Wall clock time and date at job start Tue Mar 31 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99681 * 2 1 4 4 H 1.48503 * 109.47062 * 269.99903 * 3 2 1 5 5 H 1.48499 * 109.47233 * 29.99552 * 3 2 1 6 6 H 1.48498 * 109.47093 * 149.99684 * 3 2 1 7 7 C 1.38697 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99881 * 0.02562 * 7 2 1 9 9 O 1.34814 * 119.99907 * 179.97438 * 7 2 1 10 10 C 1.35519 * 117.00155 * 185.44842 * 9 7 2 11 11 C 1.38835 * 120.16170 * 5.74909 * 10 9 7 12 12 C 1.38026 * 120.07256 * 180.32346 * 11 10 9 13 13 C 1.38573 * 120.40667 * 359.67476 * 12 11 10 14 14 C 1.37831 * 120.32542 * 0.02562 * 13 12 11 15 15 C 1.39683 * 119.91554 * 0.02562 * 14 13 12 16 16 C 1.47488 * 120.19584 * 180.02562 * 15 14 13 17 17 O 1.21596 * 119.99984 * 179.97438 * 16 15 14 18 18 N 1.34780 * 120.00249 * 0.27826 * 16 15 14 19 19 C 1.39345 * 119.99862 * 174.52241 * 18 16 15 20 20 C 1.39416 * 120.14810 * 174.83085 * 19 18 16 21 21 C 1.38608 * 117.91008 * 179.73783 * 20 19 18 22 22 C 1.38787 * 118.03241 * 0.52641 * 21 20 19 23 23 N 1.31823 * 120.00259 * 359.73135 * 22 21 20 24 24 N 1.28354 * 122.27795 * 359.97438 * 23 22 21 25 25 H 0.97005 * 120.00366 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.96235 * 0.02562 * 11 10 9 27 27 H 1.08002 * 119.79488 * 179.69906 * 12 11 10 28 28 H 1.07995 * 119.83773 * 180.02562 * 13 12 11 29 29 H 1.07997 * 120.03582 * 180.02562 * 14 13 12 30 30 H 0.97000 * 119.99361 * 354.51513 * 18 16 15 31 31 H 1.08004 * 121.04579 * 359.97438 * 20 19 18 32 32 H 1.08004 * 120.98445 * 180.26011 * 21 20 19 33 33 H 1.07997 * 119.99443 * 179.74434 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 1.4687 -2.1364 0.0005 9 8 3.3568 -1.2011 0.0000 10 6 3.9721 -2.4031 -0.1141 11 6 3.2246 -3.5504 -0.3432 12 6 3.8526 -4.7747 -0.4524 13 6 5.2307 -4.8684 -0.3415 14 6 5.9895 -3.7393 -0.1201 15 6 5.3679 -2.4936 -0.0063 16 6 6.1739 -1.2812 0.2300 17 8 5.6292 -0.1985 0.3280 18 7 7.5148 -1.3725 0.3311 19 6 8.2856 -0.2167 0.4399 20 6 9.6603 -0.3093 0.6527 21 6 10.3829 0.8696 0.7481 22 6 9.6926 2.0686 0.6373 23 7 8.3890 2.0630 0.4417 24 7 7.7148 0.9749 0.3467 25 1 -0.4851 0.8401 0.0004 26 1 2.1502 -3.4855 -0.4313 27 1 3.2663 -5.6650 -0.6259 28 1 5.7125 -5.8310 -0.4288 29 1 7.0632 -3.8177 -0.0348 30 1 7.9432 -2.2428 0.3283 31 1 10.1475 -1.2695 0.7366 32 1 11.4509 0.8558 0.9084 33 1 10.2236 3.0061 0.7110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736024248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:47 Heat of formation + Delta-G solvation = 48.250302 kcal Electronic energy + Delta-G solvation = -21448.342120 eV Core-core repulsion = 18055.672542 eV Total energy + Delta-G solvation = -3392.669578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14487 -39.77412 -38.36873 -36.60895 -35.01193 -33.08735 -32.48737 -31.57372 -30.01908 -29.27326 -25.48675 -24.91141 -24.45524 -22.94645 -21.40879 -20.43760 -18.52079 -18.00351 -17.48228 -16.98118 -16.73356 -16.10747 -15.39542 -14.92916 -14.45684 -14.37456 -14.28354 -13.94142 -13.73023 -13.51427 -13.27208 -12.99643 -12.39989 -12.17488 -11.55621 -11.40675 -11.16420 -11.11173 -10.89667 -10.71092 -10.31585 -9.99501 -9.74354 -9.53064 -9.02193 -8.89441 -8.64123 -8.45977 -7.55140 -6.49738 -4.15227 0.78449 0.95561 1.53089 2.11714 2.87984 3.33041 3.37475 3.43823 3.75410 3.78919 4.20332 4.39239 4.44546 4.51197 4.56157 4.65185 4.69951 4.96106 5.05784 5.15141 5.27795 5.52816 5.58531 5.73138 5.89842 5.94706 5.97335 6.28562 6.44955 6.56440 6.73365 6.92234 7.07826 7.40495 7.46233 7.66358 7.90667 8.59408 8.84895 8.94895 9.45827 10.54345 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.006465 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.970394 B = 4329.640807 C = 6279.086131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.229 1.229 7 C -0.396 4.396 8 H 0.109 0.891 9 O -0.161 6.161 10 C 0.201 3.799 11 C -0.223 4.223 12 C -0.049 4.049 13 C -0.220 4.220 14 C -0.041 4.041 15 C -0.229 4.229 16 C 0.545 3.455 17 O -0.444 6.444 18 N -0.659 5.659 19 C 0.312 3.688 20 C -0.162 4.162 21 C -0.092 4.092 22 C -0.006 4.006 23 N -0.212 5.212 24 N -0.231 5.231 25 H 0.283 0.717 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.413 0.587 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.873 -5.664 0.850 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.151 1.151 7 C -0.471 4.471 8 H 0.126 0.874 9 O -0.061 6.061 10 C 0.142 3.858 11 C -0.242 4.242 12 C -0.067 4.067 13 C -0.239 4.239 14 C -0.060 4.060 15 C -0.234 4.234 16 C 0.335 3.665 17 O -0.311 6.311 18 N -0.308 5.308 19 C 0.074 3.926 20 C -0.195 4.195 21 C -0.121 4.121 22 C -0.173 4.173 23 N -0.054 5.054 24 N -0.081 5.081 25 H 0.093 0.907 26 H 0.157 0.843 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.251 0.749 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 17.759 -3.664 0.715 18.147 hybrid contribution 1.767 -0.836 0.142 1.960 sum 19.526 -4.500 0.857 20.056 Atomic orbital electron populations 1.69634 1.05882 1.29162 1.45326 1.24514 0.94982 0.99456 0.94272 0.86302 0.81967 0.80189 0.79916 1.19858 1.21067 1.15080 1.20925 0.76942 0.96817 1.52421 0.87364 1.83795 1.22311 1.24950 1.75014 1.18983 0.89997 0.86022 0.90748 1.21299 1.01483 0.91961 1.09462 1.20988 0.94390 0.96670 0.94691 1.20525 0.94024 0.97598 1.11798 1.20730 0.97956 0.91308 0.95996 1.18639 0.91056 0.92616 1.21117 1.18525 0.80252 0.90093 0.77616 1.91020 1.69319 1.28009 1.42739 1.43709 1.07645 1.06413 1.73069 1.20341 0.89090 0.89786 0.93342 1.21864 0.92829 1.00905 1.03896 1.22191 1.01684 0.92233 0.96011 1.24234 0.93313 0.99378 1.00407 1.73144 1.06568 1.19545 1.06100 1.73792 1.28312 0.93291 1.12697 0.90692 0.84256 0.86692 0.86869 0.86960 0.74936 0.83361 0.83262 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.20 13.96 55.48 0.77 -24.42 16 2 C 0.07 2.15 5.49 -17.52 -0.10 2.05 16 3 Si 0.89 23.64 28.62 -169.99 -4.86 18.77 16 4 H -0.27 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.23 -6.49 6.92 56.52 0.39 -6.10 16 7 C -0.40 -11.31 9.90 30.90 0.31 -11.00 16 8 H 0.11 3.05 5.53 -52.49 -0.29 2.76 16 9 O -0.16 -4.43 6.67 -21.05 -0.14 -4.57 16 10 C 0.20 4.67 6.66 -38.59 -0.26 4.41 16 11 C -0.22 -4.58 9.12 -39.44 -0.36 -4.94 16 12 C -0.05 -0.80 10.03 -39.54 -0.40 -1.20 16 13 C -0.22 -3.22 10.03 -39.61 -0.40 -3.62 16 14 C -0.04 -0.62 9.53 -39.19 -0.37 -0.99 16 15 C -0.23 -4.53 5.89 -104.82 -0.62 -5.15 16 16 C 0.55 11.17 7.72 -12.49 -0.10 11.07 16 17 O -0.44 -11.42 13.30 -16.57 -0.22 -11.64 16 18 N -0.66 -9.93 5.34 -12.27 -0.07 -10.00 16 19 C 0.31 4.84 7.49 -154.53 -1.16 3.68 16 20 C -0.16 -1.65 10.07 -39.01 -0.39 -2.04 16 21 C -0.09 -0.81 10.20 -39.24 -0.40 -1.21 16 22 C -0.01 -0.07 11.31 -17.35 -0.20 -0.27 16 23 N -0.21 -3.66 11.49 30.57 0.35 -3.31 16 24 N -0.23 -4.57 9.11 31.27 0.29 -4.28 16 25 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.14 2.98 5.71 -52.48 -0.30 2.68 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.11 1.17 6.42 -52.49 -0.34 0.83 16 30 H 0.41 4.22 6.76 -40.82 -0.28 3.95 16 31 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 32 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -36.49 296.08 -6.32 -42.80 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.46 Total: 1.39 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -4.43 Total: -9.20 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 1.35 Total: -42.01 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.36 Total: -16.21 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.86 Total: 18.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.49 -6.32 -42.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736024248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.052 kcal (2) G-P(sol) polarization free energy of solvation -36.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds