Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 119.99707 * 2 1 4 4 H 1.48499 * 109.47020 * 239.99880 * 3 2 1 5 5 H 1.48498 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46922 * 120.00161 * 3 2 1 7 7 C 1.40053 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99520 * 0.02562 * 7 2 1 10 10 O 1.21680 * 120.00311 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99727 * 179.97438 * 9 7 2 12 12 N 1.40091 * 120.00133 * 180.02562 * 11 9 7 13 13 C 1.34773 * 120.00497 * 180.02562 * 12 11 9 14 14 O 1.21589 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.47548 * 120.00488 * 180.02562 * 13 12 11 16 16 C 1.38695 * 120.38924 * 354.02934 * 15 13 12 17 17 C 1.38972 * 120.54417 * 180.28679 * 16 15 13 18 18 C 1.36207 * 121.23125 * 359.71742 * 17 16 15 19 19 C 1.40711 * 120.20256 * 0.02562 * 18 17 16 20 20 N 1.33684 * 120.93747 * 180.02562 * 19 18 17 21 21 C 1.31062 * 121.34212 * 180.02562 * 20 19 18 22 22 C 1.39335 * 121.70777 * 359.95050 * 21 20 19 23 23 C 1.36681 * 119.87159 * 0.02562 * 22 21 20 24 24 C 1.40476 * 118.16387 * 0.02562 * 23 22 21 25 25 H 0.96993 * 120.00569 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99781 * 359.97438 * 11 9 7 27 27 H 0.97005 * 120.00057 * 0.02562 * 12 11 9 28 28 H 1.08005 * 119.72890 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.38422 * 179.69648 * 17 16 15 30 30 H 1.07998 * 119.89910 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.14660 * 179.97438 * 21 20 19 32 32 H 1.07997 * 120.06998 * 180.02562 * 22 21 20 33 33 H 1.07993 * 120.91924 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0584 -2.4806 -0.0004 11 7 1.9492 -3.6477 0.0005 12 7 1.2488 -4.8609 0.0000 13 6 1.9227 -6.0281 0.0005 14 8 3.1386 -6.0281 0.0010 15 6 1.1850 -7.3060 -0.0006 16 6 -0.1964 -7.3188 0.1222 17 6 -0.8939 -8.5208 0.1275 18 6 -0.2468 -9.7133 0.0073 19 6 1.1536 -9.7486 -0.1251 20 7 1.8036 -10.9106 -0.2446 21 6 3.1078 -10.9527 -0.3678 22 6 3.8799 -9.7930 -0.3816 23 6 3.2767 -8.5721 -0.2640 24 6 1.8787 -8.5333 -0.1311 25 1 -0.4850 0.8399 0.0004 26 1 2.9192 -3.6476 0.0002 27 1 0.2788 -4.8610 -0.0008 28 1 -0.7341 -6.3872 0.2196 29 1 -1.9690 -8.5092 0.2291 30 1 -0.8102 -10.6346 0.0144 31 1 3.5966 -11.9112 -0.4616 32 1 4.9529 -9.8584 -0.4850 33 1 3.8586 -7.6625 -0.2730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772866221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -3.136670 kcal Electronic energy + Delta-G solvation = -20862.197670 eV Core-core repulsion = 17467.299785 eV Total energy + Delta-G solvation = -3394.897885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15391 -40.73795 -39.17464 -37.97112 -36.11610 -34.66428 -34.37214 -32.65733 -31.58319 -30.67712 -28.24586 -25.72531 -24.56266 -24.37201 -22.50863 -22.12484 -19.91621 -19.03588 -18.61797 -18.24672 -17.61527 -17.54054 -16.87535 -16.43434 -16.10348 -15.75043 -15.61168 -15.33817 -14.84983 -14.72493 -14.58950 -14.13430 -13.93270 -13.29750 -13.12470 -12.85293 -12.76525 -12.75616 -12.36856 -12.08110 -12.03849 -11.54024 -11.40179 -10.96299 -10.39760 -10.15144 -9.85968 -9.49006 -9.01997 -8.41670 -6.97870 -0.95167 -0.23251 0.62497 1.12131 1.43421 1.44483 1.57299 1.58546 2.07050 2.26140 2.37512 3.06776 3.12757 3.28328 3.47920 3.68398 3.74019 3.78377 3.81007 4.06290 4.16539 4.38516 4.42453 4.71873 4.75242 5.00552 5.14416 5.20092 5.24550 5.30155 5.39184 5.56742 5.75533 5.92664 6.07067 6.25966 6.74426 6.83451 7.08012 7.20444 8.27218 8.52947 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035281 B = 0.003438 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.429760 B = 8142.780107 C = 8920.430605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.034 3.966 3 Si 1.004 2.996 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.559 4.559 8 H 0.094 0.906 9 C 0.542 3.458 10 O -0.619 6.619 11 N -0.556 5.556 12 N -0.503 5.503 13 C 0.548 3.452 14 O -0.573 6.573 15 C -0.126 4.126 16 C -0.067 4.067 17 C -0.102 4.102 18 C -0.062 4.062 19 C 0.098 3.902 20 N -0.492 5.492 21 C 0.131 3.869 22 C -0.167 4.167 23 C -0.090 4.090 24 C -0.082 4.082 25 H 0.280 0.720 26 H 0.420 0.580 27 H 0.427 0.573 28 H 0.143 0.857 29 H 0.177 0.823 30 H 0.165 0.835 31 H 0.199 0.801 32 H 0.168 0.832 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -17.831 -0.305 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.183 4.183 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.597 4.597 8 H 0.112 0.888 9 C 0.348 3.652 10 O -0.504 6.504 11 N -0.308 5.308 12 N -0.246 5.246 13 C 0.337 3.663 14 O -0.455 6.455 15 C -0.131 4.131 16 C -0.086 4.086 17 C -0.122 4.122 18 C -0.081 4.081 19 C -0.023 4.023 20 N -0.200 5.200 21 C -0.041 4.041 22 C -0.186 4.186 23 C -0.115 4.115 24 C -0.085 4.085 25 H 0.090 0.910 26 H 0.260 0.740 27 H 0.270 0.730 28 H 0.161 0.839 29 H 0.194 0.806 30 H 0.183 0.817 31 H 0.216 0.784 32 H 0.186 0.814 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.961 -18.431 -0.286 18.537 hybrid contribution 0.757 1.639 0.001 1.806 sum 2.717 -16.792 -0.286 17.012 Atomic orbital electron populations 1.70119 1.09381 1.29680 1.34795 1.26952 0.95657 1.04696 0.90984 0.84961 0.78157 0.74212 0.80372 1.17847 1.19581 1.17825 1.21209 0.95102 0.88510 1.54879 0.88842 1.18919 0.87360 0.82080 0.76869 1.90564 1.15245 1.86711 1.57887 1.45495 1.07923 0.94971 1.82417 1.44712 1.09348 0.97937 1.72604 1.18539 0.87360 0.82860 0.77580 1.90514 1.14102 1.86775 1.54138 1.19548 0.94603 0.90626 1.08356 1.21816 0.91953 1.00811 0.94023 1.21201 1.02517 0.90105 0.98354 1.21361 0.91008 1.00306 0.95386 1.19162 0.95430 0.87722 0.99945 1.68118 1.11469 1.26768 1.13652 1.23660 0.88900 1.00192 0.91375 1.22396 1.03452 0.92317 1.00451 1.22636 0.93949 1.01455 0.93457 1.18772 0.95207 0.92919 1.01598 0.90966 0.73960 0.73042 0.83902 0.80555 0.81722 0.78437 0.81427 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.85 11.83 21.84 0.26 -46.59 16 2 C 0.03 1.80 5.50 85.31 0.47 2.27 16 3 Si 1.00 38.91 29.56 68.60 2.03 40.94 16 4 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.56 -30.51 9.54 24.83 0.24 -30.27 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.54 30.37 7.86 86.36 0.68 31.05 16 10 O -0.62 -38.64 14.86 -4.28 -0.06 -38.70 16 11 N -0.56 -26.19 6.26 -176.63 -1.10 -27.30 16 12 N -0.50 -20.53 6.21 -175.81 -1.09 -21.62 16 13 C 0.55 20.46 7.84 86.70 0.68 21.14 16 14 O -0.57 -23.33 13.25 -3.99 -0.05 -23.38 16 15 C -0.13 -3.88 5.90 -19.89 -0.12 -3.99 16 16 C -0.07 -1.62 9.51 22.56 0.21 -1.41 16 17 C -0.10 -1.87 9.92 21.97 0.22 -1.65 16 18 C -0.06 -1.24 9.96 22.40 0.22 -1.01 16 19 C 0.10 2.54 6.60 40.27 0.27 2.81 16 20 N -0.49 -11.76 10.34 -188.69 -1.95 -13.71 16 21 C 0.13 2.47 11.15 85.07 0.95 3.42 16 22 C -0.17 -3.42 10.03 22.17 0.22 -3.19 16 23 C -0.09 -2.55 9.29 22.45 0.21 -2.34 16 24 C -0.08 -2.43 5.76 -21.10 -0.12 -2.55 16 25 H 0.28 14.59 8.29 -92.71 -0.77 13.82 16 26 H 0.42 18.59 7.98 -213.32 -1.70 16.89 16 27 H 0.43 16.58 6.07 -213.32 -1.29 15.29 16 28 H 0.14 3.21 6.43 -2.91 -0.02 3.19 16 29 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.16 5.14 4.97 -3.15 -0.02 5.13 16 Total: -1.00 -75.81 296.31 0.35 -75.45 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -1.80 Total: 40.64 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 4.13 Total: 14.27 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -3.89 Total: -109.22 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -0.12 Total: -62.08 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -75.81 0.35 -75.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772866221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.315 kcal (2) G-P(sol) polarization free energy of solvation -75.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds