Wall clock time and date at job start Tue Mar 31 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35678 * 117.00209 * 2 1 4 4 N 1.32277 * 119.68256 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64699 * 179.97438 * 4 3 2 6 6 C 1.38082 * 120.83308 * 0.02562 * 5 4 3 7 7 C 1.38791 * 119.28941 * 359.97438 * 6 5 4 8 8 C 1.38422 * 118.48140 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.43925 * 179.97438 * 8 7 6 10 10 S 1.81398 * 109.46920 * 89.99744 * 9 8 7 11 11 O 1.42094 * 108.57965 * 294.48525 * 10 9 8 12 12 O 1.42099 * 108.57702 * 65.51344 * 10 9 8 13 13 C 1.81402 * 101.91677 * 179.97438 * 10 9 8 14 14 C 1.53005 * 109.47094 * 180.02562 * 13 10 9 15 15 C 1.50698 * 109.47174 * 180.02562 * 14 13 10 16 16 H 1.07999 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99612 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99657 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47083 * 59.99620 * 19 17 15 21 21 H 1.48497 * 109.46701 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46757 * 299.99749 * 19 17 15 23 23 H 1.09000 * 109.46890 * 299.99757 * 1 2 3 24 24 H 1.08999 * 109.46847 * 59.99975 * 1 2 3 25 25 H 1.09002 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.58104 * 180.02562 * 5 4 3 27 27 H 1.08003 * 120.35802 * 179.97438 * 6 5 4 28 28 H 1.08000 * 120.75891 * 180.02562 * 7 6 5 29 29 H 1.08999 * 109.46458 * 210.00089 * 9 8 7 30 30 H 1.09003 * 109.47043 * 329.99583 * 9 8 7 31 31 H 1.09000 * 109.47592 * 299.99661 * 13 10 9 32 32 H 1.08999 * 109.47210 * 60.00623 * 13 10 9 33 33 H 1.09005 * 109.46943 * 300.00417 * 14 13 10 34 34 H 1.09004 * 109.47072 * 59.99968 * 14 13 10 35 35 H 0.97001 * 120.00231 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 7 1.3185 2.3143 -0.0005 5 6 1.8769 3.5096 0.0000 6 6 3.2507 3.6491 0.0005 7 6 4.0484 2.5133 0.0011 8 6 3.4322 1.2738 0.0005 9 6 4.2558 0.0117 0.0005 10 16 4.5857 -0.4950 1.7108 11 8 5.4068 0.4891 2.3242 12 8 3.3537 -0.8506 2.3232 13 6 5.5678 -2.0014 1.4724 14 6 5.9467 -2.5843 2.8354 15 6 6.7631 -3.8353 2.6374 16 1 6.9889 -4.1804 1.6392 17 6 7.2210 -4.5399 3.7305 18 7 6.9457 -4.1199 4.9459 19 14 8.2325 -6.0911 3.4851 20 1 9.4666 -5.7626 2.7273 21 1 8.6002 -6.6566 4.8080 22 1 7.4351 -7.0867 2.7248 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.2515 4.3902 -0.0001 27 1 3.6996 4.6314 0.0005 28 1 5.1253 2.5948 0.0019 29 1 3.7092 -0.7787 -0.5137 30 1 5.1999 0.1939 -0.5130 31 1 4.9823 -2.7326 0.9151 32 1 6.4734 -1.7604 0.9156 33 1 6.5320 -1.8532 3.3932 34 1 5.0409 -2.8253 3.3919 35 1 7.2681 -4.6153 5.7150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598733405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:23 Heat of formation + Delta-G solvation = -107.722462 kcal Electronic energy + Delta-G solvation = -20242.995704 eV Core-core repulsion = 16946.713839 eV Total energy + Delta-G solvation = -3296.281865 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.75249 -38.90412 -37.92193 -36.97922 -35.86422 -34.99781 -33.11512 -32.33916 -29.09259 -28.15048 -27.48825 -24.11583 -23.92869 -22.99716 -19.84541 -19.38502 -18.85014 -18.26752 -17.58781 -17.18121 -16.96820 -16.83948 -16.51261 -16.18726 -15.42389 -15.27571 -15.11758 -14.49513 -14.39974 -14.11830 -13.87038 -13.71224 -13.15027 -13.06148 -12.98480 -12.87419 -12.75440 -12.59320 -12.33093 -12.19182 -12.18214 -12.08989 -11.69740 -11.11061 -10.77142 -10.63546 -10.62886 -9.44867 -8.24443 -6.39454 -1.04764 0.11618 0.22859 1.41354 1.45617 1.53696 1.93416 2.08676 2.38968 2.62797 2.77561 3.08233 3.10632 3.21230 3.56948 3.70992 4.01566 4.06157 4.08053 4.19403 4.36273 4.40986 4.41908 4.48081 4.70842 4.74467 4.81484 4.98235 5.13763 5.30450 5.31078 5.44687 5.69723 6.06888 6.16477 6.74771 6.75036 7.30857 8.87838 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032914 B = 0.003938 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.497681 B = 7108.896299 C = 7500.947832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.311 3.689 4 N -0.557 5.557 5 C 0.138 3.862 6 C -0.204 4.204 7 C -0.036 4.036 8 C -0.187 4.187 9 C -0.529 4.529 10 S 2.391 3.609 11 O -0.980 6.980 12 O -0.981 6.981 13 C -0.576 4.576 14 C 0.021 3.979 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.262 1.262 23 H 0.052 0.948 24 H 0.069 0.931 25 H 0.118 0.882 26 H 0.199 0.801 27 H 0.181 0.819 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.003 0.997 34 H 0.000 1.000 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 14.042 -16.395 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.131 3.869 4 N -0.281 5.281 5 C -0.017 4.017 6 C -0.223 4.223 7 C -0.062 4.062 8 C -0.192 4.192 9 C -0.659 4.659 10 S 2.582 3.418 11 O -0.977 6.977 12 O -0.978 6.978 13 C -0.707 4.707 14 C -0.018 4.018 15 C -0.580 4.580 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.800 3.200 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.187 1.187 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.136 0.864 26 H 0.216 0.784 27 H 0.198 0.802 28 H 0.190 0.810 29 H 0.182 0.818 30 H 0.203 0.797 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.633 14.035 -15.393 22.951 hybrid contribution 1.143 -1.042 -0.073 1.548 sum -8.490 12.994 -15.466 21.912 Atomic orbital electron populations 1.23094 0.75731 1.04697 1.02414 1.86240 1.24584 1.24447 1.87079 1.19966 0.89337 0.85669 0.91907 1.67437 1.41058 0.99368 1.20269 1.23265 0.94219 0.93846 0.90415 1.22466 0.94501 1.01007 1.04363 1.21987 1.02871 0.90308 0.91026 1.19238 0.90831 0.95655 1.13449 1.28944 1.10774 1.04458 1.21773 1.08726 0.75497 0.77756 0.79855 1.93469 1.69871 1.59278 1.75115 1.93485 1.44882 1.84239 1.75234 1.30122 1.15033 1.18033 1.07500 1.18808 0.96271 0.96759 0.89925 1.21556 1.33479 1.09095 0.93907 0.90198 1.26178 0.97592 1.01959 0.94700 1.70119 1.46925 1.41592 0.98990 0.85329 0.79001 0.78180 0.77522 1.18501 1.21070 1.18684 0.92927 0.91200 0.86422 0.78401 0.80185 0.81047 0.81808 0.79728 0.83651 0.83068 0.97837 0.98153 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.38 113.37 1.18 1.95 16 2 O -0.32 -9.24 9.54 -89.95 -0.86 -10.10 16 3 C 0.31 8.89 7.47 84.78 0.63 9.52 16 4 N -0.56 -14.06 9.22 -308.95 -2.85 -16.90 16 5 C 0.14 2.47 11.18 84.64 0.95 3.42 16 6 C -0.20 -3.26 10.11 22.36 0.23 -3.03 16 7 C -0.04 -0.73 9.85 22.45 0.22 -0.51 16 8 C -0.19 -4.86 5.17 -19.67 -0.10 -4.96 16 9 C -0.53 -12.32 5.73 71.24 0.41 -11.91 16 10 S 2.39 87.05 4.70 -56.49 -0.27 86.79 16 11 O -0.98 -41.36 18.10 -127.37 -2.31 -43.67 16 12 O -0.98 -44.09 18.10 -127.37 -2.30 -46.40 16 13 C -0.58 -21.72 5.74 71.98 0.41 -21.31 16 14 C 0.02 1.12 4.98 29.85 0.15 1.27 16 15 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 16 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 17 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 18 N -0.94 -58.41 13.29 21.45 0.28 -58.12 16 19 Si 0.98 43.63 29.54 68.60 2.03 45.65 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 23 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 24 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 25 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 28 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.16 3.23 7.55 -2.39 -0.02 3.21 16 30 H 0.19 2.59 8.10 -2.39 -0.02 2.57 16 31 H 0.15 4.68 8.14 -2.39 -0.02 4.66 16 32 H 0.15 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.17 321.76 -0.42 -86.59 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.08 Total: 11.87 kcal Atomic # 6 Polarization: -60.49 SS G_CDS: 4.77 Total: -55.72 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -2.56 Total: -75.03 kcal Atomic # 8 Polarization: -94.69 SS G_CDS: -5.47 Total: -100.16 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 87.05 SS G_CDS: -0.27 Total: 86.79 kcal Total: -86.17 -0.42 -86.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598733405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.130 kcal (2) G-P(sol) polarization free energy of solvation -86.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds