Wall clock time and date at job start Tue Mar 31 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99730 * 2 1 4 4 C 1.38755 * 120.05839 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94118 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05983 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11231 * 359.97438 * 6 5 4 8 8 S 1.76198 * 119.97354 * 180.02562 * 7 6 5 9 9 O 1.42099 * 106.40118 * 23.54536 * 8 7 6 10 10 O 1.42109 * 106.39824 * 156.46216 * 8 7 6 11 11 N 1.65600 * 107.21694 * 270.00227 * 8 7 6 12 12 C 1.46494 * 120.00179 * 65.00181 * 11 8 7 13 13 H 1.08997 * 109.46794 * 335.00174 * 12 11 8 14 14 C 1.52998 * 109.47023 * 94.99760 * 12 11 8 15 15 C 1.50692 * 109.47147 * 214.99669 * 12 11 8 16 16 H 1.08003 * 120.00058 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99899 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00255 * 0.02562 * 17 15 12 19 19 Si 1.86808 * 119.99810 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47325 * 60.00038 * 19 17 15 21 21 H 1.48502 * 109.46594 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46975 * 299.99637 * 19 17 15 23 23 C 1.38166 * 120.05257 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.47521 * 300.00502 * 1 2 3 25 25 H 1.09007 * 109.47162 * 60.00566 * 1 2 3 26 26 H 1.08998 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.02466 * 359.95817 * 4 3 2 28 28 H 1.08001 * 119.97105 * 180.02562 * 5 4 3 29 29 H 1.08000 * 119.94758 * 180.02562 * 6 5 4 30 30 H 0.97009 * 119.99636 * 244.99636 * 11 8 7 31 31 H 1.09001 * 109.47355 * 59.99891 * 14 12 11 32 32 H 1.09000 * 109.47139 * 180.02562 * 14 12 11 33 33 H 1.08996 * 109.47447 * 300.00078 * 14 12 11 34 34 H 0.96997 * 120.00144 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.02702 * 180.26943 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0005 7 6 4.0560 2.5171 0.0000 8 16 5.8154 2.6119 0.0000 9 8 6.1488 3.8811 0.5451 10 8 6.2833 1.3852 0.5439 11 7 6.3048 2.6390 -1.5818 12 6 5.9481 3.7717 -2.4396 13 1 5.0453 4.2473 -2.0565 14 6 7.0940 4.7854 -2.4485 15 6 5.7007 3.2808 -3.8427 16 1 5.7990 2.2301 -4.0724 17 6 5.3479 4.1730 -4.8330 18 7 5.2278 5.4524 -4.5532 19 14 5.0406 3.5644 -6.5722 20 1 3.9285 2.5804 -6.5631 21 1 4.6791 4.7127 -7.4417 22 1 6.2705 2.9166 -7.0945 23 6 3.4311 1.2848 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 0.2128 2.3203 0.0003 28 1 1.3340 4.5113 0.0019 29 1 3.7922 4.6380 0.0014 30 1 6.8278 1.9049 -1.9403 31 1 7.9969 4.3098 -2.8315 32 1 6.8284 5.6284 -3.0864 33 1 7.2730 5.1405 -1.4337 34 1 4.9800 6.0801 -5.2500 35 1 4.0206 0.3799 0.0034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:28 Heat of formation + Delta-G solvation = -110.313896 kcal Electronic energy + Delta-G solvation = -20788.933192 eV Core-core repulsion = 17492.538954 eV Total energy + Delta-G solvation = -3296.394238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14510 -38.49635 -38.28689 -37.23520 -36.91195 -34.10907 -32.42832 -31.32354 -30.11735 -28.19959 -27.21065 -24.23511 -23.54175 -22.80526 -20.61781 -19.61033 -19.00229 -17.91785 -17.47283 -17.24213 -17.08810 -16.93244 -16.70581 -16.25209 -15.37741 -14.91050 -14.65020 -14.50795 -14.06466 -13.92515 -13.62121 -13.49003 -13.26978 -13.18114 -12.99446 -12.88060 -12.80217 -12.40112 -12.34752 -12.22489 -12.15728 -11.98808 -11.76774 -11.08872 -10.58211 -10.44557 -10.09741 -9.37534 -8.12028 -6.26044 -0.56433 -0.23399 0.28258 1.46509 1.47460 1.54653 2.07569 2.25543 2.42734 2.50309 2.82567 3.17550 3.44140 3.68722 3.89516 4.06716 4.16209 4.39191 4.39851 4.41174 4.53058 4.70501 4.78320 4.92305 4.98382 5.11676 5.13003 5.18469 5.20824 5.51810 5.60868 5.76681 6.04261 6.10783 6.31895 6.42311 6.83876 7.43182 8.93045 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014186 B = 0.006701 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.367607 B = 4177.764578 C = 5260.851103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.332 6.332 3 C 0.098 3.902 4 C -0.149 4.149 5 C -0.099 4.099 6 C -0.073 4.073 7 C -0.639 4.639 8 S 2.707 3.293 9 O -0.985 6.985 10 O -0.990 6.990 11 N -1.099 6.099 12 C 0.277 3.723 13 H 0.029 0.971 14 C -0.153 4.153 15 C -0.541 4.541 16 H 0.066 0.934 17 C 0.021 3.979 18 N -0.912 5.912 19 Si 0.958 3.042 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.074 4.074 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.137 0.863 30 H 0.417 0.583 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -6.460 7.311 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.247 6.247 3 C 0.052 3.948 4 C -0.167 4.167 5 C -0.117 4.117 6 C -0.092 4.092 7 C -0.727 4.727 8 S 2.798 3.202 9 O -0.975 6.975 10 O -0.980 6.980 11 N -0.859 5.859 12 C 0.172 3.828 13 H 0.047 0.953 14 C -0.213 4.213 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.094 4.094 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.190 0.810 28 H 0.184 0.816 29 H 0.155 0.845 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.341 -6.295 8.039 14.533 hybrid contribution -0.593 -0.266 -1.429 1.570 sum -10.934 -6.562 6.611 14.363 Atomic orbital electron populations 1.23456 0.75922 1.06045 1.02636 1.86074 1.23947 1.25884 1.88753 1.19099 0.91981 0.85664 0.98040 1.21905 1.02023 0.91391 1.01430 1.21468 0.93703 0.99116 0.97418 1.21097 0.95738 0.96912 0.95496 1.30689 1.26657 0.99323 1.16075 1.01181 0.73903 0.72516 0.72647 1.93527 1.82755 1.43472 1.77719 1.93503 1.80505 1.46174 1.77865 1.55374 1.68339 1.32352 1.29873 1.18310 0.93066 0.82139 0.89285 0.95286 1.22152 0.98640 1.01201 0.99260 1.21567 1.47733 0.94700 0.94003 0.91578 1.25619 0.94860 0.94969 1.02472 1.69977 1.47787 1.02537 1.34718 0.85622 0.78718 0.77736 0.79606 1.19879 1.20940 1.19659 1.20188 0.93295 0.96694 0.99191 0.90924 0.91547 0.85985 0.81025 0.81611 0.84512 0.74743 0.94390 0.90867 0.95068 0.92499 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -8.36 10.50 -92.40 -0.97 -9.33 16 3 C 0.10 2.83 6.69 22.51 0.15 2.98 16 4 C -0.15 -3.57 9.04 22.36 0.20 -3.36 16 5 C -0.10 -2.61 10.04 22.25 0.22 -2.38 16 6 C -0.07 -2.45 8.90 22.28 0.20 -2.26 16 7 C -0.64 -23.10 5.81 22.25 0.13 -22.97 16 8 S 2.71 105.74 5.65 -56.49 -0.32 105.42 16 9 O -0.98 -42.74 16.54 -128.00 -2.12 -44.86 16 10 O -0.99 -40.11 17.28 -128.00 -2.21 -42.32 16 11 N -1.10 -45.02 5.46 -172.55 -0.94 -45.97 16 12 C 0.28 13.34 2.76 44.24 0.12 13.46 16 13 H 0.03 1.48 7.23 -2.39 -0.02 1.46 16 14 C -0.15 -7.39 9.29 71.98 0.67 -6.72 16 15 C -0.54 -27.76 8.76 25.60 0.22 -27.54 16 16 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 17 C 0.02 1.11 5.30 84.66 0.45 1.56 16 18 N -0.91 -49.24 11.32 21.45 0.24 -49.00 16 19 Si 0.96 41.21 29.54 68.60 2.03 43.24 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.07 -2.48 9.46 22.37 0.21 -2.27 16 24 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 25 H 0.07 0.82 7.66 -2.38 -0.02 0.80 16 26 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.17 2.61 6.30 -2.91 -0.02 2.60 16 28 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.14 4.67 7.61 -2.91 -0.02 4.65 16 30 H 0.42 15.48 8.83 -96.74 -0.85 14.62 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 33 H 0.03 1.42 7.64 -2.39 -0.02 1.40 16 34 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 35 H 0.14 4.68 7.61 -2.91 -0.02 4.66 16 Total: -1.00 -66.59 310.55 -0.34 -66.93 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.26 Total: 24.08 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 3.69 Total: -48.19 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -0.70 Total: -94.96 kcal Atomic # 8 Polarization: -91.21 SS G_CDS: -5.30 Total: -96.51 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 105.74 SS G_CDS: -0.32 Total: 105.42 kcal Total: -66.59 -0.34 -66.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.383 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds