Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47020 * 239.99880 * 3 2 1 5 5 H 1.48498 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46922 * 120.00161 * 3 2 1 7 7 C 1.40053 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99520 * 0.02562 * 7 2 1 10 10 O 1.21680 * 120.00311 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99727 * 179.97438 * 9 7 2 12 12 N 1.40091 * 120.00133 * 180.02562 * 11 9 7 13 13 C 1.34773 * 120.00497 * 180.02562 * 12 11 9 14 14 O 1.21589 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.47548 * 120.00488 * 180.02562 * 13 12 11 16 16 C 1.38695 * 120.38924 * 354.02934 * 15 13 12 17 17 C 1.38972 * 120.54417 * 180.28679 * 16 15 13 18 18 C 1.36207 * 121.23125 * 359.71742 * 17 16 15 19 19 C 1.40711 * 120.20256 * 0.02562 * 18 17 16 20 20 N 1.33684 * 120.93747 * 180.02562 * 19 18 17 21 21 C 1.31062 * 121.34212 * 180.02562 * 20 19 18 22 22 C 1.39335 * 121.70777 * 359.95050 * 21 20 19 23 23 C 1.36681 * 119.87159 * 0.02562 * 22 21 20 24 24 C 1.40476 * 118.16387 * 0.02562 * 23 22 21 25 25 H 0.96993 * 120.00569 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99781 * 359.97438 * 11 9 7 27 27 H 0.97005 * 120.00057 * 0.02562 * 12 11 9 28 28 H 1.08005 * 119.72890 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.38422 * 179.69648 * 17 16 15 30 30 H 1.07998 * 119.89910 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.14660 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.06998 * 180.02562 * 22 21 20 33 33 H 1.07993 * 120.91924 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0584 -2.4806 -0.0004 11 7 1.9492 -3.6477 0.0005 12 7 1.2488 -4.8609 0.0000 13 6 1.9227 -6.0281 0.0005 14 8 3.1386 -6.0281 0.0010 15 6 1.1850 -7.3060 -0.0006 16 6 -0.1964 -7.3188 0.1222 17 6 -0.8939 -8.5208 0.1275 18 6 -0.2468 -9.7133 0.0073 19 6 1.1536 -9.7486 -0.1251 20 7 1.8036 -10.9106 -0.2446 21 6 3.1078 -10.9527 -0.3678 22 6 3.8799 -9.7930 -0.3816 23 6 3.2767 -8.5721 -0.2640 24 6 1.8787 -8.5333 -0.1311 25 1 -0.4850 0.8399 0.0004 26 1 2.9192 -3.6476 0.0002 27 1 0.2788 -4.8610 -0.0008 28 1 -0.7341 -6.3872 0.2196 29 1 -1.9690 -8.5092 0.2291 30 1 -0.8102 -10.6346 0.0144 31 1 3.5966 -11.9112 -0.4616 32 1 4.9529 -9.8584 -0.4850 33 1 3.8586 -7.6625 -0.2730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772866221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = 21.329901 kcal Electronic energy + Delta-G solvation = -20861.136720 eV Core-core repulsion = 17467.299785 eV Total energy + Delta-G solvation = -3393.836935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09513 -39.30880 -37.34787 -36.92851 -34.37851 -33.34916 -32.63914 -31.17949 -30.65482 -29.31774 -26.31247 -24.68421 -23.57928 -23.22521 -20.80505 -20.58845 -18.61731 -17.78503 -17.01488 -16.99739 -16.45800 -15.90627 -15.28694 -15.03150 -14.89835 -14.65166 -14.20792 -14.03319 -13.75114 -13.24419 -12.91979 -12.79497 -12.60549 -12.20446 -11.82219 -11.46186 -11.45753 -11.16329 -10.71303 -10.56959 -10.45936 -10.23537 -10.14737 -9.24214 -9.01785 -8.93726 -8.43638 -8.04926 -7.25964 -6.43740 -4.89303 0.05542 0.69640 1.69273 2.58962 2.70037 3.06672 3.12331 3.15918 3.27808 3.99964 4.05518 4.13045 4.35196 4.40090 4.60879 4.69702 4.78985 4.95175 4.97928 5.19613 5.27610 5.49780 5.53471 5.67001 5.72417 5.84673 6.09268 6.12872 6.25236 6.48323 6.66595 7.17946 7.23344 7.69234 7.76634 7.82070 8.08594 8.65608 8.78321 9.11904 10.29071 10.48574 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035281 B = 0.003438 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.429760 B = 8142.780107 C = 8920.430605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.553 3.447 10 O -0.580 6.580 11 N -0.558 5.558 12 N -0.496 5.496 13 C 0.543 3.457 14 O -0.555 6.555 15 C -0.094 4.094 16 C -0.079 4.079 17 C -0.106 4.106 18 C -0.073 4.073 19 C 0.119 3.881 20 N -0.481 5.481 21 C 0.131 3.869 22 C -0.184 4.184 23 C -0.056 4.056 24 C -0.066 4.066 25 H 0.273 0.727 26 H 0.415 0.585 27 H 0.425 0.575 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -16.444 -0.278 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.359 3.641 10 O -0.461 6.461 11 N -0.312 5.312 12 N -0.236 5.236 13 C 0.329 3.671 14 O -0.436 6.436 15 C -0.099 4.099 16 C -0.098 4.098 17 C -0.126 4.126 18 C -0.092 4.092 19 C -0.002 4.002 20 N -0.189 5.189 21 C -0.042 4.042 22 C -0.204 4.204 23 C -0.081 4.081 24 C -0.069 4.069 25 H 0.084 0.916 26 H 0.254 0.746 27 H 0.267 0.733 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.155 0.845 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.486 -16.991 -0.259 17.058 hybrid contribution 0.859 1.450 -0.001 1.685 sum 2.345 -15.541 -0.260 15.719 Atomic orbital electron populations 1.69984 1.07164 1.28065 1.33795 1.25725 0.94787 1.00488 0.92393 0.86240 0.79688 0.80053 0.79748 1.19009 1.20376 1.19001 1.20651 0.93970 0.87782 1.54439 0.90575 1.18672 0.87664 0.80713 0.77028 1.90613 1.13749 1.85749 1.55999 1.45987 1.07795 0.94130 1.83331 1.44596 1.09311 0.98792 1.70935 1.17966 0.87388 0.82518 0.79259 1.90517 1.13080 1.86334 1.53704 1.19753 0.93622 0.92193 1.04341 1.21564 0.92891 0.99329 0.96055 1.20840 1.00805 0.91494 0.99436 1.20965 0.91800 0.98914 0.97497 1.18831 0.94263 0.88013 0.99112 1.68038 1.10344 1.27237 1.13269 1.22981 0.89472 0.98712 0.93026 1.22045 1.01840 0.93384 1.03121 1.22733 0.93867 1.00855 0.90624 1.18607 0.94691 0.92568 1.01061 0.91579 0.74556 0.73339 0.84571 0.84376 0.84380 0.82513 0.84475 0.80251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.53 11.83 55.55 0.66 -20.87 16 2 C 0.09 2.30 5.50 -17.37 -0.10 2.21 16 3 Si 0.92 19.10 29.56 -169.99 -5.02 14.07 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.53 -14.20 9.54 -35.63 -0.34 -14.54 16 8 H 0.08 1.85 7.85 -52.49 -0.41 1.44 16 9 C 0.55 14.97 7.86 -12.99 -0.10 14.87 16 10 O -0.58 -17.39 14.86 5.21 0.08 -17.31 16 11 N -0.56 -12.65 6.26 30.19 0.19 -12.46 16 12 N -0.50 -9.69 6.21 30.46 0.19 -9.50 16 13 C 0.54 9.71 7.84 -12.47 -0.10 9.61 16 14 O -0.56 -10.77 13.25 5.29 0.07 -10.70 16 15 C -0.09 -1.41 5.90 -104.66 -0.62 -2.03 16 16 C -0.08 -0.98 9.51 -39.14 -0.37 -1.35 16 17 C -0.11 -1.10 9.92 -40.04 -0.40 -1.49 16 18 C -0.07 -0.82 9.96 -39.38 -0.39 -1.21 16 19 C 0.12 1.62 6.60 -84.88 -0.56 1.06 16 20 N -0.48 -6.29 10.34 -10.99 -0.11 -6.40 16 21 C 0.13 1.41 11.15 -17.47 -0.19 1.21 16 22 C -0.18 -2.04 10.03 -39.74 -0.40 -2.44 16 23 C -0.06 -0.78 9.29 -39.30 -0.37 -1.15 16 24 C -0.07 -0.98 5.76 -106.53 -0.61 -1.59 16 25 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 26 H 0.41 8.83 7.98 -182.60 -1.46 7.37 16 27 H 0.42 7.87 6.07 -182.60 -1.11 6.76 16 28 H 0.14 1.54 6.43 -52.48 -0.34 1.20 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.18 2.76 4.97 -52.50 -0.26 2.50 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -33.61 296.31 -8.44 -42.05 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.40 Total: 13.50 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -4.55 Total: 3.16 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.92 Total: -49.23 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: 0.15 Total: -28.01 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.61 -8.44 -42.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772866221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.377 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds