Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 117.00045 * 2 1 4 4 C 1.38748 * 120.05188 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94118 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05557 * 359.74889 * 5 4 3 7 7 C 1.38239 * 120.10951 * 0.50559 * 6 5 4 8 8 S 1.76197 * 119.97228 * 179.76999 * 7 6 5 9 9 O 1.42101 * 106.40487 * 156.18428 * 8 7 6 10 10 O 1.42106 * 106.40322 * 23.26220 * 8 7 6 11 11 N 1.65605 * 107.21776 * 269.72322 * 8 7 6 12 12 C 1.46497 * 120.00032 * 65.00008 * 11 8 7 13 13 H 1.09007 * 109.47078 * 24.99629 * 12 11 8 14 14 C 1.53000 * 109.47021 * 265.00209 * 12 11 8 15 15 C 1.50694 * 109.47115 * 144.99990 * 12 11 8 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38167 * 120.05883 * 359.49141 * 7 6 5 24 24 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46740 * 299.99853 * 1 2 3 26 26 H 1.08997 * 109.47105 * 60.00092 * 1 2 3 27 27 H 1.08002 * 120.03201 * 359.95243 * 4 3 2 28 28 H 1.07998 * 119.97320 * 180.02562 * 5 4 3 29 29 H 1.07994 * 119.94576 * 180.27463 * 6 5 4 30 30 H 0.96997 * 119.99799 * 244.99417 * 11 8 7 31 31 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 32 32 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 33 33 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 34 34 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 35 35 H 1.07993 * 120.03090 * 180.23373 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3020 3.6758 0.0063 7 6 4.0560 2.5171 0.0005 8 16 5.8154 2.6119 0.0011 9 8 6.2832 1.3854 0.5453 10 8 6.1487 3.8813 0.5459 11 7 6.3054 2.6387 -1.5806 12 6 5.9489 3.7712 -2.4388 13 1 5.7769 4.6539 -1.8228 14 6 4.6760 3.4384 -3.2197 15 6 7.0737 4.0435 -3.4040 16 1 7.9652 3.4343 -3.3803 17 6 6.9652 5.0713 -4.3168 18 7 5.8798 5.8135 -4.3454 19 14 8.3597 5.4093 -5.5128 20 1 9.3071 6.3794 -4.9072 21 1 9.0731 4.1418 -5.8124 22 1 7.8075 5.9755 -6.7697 23 6 3.4312 1.2848 0.0000 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 0.0002 28 1 1.3340 4.5113 0.0019 29 1 3.7923 4.6380 0.0112 30 1 6.8285 1.9045 -1.9387 31 1 4.8479 2.5557 -3.8357 32 1 3.8625 3.2414 -2.5215 33 1 4.4105 4.2812 -3.8579 34 1 5.8037 6.5367 -4.9873 35 1 4.0207 0.3800 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619480246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = -86.674934 kcal Electronic energy + Delta-G solvation = -20777.641821 eV Core-core repulsion = 17482.272645 eV Total energy + Delta-G solvation = -3295.369175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13046 -37.44719 -36.69173 -35.43768 -35.29112 -32.18877 -31.30775 -30.25599 -28.29691 -27.44423 -25.24628 -23.05478 -22.42236 -20.94685 -19.24751 -18.26238 -17.36000 -16.39813 -16.21038 -16.03944 -15.87459 -15.68968 -15.17422 -14.62823 -13.90743 -13.66281 -13.54531 -12.94321 -12.67390 -12.62267 -12.19191 -11.97613 -11.73801 -11.55017 -11.47700 -11.41779 -11.24336 -11.09362 -10.97178 -10.66074 -10.45733 -10.32475 -10.09692 -9.33122 -9.19964 -8.63100 -8.32884 -8.24470 -6.13262 -4.19998 0.79525 1.08952 1.41637 3.13223 3.27140 3.33582 3.36279 3.46565 3.82161 4.30308 4.37072 4.65936 4.81163 4.88040 4.93956 4.97154 5.19544 5.23338 5.28159 5.38890 5.55682 5.87801 6.12640 6.24992 6.30706 6.34308 6.58353 6.76903 6.84124 7.00372 7.27895 7.56509 7.66332 7.85766 8.00285 8.26264 8.82584 9.45817 10.93000 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.005197 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.332427 B = 5386.220874 C = 5916.468473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.099 3.901 4 C -0.160 4.160 5 C -0.101 4.101 6 C -0.047 4.047 7 C -0.628 4.628 8 S 2.689 3.311 9 O -0.979 6.979 10 O -0.958 6.958 11 N -1.097 6.097 12 C 0.268 3.732 13 H 0.052 0.948 14 C -0.160 4.160 15 C -0.520 4.520 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.286 1.286 23 C -0.050 4.050 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.410 0.590 31 H 0.033 0.967 32 H 0.014 0.986 33 H 0.093 0.907 34 H 0.264 0.736 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 -7.185 6.706 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.054 3.946 4 C -0.179 4.179 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.712 4.712 8 S 2.777 3.223 9 O -0.969 6.969 10 O -0.948 6.948 11 N -0.858 5.858 12 C 0.164 3.836 13 H 0.070 0.930 14 C -0.219 4.219 15 C -0.560 4.560 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.527 5.527 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.212 1.212 23 C -0.070 4.070 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.151 0.849 29 H 0.162 0.838 30 H 0.244 0.756 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.956 -7.031 7.421 14.984 hybrid contribution -0.271 0.043 -1.260 1.289 sum -11.226 -6.988 6.161 14.588 Atomic orbital electron populations 1.23053 0.78564 1.03943 1.01273 1.86086 1.21215 1.26616 1.89106 1.19000 0.92360 0.84319 0.98922 1.21458 1.00032 0.92582 1.03815 1.21071 0.94670 0.97234 0.99051 1.20935 0.94090 0.97607 0.94012 1.31182 1.28286 0.98208 1.13543 1.01948 0.73401 0.73413 0.73572 1.93527 1.79563 1.45967 1.77872 1.93578 1.81568 1.42348 1.77278 1.55516 1.67423 1.32856 1.30044 1.18639 0.93811 0.82114 0.89084 0.93049 1.22309 0.96758 1.02377 1.00504 1.21225 1.02088 1.15965 1.16728 0.91671 1.24909 0.96099 0.95588 0.97276 1.69861 1.26598 1.19605 1.36663 0.86437 0.81898 0.78594 0.80122 1.20491 1.19819 1.21184 1.20078 0.91803 0.97154 0.97967 0.88213 0.92752 0.92614 0.85122 0.84884 0.83774 0.75561 0.94732 0.96662 0.88808 0.92610 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -4.07 10.50 -19.44 -0.20 -4.27 16 3 C 0.10 1.43 6.69 -39.22 -0.26 1.16 16 4 C -0.16 -2.01 9.04 -39.43 -0.36 -2.37 16 5 C -0.10 -1.36 10.04 -39.60 -0.40 -1.76 16 6 C -0.05 -0.76 8.60 -39.56 -0.34 -1.10 16 7 C -0.63 -10.75 5.05 -39.61 -0.20 -10.95 16 8 S 2.69 51.47 5.72 -107.50 -0.61 50.85 16 9 O -0.98 -19.52 17.28 -57.17 -0.99 -20.51 16 10 O -0.96 -20.94 16.61 -57.17 -0.95 -21.89 16 11 N -1.10 -22.12 5.46 -5.88 -0.03 -22.16 16 12 C 0.27 6.35 2.89 -69.09 -0.20 6.15 16 13 H 0.05 1.32 7.50 -51.92 -0.39 0.93 16 14 C -0.16 -3.60 9.29 37.16 0.35 -3.25 16 15 C -0.52 -13.59 8.76 -34.44 -0.30 -13.89 16 16 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.05 -0.80 9.46 -39.43 -0.37 -1.18 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.14 2.33 7.61 -52.49 -0.40 1.93 16 30 H 0.41 7.51 8.83 -34.47 -0.30 7.20 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.01 0.29 6.18 -51.93 -0.32 -0.03 16 33 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.15 2.20 7.62 -52.49 -0.40 1.80 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -31.70 308.58 -7.79 -39.49 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.07 Total: 6.11 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -1.19 Total: -24.38 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.60 Total: -45.57 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -2.14 Total: -46.67 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 51.47 SS G_CDS: -0.61 Total: 50.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.70 -7.79 -39.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.182 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds