Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47088 * 270.00110 * 3 2 1 5 5 H 1.48501 * 109.47206 * 30.00180 * 3 2 1 6 6 H 1.48499 * 109.47126 * 150.00402 * 3 2 1 7 7 C 1.38702 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99757 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.35515 * 117.00214 * 174.97628 * 9 7 2 11 11 C 1.38832 * 120.16190 * 5.23267 * 10 9 7 12 12 C 1.38028 * 120.07216 * 180.30468 * 11 10 9 13 13 C 1.38566 * 120.40527 * 359.69353 * 12 11 10 14 14 C 1.37829 * 120.32782 * 0.02696 * 13 12 11 15 15 C 1.39674 * 119.91174 * 359.97438 * 14 13 12 16 16 C 1.47506 * 120.19275 * 179.97438 * 15 14 13 17 17 O 1.21609 * 120.00009 * 180.02562 * 16 15 14 18 18 N 1.34773 * 120.00303 * 0.02562 * 16 15 14 19 19 C 1.39905 * 120.00113 * 185.68598 * 18 16 15 20 20 C 1.39251 * 120.87089 * 205.65504 * 19 18 16 21 21 N 1.32265 * 119.01198 * 180.02562 * 20 19 18 22 22 C 1.31793 * 120.89396 * 359.97438 * 21 20 19 23 23 N 1.31799 * 121.92886 * 0.02562 * 22 21 20 24 24 C 1.32255 * 120.89372 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.96634 * 0.02583 * 11 10 9 27 27 H 1.08005 * 119.79733 * 179.72252 * 12 11 10 28 28 H 1.08008 * 119.83561 * 180.02562 * 13 12 11 29 29 H 1.07995 * 120.04105 * 180.02562 * 14 13 12 30 30 H 0.96998 * 119.99853 * 5.68391 * 18 16 15 31 31 H 1.08005 * 120.49619 * 0.04158 * 20 19 18 32 32 H 1.07998 * 119.03438 * 180.02562 * 22 21 20 33 33 H 1.08006 * 120.48966 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0086 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3346 -2.3687 -0.0016 10 6 2.0686 -3.5029 -0.1078 11 6 3.4554 -3.4395 -0.1001 12 6 4.2013 -4.5952 -0.2147 13 6 3.5746 -5.8256 -0.3317 14 6 2.1988 -5.9083 -0.3354 15 6 1.4309 -4.7473 -0.2202 16 6 -0.0419 -4.8286 -0.2241 17 8 -0.7070 -3.8155 -0.1240 18 7 -0.6504 -6.0257 -0.3384 19 6 -2.0424 -6.0938 -0.4618 20 6 -2.7404 -7.2300 -0.0606 21 7 -4.0561 -7.2551 -0.1943 22 6 -4.7048 -6.2245 -0.6983 23 7 -4.0807 -5.1315 -1.0894 24 6 -2.7661 -5.0274 -0.9890 25 1 -0.4850 0.8401 0.0004 26 1 3.9513 -2.4843 -0.0089 27 1 5.2799 -4.5403 -0.2127 28 1 4.1673 -6.7242 -0.4204 29 1 1.7153 -6.8696 -0.4264 30 1 -0.1234 -6.8399 -0.3352 31 1 -2.2154 -8.0780 0.3538 32 1 -5.7793 -6.2771 -0.7935 33 1 -2.2614 -4.1285 -1.3111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767150882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = 27.734210 kcal Electronic energy + Delta-G solvation = -21334.921434 eV Core-core repulsion = 17941.362211 eV Total energy + Delta-G solvation = -3393.559223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.10548 -39.72143 -38.36841 -36.52864 -34.87049 -33.51441 -32.47871 -31.35020 -29.56221 -29.06649 -25.57231 -24.67445 -24.36361 -22.83327 -21.53174 -20.30979 -18.51162 -18.12724 -17.46917 -17.00923 -16.86212 -16.10183 -14.92654 -14.77448 -14.55909 -14.37350 -14.26036 -13.92391 -13.59293 -13.50763 -13.28330 -13.01132 -12.69117 -11.82983 -11.51240 -11.39303 -11.27079 -11.02655 -10.96068 -10.88559 -10.68748 -10.54281 -9.76636 -9.31188 -8.99697 -8.98220 -8.48601 -8.20292 -7.47119 -6.57330 -4.17095 0.96110 1.20405 1.55618 2.17340 3.05334 3.06476 3.11452 3.15336 3.38793 3.83518 3.97206 4.28036 4.40807 4.47103 4.64100 4.90457 4.92571 5.02395 5.21957 5.34416 5.47537 5.59725 5.87818 5.95369 6.01827 6.20758 6.40186 6.50907 6.73495 6.74676 6.90672 7.07333 7.10931 7.15679 7.53266 7.57777 7.81423 8.21693 8.61489 8.82464 9.50428 10.55849 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.005387 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.155681 B = 5196.053829 C = 6940.468028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.404 4.404 8 H 0.096 0.904 9 O -0.120 6.120 10 C 0.190 3.810 11 C -0.234 4.234 12 C -0.047 4.047 13 C -0.229 4.229 14 C -0.035 4.035 15 C -0.234 4.234 16 C 0.554 3.446 17 O -0.479 6.479 18 N -0.671 5.671 19 C 0.070 3.930 20 C 0.103 3.897 21 N -0.503 5.503 22 C 0.251 3.749 23 N -0.496 5.496 24 C 0.139 3.861 25 H 0.274 0.726 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.408 0.592 31 H 0.166 0.834 32 H 0.193 0.807 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -11.923 -1.210 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.113 0.887 9 O -0.018 6.018 10 C 0.129 3.871 11 C -0.253 4.253 12 C -0.065 4.065 13 C -0.248 4.248 14 C -0.054 4.054 15 C -0.239 4.239 16 C 0.346 3.654 17 O -0.351 6.351 18 N -0.318 5.318 19 C -0.032 4.032 20 C -0.066 4.066 21 N -0.216 5.216 22 C -0.037 4.037 23 N -0.209 5.209 24 C -0.031 4.031 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.245 0.755 31 H 0.183 0.817 32 H 0.209 0.791 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.117 -10.902 -1.198 10.968 hybrid contribution 1.791 0.314 0.171 1.827 sum 1.674 -10.588 -1.027 10.769 Atomic orbital electron populations 1.70105 1.06027 1.28120 1.41564 1.25421 0.95847 0.99088 0.95937 0.85695 0.79003 0.79729 0.78929 1.19608 1.20024 1.18983 1.21536 0.92001 0.80906 1.53505 0.88653 1.84138 1.33809 1.11145 1.72698 1.19211 0.89932 0.87176 0.90743 1.21177 0.93254 0.99488 1.11391 1.20944 0.98826 0.92260 0.94489 1.20472 0.93960 0.97261 1.13123 1.20744 0.94020 0.95305 0.95341 1.18542 0.90536 0.92493 1.22379 1.18508 0.88476 0.82090 0.76338 1.90937 1.65314 1.33645 1.45235 1.43532 1.03618 1.10668 1.73976 1.19692 0.85988 0.98284 0.99231 1.22918 0.90083 0.97240 0.96364 1.68279 1.08503 1.30248 1.14566 1.24794 1.01124 0.84475 0.93320 1.68481 1.10001 1.25728 1.16735 1.23847 0.89079 0.98788 0.91345 0.91581 0.84870 0.86962 0.87034 0.86990 0.75460 0.81671 0.79053 0.79392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.03 13.67 55.48 0.76 -23.27 16 2 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 19.75 29.55 -169.99 -5.02 14.72 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.40 -10.88 9.49 30.90 0.29 -10.58 16 8 H 0.10 2.32 5.20 -52.48 -0.27 2.04 16 9 O -0.12 -3.35 7.84 -21.03 -0.16 -3.52 16 10 C 0.19 4.39 6.66 -38.59 -0.26 4.13 16 11 C -0.23 -4.67 9.16 -39.44 -0.36 -5.03 16 12 C -0.05 -0.75 10.03 -39.54 -0.40 -1.15 16 13 C -0.23 -3.38 10.02 -39.61 -0.40 -3.78 16 14 C -0.04 -0.54 9.53 -39.20 -0.37 -0.91 16 15 C -0.23 -4.64 5.89 -104.82 -0.62 -5.26 16 16 C 0.55 11.08 7.58 -12.48 -0.09 10.99 16 17 O -0.48 -11.94 12.46 -16.58 -0.21 -12.15 16 18 N -0.67 -9.96 5.32 -10.62 -0.06 -10.01 16 19 C 0.07 1.07 6.46 -83.42 -0.54 0.53 16 20 C 0.10 1.34 11.24 -16.99 -0.19 1.15 16 21 N -0.50 -7.01 10.43 -14.43 -0.15 -7.16 16 22 C 0.25 3.55 12.28 -92.15 -1.13 2.42 16 23 N -0.50 -8.40 10.43 -14.43 -0.15 -8.55 16 24 C 0.14 2.49 9.98 -16.99 -0.17 2.32 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.13 2.63 5.64 -52.48 -0.30 2.33 16 27 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 29 H 0.11 1.23 6.42 -52.49 -0.34 0.89 16 30 H 0.41 4.39 6.85 -40.82 -0.28 4.11 16 31 H 0.17 1.51 8.06 -52.48 -0.42 1.08 16 32 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.19 3.87 5.98 -52.48 -0.31 3.56 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -33.18 295.46 -7.20 -40.38 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -2.33 Total: 9.16 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.33 Total: -4.04 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.40 Total: -49.00 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.37 Total: -15.67 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.18 -7.20 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767150882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.110 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds