11 8.67 -38.86 -0.34 -5.45 16 5 C 0.47 9.19 7.68 -154.75 -1.19 8.00 16 6 N -0.67 -13.65 5.22 -54.98 -0.29 -13.94 16 7 C 0.24 5.35 1.85 -69.08 -0.13 5.22 16 8 H 0.04 1.01 5.57 -51.93 -0.29 0.72 16 9 C -0.17 -3.47 8.91 37.16 0.33 -3.14 16 10 C -0.54 -14.10 9.31 -34.44 -0.32 -14.43 16 11 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 12 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 13 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 14 Si 0.89 20.44 24.37 -169.99 -4.14 16.30 16 15 H -0.27 -6.14 6.87 56.52 0.39 -5.76 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.26 -5.79 6.53 56.52 0.37 -5.42 16 18 N -0.57 -10.96 10.43 -12.75 -0.13 -11.09 16 19 C 0.35 6.00 7.85 -90.93 -0.71 5.28 16 20 S -0.01 -0.12 22.89 -107.50 -2.46 -2.58 16 21 C -0.14 -1.29 9.61 101.05 0.97 -0.32 16 22 N -0.58 -9.32 7.98 -12.32 -0.10 -9.42 16 23 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.09 0.83 8.13 -51.92 -0.42 0.41 16 25 H 0.10 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.15 2.72 6.23 -52.49 -0.33 2.39 16 27 H 0.41 8.15 8.66 -40.82 -0.35 7.80 16 28 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 29 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.09 0.82 8.11 -51.91 -0.42 0.40 16 33 H 0.10 0.66 8.14 -51.91 -0.42 0.24 16 34 H 0.09 0.81 8.11 -51.91 -0.42 0.39 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -28.83 308.75 -8.85 -37.69 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.09 Total: 6.40 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.62 Total: 0.05 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.26 Total: -59.30 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.14 Total: 16.30 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -4.90 Total: -5.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.83 -8.85 -37.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584421446.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.840 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds