Wall clock time and date at job start Tue Mar 31 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00120 * 2 1 4 4 C 1.53005 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47178 * 64.99751 * 4 3 2 6 6 C 1.46496 * 120.00280 * 262.34084 * 5 4 3 7 7 C 1.50702 * 109.47106 * 270.00125 * 6 5 4 8 8 H 1.07990 * 120.00199 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99699 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00015 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99937 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46920 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46954 * 120.00266 * 11 9 7 14 14 H 1.48499 * 109.47130 * 239.99842 * 11 9 7 15 15 C 1.34783 * 119.99581 * 82.34566 * 5 4 3 16 16 O 1.21709 * 119.99806 * 182.17892 * 15 5 4 17 17 C 1.46541 * 120.00369 * 2.17671 * 15 5 4 18 18 C 1.36739 * 125.42821 * 172.23363 * 17 15 5 19 19 C 1.37728 * 113.25659 * 180.02562 * 18 17 15 20 20 O 1.36214 * 122.49832 * 180.02562 * 19 18 17 21 21 C 1.34082 * 114.99957 * 359.97438 * 19 18 17 22 22 S 1.70597 * 110.97591 * 0.27291 * 21 19 18 23 23 H 1.08994 * 109.46743 * 300.00305 * 1 2 3 24 24 H 1.09002 * 109.46542 * 60.00011 * 1 2 3 25 25 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47798 * 59.99896 * 3 2 1 27 27 H 1.09005 * 109.47321 * 299.99582 * 3 2 1 28 28 H 1.08998 * 109.47036 * 304.99948 * 4 3 2 29 29 H 1.09005 * 109.46930 * 185.00453 * 4 3 2 30 30 H 1.08998 * 109.46613 * 30.00521 * 6 5 4 31 31 H 1.08999 * 109.47009 * 150.00153 * 6 5 4 32 32 H 0.97000 * 119.99730 * 180.02562 * 10 9 7 33 33 H 1.07998 * 123.37412 * 0.02562 * 18 17 15 34 34 H 0.96696 * 113.99882 * 269.99885 * 20 19 18 35 35 H 1.08004 * 124.50675 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.2669 -0.8708 -1.2965 7 6 5.7195 -1.0990 -0.9666 8 1 6.3617 -0.2590 -0.7468 9 6 6.2286 -2.3801 -0.9455 10 7 5.4464 -3.4031 -1.2127 11 14 8.0291 -2.6630 -0.5359 12 1 8.6881 -1.3583 -0.2743 13 1 8.1331 -3.5206 0.6720 14 1 8.6971 -3.3353 -1.6792 15 6 4.1129 1.3140 -2.3643 16 8 4.4403 0.7919 -3.4139 17 6 3.8679 2.7577 -2.3093 18 6 4.1167 3.6430 -3.3213 19 6 3.7928 4.9423 -2.9990 20 8 3.9638 5.9765 -3.8689 21 6 3.2956 5.1131 -1.7656 22 16 3.2141 3.6286 -0.9290 23 1 -0.3632 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8515 0.5681 0.8409 29 1 3.9786 2.1764 0.0890 30 1 3.6431 -1.3904 -0.5692 31 1 4.0565 -1.2539 -2.2950 32 1 5.8045 -4.3044 -1.1975 33 1 4.5261 3.3526 -4.2775 34 1 4.8302 6.4016 -3.8090 35 1 2.9920 6.0647 -1.3546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748320770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:00 Heat of formation + Delta-G solvation = -102.760454 kcal Electronic energy + Delta-G solvation = -20651.262258 eV Core-core repulsion = 17355.195562 eV Total energy + Delta-G solvation = -3296.066696 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01572 -39.99226 -38.79451 -36.74515 -36.03879 -34.86459 -31.67115 -30.43651 -28.98602 -27.17574 -26.28236 -24.49923 -24.09166 -21.78942 -20.26006 -19.34531 -18.63772 -18.19209 -17.73281 -17.40450 -16.90013 -16.76781 -16.42937 -16.20219 -15.78752 -15.35936 -14.70182 -14.60893 -14.38372 -14.31606 -13.63926 -13.51589 -13.32040 -13.07183 -12.93846 -12.78529 -12.58622 -12.21941 -12.12738 -12.00519 -11.73140 -11.51482 -10.95013 -10.64772 -10.59604 -10.00453 -9.50193 -9.24710 -8.20895 -6.36227 -0.56933 0.38723 0.86561 1.23757 1.37551 1.40143 1.51993 2.06305 2.21095 2.41463 2.84002 3.08678 3.32443 3.66959 3.97872 4.04042 4.11948 4.20505 4.34283 4.39714 4.53590 4.59722 4.70431 4.78410 4.88786 5.03708 5.14108 5.18953 5.25192 5.50307 5.79092 6.05562 6.27955 6.58942 6.72785 6.78182 7.18092 7.36250 8.86965 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.005952 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.091532 B = 4703.099819 C = 5872.962759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.036 3.964 4 C 0.092 3.908 5 N -0.586 5.586 6 C 0.272 3.728 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.970 3.030 12 H -0.265 1.265 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.567 3.433 16 O -0.588 6.588 17 C -0.288 4.288 18 C -0.089 4.089 19 C 0.067 3.933 20 O -0.493 6.493 21 C -0.287 4.287 22 S 0.325 5.675 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.032 0.968 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.407 0.593 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 19.159 6.704 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.042 4.042 4 C -0.033 4.033 5 N -0.315 5.315 6 C 0.151 3.849 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.794 3.206 12 H -0.190 1.190 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.356 3.644 16 O -0.471 6.471 17 C -0.408 4.408 18 C -0.124 4.124 19 C 0.010 3.990 20 O -0.305 6.305 21 C -0.424 4.424 22 S 0.593 5.407 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.265 0.735 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.615 18.018 7.445 21.315 hybrid contribution 1.699 0.053 -1.778 2.460 sum -6.916 18.071 5.667 20.162 Atomic orbital electron populations 1.22911 0.79598 1.03393 1.01100 1.88022 1.21491 1.28252 1.95563 1.23461 0.92498 0.85455 1.02777 1.22211 0.94134 0.99133 0.87820 1.47994 1.64013 1.10385 1.09109 1.18750 0.95140 0.75211 0.95777 1.21749 0.95856 0.92893 1.47953 0.92643 1.25876 1.02947 0.95480 0.94776 1.70083 1.37662 0.99380 1.49542 0.85335 0.78788 0.78429 0.78037 1.18961 1.19257 1.20832 1.17544 0.77544 0.85616 0.83740 1.90752 1.50680 1.74120 1.31568 1.24384 1.16882 0.96514 1.03059 1.20959 0.99121 0.92753 0.99542 1.16853 1.05024 0.86799 0.90276 1.84891 1.41206 1.45713 1.58712 1.26577 1.07733 1.09041 0.99090 1.83137 1.56107 0.91596 1.09869 0.91310 0.93903 0.89755 0.87191 0.92702 0.87613 0.87313 0.94979 0.98826 0.92392 0.84383 0.73543 0.78009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.56 10.46 -148.98 -1.56 -15.12 16 3 C 0.04 0.93 4.80 71.98 0.35 1.28 16 4 C 0.09 2.92 5.34 86.38 0.46 3.38 16 5 N -0.59 -26.46 2.42 -831.02 -2.01 -28.47 16 6 C 0.27 15.38 5.14 85.63 0.44 15.82 16 7 C -0.55 -32.25 9.39 25.60 0.24 -32.01 16 8 H 0.06 3.22 7.81 -2.92 -0.02 3.19 16 9 C 0.01 0.49 5.46 84.65 0.46 0.95 16 10 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 11 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.57 26.16 7.55 86.41 0.65 26.82 16 16 O -0.59 -33.31 16.42 -4.38 -0.07 -33.38 16 17 C -0.29 -9.79 6.07 24.09 0.15 -9.64 16 18 C -0.09 -2.80 10.01 21.80 0.22 -2.58 16 19 C 0.07 1.61 6.68 21.20 0.14 1.75 16 20 O -0.49 -10.21 13.62 -96.00 -1.31 -11.52 16 21 C -0.29 -5.35 10.89 66.87 0.73 -4.62 16 22 S 0.32 6.69 15.43 -56.49 -0.87 5.81 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.41 6.23 -3.79 -0.02 1.38 16 28 H 0.11 3.48 8.01 -2.39 -0.02 3.46 16 29 H 0.11 2.77 4.44 -21.44 -0.10 2.67 16 30 H 0.03 1.87 7.88 -2.39 -0.02 1.85 16 31 H -0.01 -0.42 7.39 -2.39 -0.02 -0.44 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 34 H 0.41 4.33 9.07 -74.06 -0.67 3.66 16 35 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -82.93 312.66 1.93 -81.00 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.36 Total: 8.23 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.08 Total: 2.98 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -1.73 Total: -85.52 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -2.94 Total: -60.02 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -0.87 Total: 5.81 kcal Total: -82.93 1.93 -81.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748320770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.758 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds