Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48504 * 109.47088 * 270.00110 * 3 2 1 5 5 H 1.48501 * 109.47206 * 30.00180 * 3 2 1 6 6 H 1.48499 * 109.47126 * 150.00402 * 3 2 1 7 7 C 1.38702 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99757 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.35515 * 117.00214 * 174.97628 * 9 7 2 11 11 C 1.38832 * 120.16190 * 5.23267 * 10 9 7 12 12 C 1.38028 * 120.07216 * 180.30468 * 11 10 9 13 13 C 1.38566 * 120.40527 * 359.69353 * 12 11 10 14 14 C 1.37829 * 120.32782 * 0.02696 * 13 12 11 15 15 C 1.39674 * 119.91174 * 359.97438 * 14 13 12 16 16 C 1.47506 * 120.19275 * 179.97438 * 15 14 13 17 17 O 1.21609 * 120.00009 * 180.02562 * 16 15 14 18 18 N 1.34773 * 120.00303 * 0.02562 * 16 15 14 19 19 C 1.39905 * 120.00113 * 185.68598 * 18 16 15 20 20 C 1.39251 * 120.87089 * 205.65504 * 19 18 16 21 21 N 1.32265 * 119.01198 * 180.02562 * 20 19 18 22 22 C 1.31793 * 120.89396 * 359.97438 * 21 20 19 23 23 N 1.31799 * 121.92886 * 0.02562 * 22 21 20 24 24 C 1.32255 * 120.89372 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.96634 * 0.02583 * 11 10 9 27 27 H 1.08005 * 119.79733 * 179.72252 * 12 11 10 28 28 H 1.08008 * 119.83561 * 180.02562 * 13 12 11 29 29 H 1.07995 * 120.04105 * 180.02562 * 14 13 12 30 30 H 0.96998 * 119.99853 * 5.68391 * 18 16 15 31 31 H 1.08005 * 120.49619 * 0.04158 * 20 19 18 32 32 H 1.07998 * 119.03438 * 180.02562 * 22 21 20 33 33 H 1.08006 * 120.48966 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0086 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3346 -2.3687 -0.0016 10 6 2.0686 -3.5029 -0.1078 11 6 3.4554 -3.4395 -0.1001 12 6 4.2013 -4.5952 -0.2147 13 6 3.5746 -5.8256 -0.3317 14 6 2.1988 -5.9083 -0.3354 15 6 1.4309 -4.7473 -0.2202 16 6 -0.0419 -4.8286 -0.2241 17 8 -0.7070 -3.8155 -0.1240 18 7 -0.6504 -6.0257 -0.3384 19 6 -2.0424 -6.0938 -0.4618 20 6 -2.7404 -7.2300 -0.0606 21 7 -4.0561 -7.2551 -0.1943 22 6 -4.7048 -6.2245 -0.6983 23 7 -4.0807 -5.1315 -1.0894 24 6 -2.7661 -5.0274 -0.9890 25 1 -0.4850 0.8401 0.0004 26 1 3.9513 -2.4843 -0.0089 27 1 5.2799 -4.5403 -0.2127 28 1 4.1673 -6.7242 -0.4204 29 1 1.7153 -6.8696 -0.4264 30 1 -0.1234 -6.8399 -0.3352 31 1 -2.2154 -8.0780 0.3538 32 1 -5.7793 -6.2771 -0.7935 33 1 -2.2614 -4.1285 -1.3111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767150882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = 4.145550 kcal Electronic energy + Delta-G solvation = -21335.944315 eV Core-core repulsion = 17941.362211 eV Total energy + Delta-G solvation = -3394.582104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.37996 -41.21528 -39.93610 -38.08584 -36.32604 -34.72372 -34.34929 -32.76327 -30.86724 -30.57762 -27.42954 -25.99256 -25.61677 -24.21162 -23.04994 -21.75219 -19.97789 -19.77663 -18.65053 -18.40024 -18.31542 -17.54849 -16.42317 -16.29513 -16.13717 -15.90950 -15.70472 -15.33807 -15.16127 -14.69622 -14.61277 -14.48754 -14.29672 -13.56864 -13.05032 -12.73992 -12.57186 -12.55631 -12.38067 -12.29705 -12.13691 -11.90779 -11.46959 -10.86191 -10.83453 -10.27636 -9.92074 -9.48447 -9.05894 -8.47141 -6.17711 -0.29422 -0.01771 0.16535 0.71602 1.32400 1.43395 1.50871 1.84309 1.91495 2.14163 2.75702 2.86352 3.17683 3.22532 3.27574 3.40694 3.44955 3.68068 3.96156 4.06657 4.25994 4.36602 4.50014 4.62453 4.77439 4.92747 5.00448 5.05930 5.11244 5.44507 5.47631 5.58064 5.69273 5.89667 5.92676 6.14338 6.36724 6.92630 7.02993 7.17728 7.75488 8.72646 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.005387 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.155681 B = 5196.053829 C = 6940.468028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.020 4.020 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.426 4.426 8 H 0.109 0.891 9 O -0.187 6.187 10 C 0.152 3.848 11 C -0.258 4.258 12 C -0.036 4.036 13 C -0.199 4.199 14 C -0.025 4.025 15 C -0.246 4.246 16 C 0.550 3.450 17 O -0.539 6.539 18 N -0.644 5.644 19 C 0.056 3.944 20 C 0.134 3.866 21 N -0.503 5.503 22 C 0.256 3.744 23 N -0.524 5.524 24 C 0.110 3.890 25 H 0.271 0.729 26 H 0.123 0.877 27 H 0.154 0.846 28 H 0.166 0.834 29 H 0.168 0.832 30 H 0.432 0.568 31 H 0.217 0.783 32 H 0.228 0.772 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -16.755 -1.036 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.170 1.170 7 C -0.502 4.502 8 H 0.126 0.874 9 O -0.089 6.089 10 C 0.097 3.903 11 C -0.277 4.277 12 C -0.054 4.054 13 C -0.218 4.218 14 C -0.044 4.044 15 C -0.251 4.251 16 C 0.343 3.657 17 O -0.416 6.416 18 N -0.293 5.293 19 C -0.045 4.045 20 C -0.037 4.037 21 N -0.216 5.216 22 C -0.031 4.031 23 N -0.238 5.238 24 C -0.057 4.057 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.171 0.829 28 H 0.184 0.816 29 H 0.185 0.815 30 H 0.274 0.726 31 H 0.234 0.766 32 H 0.244 0.756 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.321 -15.844 -1.039 16.047 hybrid contribution 1.150 1.221 0.080 1.679 sum 3.471 -14.623 -0.959 15.060 Atomic orbital electron populations 1.70300 1.08316 1.28638 1.46565 1.26718 0.96692 1.03072 0.95496 0.84585 0.77957 0.74316 0.79299 1.18744 1.19947 1.16999 1.22020 0.92722 0.81656 1.53760 0.87430 1.84152 1.35253 1.12228 1.77249 1.20060 0.91700 0.87450 0.91094 1.21306 0.92278 1.01058 1.13044 1.21480 1.00814 0.91338 0.91756 1.21203 0.94015 0.98432 1.08117 1.21359 0.94481 0.95612 0.92913 1.19017 0.90977 0.93120 1.21957 1.18753 0.88806 0.82667 0.75495 1.90949 1.66495 1.36249 1.47864 1.43064 1.03660 1.09905 1.72622 1.19701 0.85981 0.98589 1.00200 1.23668 0.89681 0.96927 0.93401 1.68451 1.08869 1.29762 1.14533 1.25515 1.02574 0.83458 0.91571 1.68434 1.09694 1.27520 1.18159 1.23383 0.90080 0.98876 0.93374 0.92032 0.85911 0.82882 0.81616 0.81512 0.72638 0.76626 0.75631 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.95 13.67 21.62 0.30 -57.65 16 2 C -0.02 -1.16 5.49 84.85 0.47 -0.70 16 3 Si 1.02 43.32 29.55 68.60 2.03 45.35 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.43 -24.89 9.49 67.93 0.64 -24.24 16 8 H 0.11 5.61 5.20 -2.91 -0.02 5.60 16 9 O -0.19 -11.34 7.84 0.93 0.01 -11.33 16 10 C 0.15 7.36 6.66 22.91 0.15 7.51 16 11 C -0.26 -10.26 9.16 22.36 0.20 -10.05 16 12 C -0.04 -1.00 10.03 22.30 0.22 -0.78 16 13 C -0.20 -4.57 10.02 22.25 0.22 -4.35 16 14 C -0.03 -0.65 9.53 22.52 0.21 -0.43 16 15 C -0.25 -9.64 5.89 -19.99 -0.12 -9.75 16 16 C 0.55 22.68 7.58 86.69 0.66 23.34 16 17 O -0.54 -29.41 12.46 16.84 0.21 -29.20 16 18 N -0.64 -18.04 5.32 -305.78 -1.63 -19.67 16 19 C 0.06 1.68 6.46 38.34 0.25 1.92 16 20 C 0.13 2.97 11.24 84.87 0.95 3.92 16 21 N -0.50 -12.46 10.43 -199.57 -2.08 -14.55 16 22 C 0.26 6.86 12.28 180.88 2.22 9.08 16 23 N -0.52 -18.29 10.43 -199.57 -2.08 -20.37 16 24 C 0.11 4.20 9.98 84.87 0.85 5.05 16 25 H 0.27 16.02 8.31 -92.71 -0.77 15.24 16 26 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 27 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 28 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.17 2.39 6.42 -2.91 -0.02 2.38 16 30 H 0.43 7.31 6.85 -92.71 -0.64 6.68 16 31 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.23 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.15 6.84 5.98 -2.91 -0.02 6.82 16 Total: -1.00 -86.80 295.46 4.24 -82.56 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.55 Total: 24.34 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.94 Total: 0.52 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -5.49 Total: -112.23 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: 0.22 Total: -40.53 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -86.80 4.24 -82.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767150882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.704 kcal (2) G-P(sol) polarization free energy of solvation -86.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds