Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00120 * 2 1 4 4 C 1.53005 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47178 * 64.99751 * 4 3 2 6 6 C 1.46496 * 120.00280 * 262.34084 * 5 4 3 7 7 C 1.50702 * 109.47106 * 270.00125 * 6 5 4 8 8 H 1.07990 * 120.00199 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99699 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00015 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99937 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46920 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46954 * 120.00266 * 11 9 7 14 14 H 1.48499 * 109.47130 * 239.99842 * 11 9 7 15 15 C 1.34783 * 119.99581 * 82.34566 * 5 4 3 16 16 O 1.21709 * 119.99806 * 182.17892 * 15 5 4 17 17 C 1.46541 * 120.00369 * 2.17671 * 15 5 4 18 18 C 1.36739 * 125.42821 * 172.23363 * 17 15 5 19 19 C 1.37728 * 113.25659 * 180.02562 * 18 17 15 20 20 O 1.36214 * 122.49832 * 180.02562 * 19 18 17 21 21 C 1.34082 * 114.99957 * 359.97438 * 19 18 17 22 22 S 1.70597 * 110.97591 * 0.27291 * 21 19 18 23 23 H 1.08994 * 109.46743 * 300.00305 * 1 2 3 24 24 H 1.09002 * 109.46542 * 60.00011 * 1 2 3 25 25 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47798 * 59.99896 * 3 2 1 27 27 H 1.09005 * 109.47321 * 299.99582 * 3 2 1 28 28 H 1.08998 * 109.47036 * 304.99948 * 4 3 2 29 29 H 1.09005 * 109.46930 * 185.00453 * 4 3 2 30 30 H 1.08998 * 109.46613 * 30.00521 * 6 5 4 31 31 H 1.08999 * 109.47009 * 150.00153 * 6 5 4 32 32 H 0.97000 * 119.99730 * 180.02562 * 10 9 7 33 33 H 1.07998 * 123.37412 * 0.02562 * 18 17 15 34 34 H 0.96696 * 113.99882 * 269.99885 * 20 19 18 35 35 H 1.08004 * 124.50675 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2669 -0.8708 -1.2965 7 6 5.7195 -1.0990 -0.9666 8 1 6.3617 -0.2590 -0.7468 9 6 6.2286 -2.3801 -0.9455 10 7 5.4464 -3.4031 -1.2127 11 14 8.0291 -2.6630 -0.5359 12 1 8.6881 -1.3583 -0.2743 13 1 8.1331 -3.5206 0.6720 14 1 8.6971 -3.3353 -1.6792 15 6 4.1129 1.3140 -2.3643 16 8 4.4403 0.7919 -3.4139 17 6 3.8679 2.7577 -2.3093 18 6 4.1167 3.6430 -3.3213 19 6 3.7928 4.9423 -2.9990 20 8 3.9638 5.9765 -3.8689 21 6 3.2956 5.1131 -1.7656 22 16 3.2141 3.6286 -0.9290 23 1 -0.3632 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8515 0.5681 0.8409 29 1 3.9786 2.1764 0.0890 30 1 3.6431 -1.3904 -0.5692 31 1 4.0565 -1.2539 -2.2950 32 1 5.8045 -4.3044 -1.1975 33 1 4.5261 3.3526 -4.2775 34 1 4.8302 6.4016 -3.8090 35 1 2.9920 6.0647 -1.3546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748320770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -74.587168 kcal Electronic energy + Delta-G solvation = -20650.040572 eV Core-core repulsion = 17355.195562 eV Total energy + Delta-G solvation = -3294.845011 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53095 -38.85429 -37.55104 -35.25157 -34.77941 -32.76216 -30.10567 -29.21966 -27.21150 -26.09880 -24.75820 -22.90252 -22.68775 -20.45447 -19.01875 -17.95992 -17.18474 -16.54174 -16.45570 -16.12534 -15.53504 -15.33470 -14.95359 -14.86242 -14.23906 -13.89730 -13.55797 -13.21411 -13.15656 -12.56403 -12.23932 -12.03449 -11.94334 -11.75723 -11.28510 -11.11169 -10.96661 -10.92871 -10.56830 -10.42174 -10.13382 -9.62375 -9.53692 -9.20728 -8.79532 -8.40399 -8.24447 -7.74086 -6.01302 -4.06240 0.60129 1.51101 1.91243 2.35452 3.31527 3.38864 3.42151 3.64678 3.78316 3.91466 4.35562 4.47757 4.85247 5.04345 5.14912 5.31069 5.33770 5.35003 5.41094 5.45175 5.48818 5.51977 5.80553 5.83947 6.05854 6.13066 6.25467 7.11622 7.30883 7.45330 7.50323 7.54604 7.95025 8.24982 8.29826 8.83278 9.01046 9.58102 11.06761 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.005952 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.091532 B = 4703.099819 C = 5872.962759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.035 3.965 4 C 0.101 3.899 5 N -0.579 5.579 6 C 0.251 3.749 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.573 3.427 16 O -0.523 6.523 17 C -0.235 4.235 18 C -0.091 4.091 19 C 0.080 3.920 20 O -0.487 6.487 21 C -0.315 4.315 22 S 0.243 5.757 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.157 0.843 34 H 0.385 0.615 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 16.043 4.376 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.043 4.043 4 C -0.026 4.026 5 N -0.310 5.310 6 C 0.132 3.868 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.359 3.641 16 O -0.401 6.401 17 C -0.355 4.355 18 C -0.124 4.124 19 C 0.023 3.977 20 O -0.296 6.296 21 C -0.452 4.452 22 S 0.511 5.489 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.175 0.825 34 H 0.240 0.760 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.337 14.859 5.063 17.774 hybrid contribution 1.704 0.903 -1.051 2.197 sum -6.633 15.762 4.011 17.565 Atomic orbital electron populations 1.22727 0.81682 1.02755 0.99369 1.88075 1.19011 1.26559 1.95189 1.23375 0.94680 0.85774 1.00515 1.21839 0.91856 0.98243 0.90687 1.48083 1.63887 1.12070 1.06913 1.19400 0.95949 0.72009 0.99415 1.21489 0.95033 0.92600 1.47725 0.92420 1.24916 0.97984 0.95861 0.95218 1.69955 1.35392 0.98813 1.48883 0.86458 0.84958 0.78151 0.77929 1.19841 1.20960 1.20896 1.16897 0.78915 0.83486 0.84816 1.90816 1.47721 1.72168 1.29421 1.24915 1.12512 0.98958 0.99158 1.20857 0.99836 0.91356 1.00372 1.17039 1.03898 0.87561 0.89226 1.84927 1.39385 1.46446 1.58861 1.26156 1.10982 1.07821 1.00204 1.83720 1.58634 0.93215 1.13349 0.94447 0.94412 0.89607 0.92102 0.92814 0.87039 0.90028 0.93581 0.93704 0.92778 0.82533 0.76016 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.13 10.46 -35.23 -0.37 -6.50 16 3 C 0.04 0.49 4.80 37.16 0.18 0.67 16 4 C 0.10 1.64 5.34 -4.04 -0.02 1.62 16 5 N -0.58 -12.53 2.42 -176.65 -0.43 -12.96 16 6 C 0.25 6.64 5.14 -5.19 -0.03 6.61 16 7 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 11 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.57 12.56 7.55 -12.91 -0.10 12.46 16 16 O -0.52 -13.65 16.42 5.18 0.09 -13.57 16 17 C -0.23 -4.00 6.07 -36.78 -0.22 -4.22 16 18 C -0.09 -1.44 10.01 -40.31 -0.40 -1.85 16 19 C 0.08 1.07 6.68 -41.23 -0.28 0.79 16 20 O -0.49 -5.74 13.62 -20.42 -0.28 -6.02 16 21 C -0.31 -3.69 10.89 29.27 0.32 -3.37 16 22 S 0.24 2.95 15.43 -107.50 -1.66 1.29 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.75 6.23 -49.72 -0.31 0.44 16 28 H 0.11 1.85 8.01 -51.93 -0.42 1.43 16 29 H 0.08 1.14 4.44 -21.96 -0.10 1.04 16 30 H 0.05 1.25 7.88 -51.93 -0.41 0.84 16 31 H 0.04 1.35 7.39 -51.93 -0.38 0.96 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 34 H 0.39 2.63 9.07 45.56 0.41 3.05 16 35 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -35.22 312.66 -5.37 -40.59 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.29 Total: 0.93 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 0.14 Total: 0.56 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.31 Total: -38.83 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.56 Total: -26.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.66 Total: 1.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.22 -5.37 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748320770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.999 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds