Wall clock time and date at job start Tue Mar 31 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99693 * 2 1 4 4 C 1.53002 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46928 * 65.00841 * 4 3 2 6 6 C 1.36962 * 119.99764 * 277.48802 * 5 4 3 7 7 H 1.08005 * 119.99795 * 313.50447 * 6 5 4 8 8 C 1.38968 * 120.00172 * 133.49914 * 6 5 4 9 9 N 1.31412 * 119.99832 * 354.32771 * 8 6 5 10 10 Si 1.86798 * 120.00172 * 174.31932 * 8 6 5 11 11 H 1.48509 * 109.46640 * 90.00354 * 10 8 6 12 12 H 1.48502 * 109.47363 * 210.00132 * 10 8 6 13 13 H 1.48497 * 109.47497 * 330.00906 * 10 8 6 14 14 C 1.34773 * 120.00168 * 97.48832 * 5 4 3 15 15 O 1.21653 * 119.99667 * 175.05433 * 14 5 4 16 16 C 1.47288 * 120.00101 * 354.77876 * 14 5 4 17 17 C 1.36447 * 127.14937 * 330.26357 * 16 14 5 18 18 O 1.33965 * 108.54305 * 179.83346 * 17 16 14 19 19 C 1.34328 * 110.89710 * 0.44582 * 18 17 16 20 20 S 1.76203 * 125.51345 * 179.74604 * 19 18 17 21 21 C 1.81408 * 103.00005 * 359.97438 * 20 19 18 22 22 C 1.35126 * 108.97150 * 359.72982 * 19 18 17 23 23 H 1.09001 * 109.47594 * 59.99570 * 1 2 3 24 24 H 1.09006 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47233 * 299.98663 * 1 2 3 26 26 H 1.09008 * 109.47031 * 60.00825 * 3 2 1 27 27 H 1.08994 * 109.47914 * 300.00478 * 3 2 1 28 28 H 1.08998 * 109.47362 * 305.00501 * 4 3 2 29 29 H 1.09000 * 109.47056 * 185.00523 * 4 3 2 30 30 H 0.96997 * 120.00157 * 185.00969 * 9 8 6 31 31 H 1.07995 * 125.72661 * 359.96032 * 17 16 14 32 32 H 1.08995 * 109.46875 * 179.97438 * 21 20 19 33 33 H 1.08992 * 109.47147 * 300.00177 * 21 20 19 34 34 H 1.09001 * 109.46636 * 59.99856 * 21 20 19 35 35 H 1.07992 * 127.05817 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 3.9504 -0.7981 -1.3881 7 1 4.3436 -1.4261 -0.6023 8 6 3.4187 -1.3727 -2.5363 9 7 2.8397 -0.6166 -3.4418 10 14 3.5272 -3.2198 -2.7926 11 1 2.3266 -3.8717 -2.2100 12 1 3.5942 -3.5148 -4.2464 13 1 4.7466 -3.7415 -2.1248 14 6 4.4053 1.3351 -2.2717 15 8 4.8550 0.8186 -3.2772 16 6 4.3249 2.8023 -2.1703 17 6 3.4089 3.5308 -1.4690 18 8 3.6841 4.8317 -1.6319 19 6 4.7518 4.9993 -2.4296 20 16 5.4417 6.5496 -2.9041 21 6 4.3689 7.7477 -2.0648 22 6 5.2114 3.7865 -2.8090 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8901 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8898 28 1 3.8514 0.5682 0.8408 29 1 3.9784 2.1765 0.0890 30 1 2.4048 -1.0235 -4.2074 31 1 2.5992 3.1265 -0.8796 32 1 4.7076 8.7589 -2.2901 33 1 3.3432 7.6220 -2.4112 34 1 4.4117 7.5819 -0.9883 35 1 6.0566 3.5820 -3.4493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601623730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:09 Heat of formation + Delta-G solvation = -53.506762 kcal Electronic energy + Delta-G solvation = -20993.437112 eV Core-core repulsion = 17699.506216 eV Total energy + Delta-G solvation = -3293.930896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.43312 -40.15046 -38.46585 -36.02058 -34.40411 -33.35210 -31.14390 -30.34561 -29.77818 -27.26072 -26.80131 -24.34280 -23.33827 -22.75264 -21.19266 -19.51928 -18.32139 -17.90805 -17.33794 -17.05843 -16.79112 -16.52568 -16.07077 -15.83696 -15.76400 -15.25247 -14.83789 -14.42605 -14.39238 -14.09522 -13.80425 -13.44139 -13.19560 -12.91185 -12.88638 -12.78457 -12.64921 -12.47062 -12.13814 -11.83188 -11.72340 -11.10389 -10.77589 -10.45989 -10.39047 -10.10593 -9.07645 -8.40380 -8.10254 -5.91080 0.10432 0.45061 1.01404 1.02821 1.40825 1.46071 1.52803 2.31922 2.44287 2.78924 3.05355 3.20692 3.35888 3.84153 3.92594 4.23279 4.28215 4.28666 4.32495 4.40695 4.49358 4.54237 4.58852 4.63924 4.69119 4.82216 4.88921 4.90164 5.04196 5.20015 5.54382 5.78833 6.26899 6.51009 7.10298 7.24298 7.67456 8.37105 8.99041 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.005343 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.789150 B = 5239.326801 C = 6150.255370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.089 3.911 5 N -0.453 5.453 6 C -0.325 4.325 7 H 0.077 0.923 8 C 0.016 3.984 9 N -0.871 5.871 10 Si 0.971 3.029 11 H -0.265 1.265 12 H -0.295 1.295 13 H -0.265 1.265 14 C 0.525 3.475 15 O -0.584 6.584 16 C -0.209 4.209 17 C -0.006 4.006 18 O -0.167 6.167 19 C -0.031 4.031 20 S -0.028 6.028 21 C -0.144 4.144 22 C -0.166 4.166 23 H 0.026 0.974 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.033 0.967 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.254 0.746 31 H 0.238 0.762 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 15.362 8.805 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C -0.030 4.030 4 C -0.035 4.035 5 N -0.174 5.174 6 C -0.453 4.453 7 H 0.094 0.906 8 C -0.189 4.189 9 N -0.507 5.507 10 Si 0.797 3.203 11 H -0.191 1.191 12 H -0.222 1.222 13 H -0.190 1.190 14 C 0.315 3.685 15 O -0.466 6.466 16 C -0.215 4.215 17 C -0.078 4.078 18 O -0.065 6.065 19 C -0.189 4.189 20 S 0.208 5.792 21 C -0.312 4.312 22 C -0.195 4.195 23 H 0.045 0.955 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.254 0.746 32 H 0.158 0.842 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.982 15.496 7.573 17.361 hybrid contribution -1.254 -1.527 -0.009 1.976 sum -3.236 13.969 7.565 16.212 Atomic orbital electron populations 1.22790 0.81177 1.02770 0.99954 1.88129 1.19854 1.27501 1.95165 1.23148 0.94381 0.85623 0.99880 1.22098 0.93108 0.99556 0.88713 1.43236 1.56363 1.05502 1.12323 1.19093 1.40360 0.81132 1.04705 0.90560 1.26049 0.94539 1.02527 0.95774 1.69998 1.33271 1.36560 1.10896 0.85288 0.78973 0.79505 0.76582 1.19071 1.22194 1.18987 1.17589 0.81134 0.84596 0.85214 1.90558 1.48939 1.75053 1.32041 1.21892 1.00554 0.94835 1.04261 1.25412 1.01062 0.79143 1.02215 1.83917 1.40348 1.27362 1.54840 1.24300 0.93326 1.00472 1.00822 1.85732 1.40167 0.89409 1.63904 1.23777 1.02361 1.00762 1.04325 1.22492 1.02872 0.89544 1.04561 0.95507 0.90063 0.91744 0.89019 0.94865 0.90126 0.88073 0.93708 0.74608 0.84167 0.89076 0.88569 0.83348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.14 16 2 O -0.39 -15.44 9.82 -148.98 -1.46 -16.90 16 3 C 0.05 1.58 5.06 71.98 0.36 1.94 16 4 C 0.09 3.36 5.33 86.38 0.46 3.82 16 5 N -0.45 -23.45 2.53 -639.39 -1.62 -25.06 16 6 C -0.32 -18.51 8.32 84.07 0.70 -17.81 16 7 H 0.08 4.23 7.84 -2.91 -0.02 4.20 16 8 C 0.02 0.94 4.78 84.93 0.41 1.35 16 9 N -0.87 -54.72 11.21 21.67 0.24 -54.47 16 10 Si 0.97 47.02 29.56 68.60 2.03 49.04 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 14 C 0.52 29.14 6.73 86.62 0.58 29.72 16 15 O -0.58 -38.50 14.86 -4.20 -0.06 -38.56 16 16 C -0.21 -9.34 5.62 -19.00 -0.11 -9.45 16 17 C -0.01 -0.22 9.61 67.40 0.65 0.43 16 18 O -0.17 -5.21 10.19 0.49 0.00 -5.20 16 19 C -0.03 -0.99 7.32 67.10 0.49 -0.50 16 20 S -0.03 -0.65 22.74 -56.49 -1.28 -1.93 16 21 C -0.14 -1.98 10.45 113.37 1.18 -0.79 16 22 C -0.17 -6.70 11.08 23.87 0.26 -6.43 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.03 1.20 6.22 -2.39 -0.01 1.19 16 28 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 29 H 0.10 3.28 5.33 -2.39 -0.01 3.26 16 30 H 0.25 15.46 8.32 -92.71 -0.77 14.69 16 31 H 0.24 7.03 3.65 -2.91 -0.01 7.02 16 32 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.15 6.02 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -81.24 312.04 5.20 -76.04 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.11 Total: 12.62 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.24 Total: 4.43 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -1.37 Total: -79.53 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.52 Total: -60.66 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -1.28 Total: -1.93 kcal Total: -81.24 5.20 -76.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.534 kcal (2) G-P(sol) polarization free energy of solvation -81.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds