Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00427 * 2 1 4 4 C 1.50697 * 109.47521 * 180.02562 * 3 2 1 5 5 N 1.30913 * 123.03459 * 90.02263 * 4 3 2 6 6 C 1.29394 * 117.46617 * 179.97438 * 5 4 3 7 7 S 1.70920 * 110.58723 * 0.02562 * 6 5 4 8 8 C 1.36759 * 123.03546 * 269.98662 * 4 3 2 9 9 C 1.46511 * 126.17556 * 0.07128 * 8 4 3 10 10 O 1.21613 * 120.00001 * 359.97438 * 9 8 4 11 11 O 1.34873 * 119.99681 * 179.97438 * 9 8 4 12 12 C 1.45203 * 117.00071 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47223 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46781 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00137 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00324 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99681 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00176 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47193 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47208 * 119.99597 * 19 17 15 22 22 H 1.48498 * 109.47235 * 239.99757 * 19 17 15 23 23 H 1.08993 * 109.46888 * 59.99457 * 1 2 3 24 24 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46766 * 299.99807 * 1 2 3 26 26 H 1.09002 * 109.47076 * 59.99930 * 3 2 1 27 27 H 1.08994 * 109.47102 * 300.00311 * 3 2 1 28 28 H 1.07999 * 124.70165 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46793 * 300.00516 * 12 11 9 30 30 H 1.09002 * 109.46584 * 60.00016 * 12 11 9 31 31 H 1.09003 * 109.47561 * 299.99927 * 13 12 11 32 32 H 1.08996 * 109.47089 * 60.00715 * 13 12 11 33 33 H 1.08996 * 109.47560 * 300.00330 * 14 13 12 34 34 H 1.08998 * 109.47321 * 60.00591 * 14 13 12 35 35 H 0.97002 * 119.99760 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2236 1.1307 -1.0984 6 6 5.5075 1.0294 -0.9734 7 16 5.9497 0.9934 0.6772 8 6 4.2563 1.1276 1.1455 9 6 3.7384 1.1673 2.5155 10 8 2.5417 1.2612 2.7107 11 8 4.5888 1.0997 3.5601 12 6 4.0056 1.1451 4.8891 13 6 5.1168 1.0575 5.9370 14 6 4.5020 1.1047 7.3373 15 6 5.5966 1.0191 8.3696 16 1 6.6276 0.9395 8.0581 17 6 5.2818 1.0425 9.7118 18 7 4.0263 1.1400 10.0911 19 14 6.6385 0.9357 10.9913 20 1 7.9542 0.8331 10.3103 21 1 6.6142 2.1531 11.8414 22 1 6.4257 -0.2646 11.8394 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 6.2031 0.9745 -1.7978 29 1 3.4607 2.0808 5.0149 30 1 3.3208 0.3063 5.0140 31 1 5.6619 0.1220 5.8113 32 1 5.8011 1.8966 5.8119 33 1 3.9565 2.0399 7.4633 34 1 3.8179 0.2654 7.4623 35 1 3.8049 1.1568 11.0354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792731364.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = -115.342867 kcal Electronic energy + Delta-G solvation = -19411.211144 eV Core-core repulsion = 16114.598834 eV Total energy + Delta-G solvation = -3296.612310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81965 -40.76278 -38.61690 -37.85285 -35.95517 -33.74337 -32.60682 -29.92444 -28.73286 -27.25720 -25.67264 -25.39795 -23.46941 -22.20473 -20.58212 -19.96069 -18.64396 -18.03956 -17.94194 -17.79083 -17.43097 -16.60441 -16.49105 -16.19537 -15.85104 -15.61568 -15.19115 -14.72738 -14.14176 -13.98997 -13.88431 -13.78346 -13.40512 -12.86364 -12.60191 -12.51680 -12.44823 -12.32644 -12.13902 -11.93942 -11.53639 -11.46559 -11.24840 -10.92158 -10.76961 -10.67590 -10.57932 -10.13788 -8.21897 -6.33219 -1.08522 0.03254 0.47585 1.04833 1.39384 1.42052 1.43675 1.56084 1.59131 2.41500 2.74518 3.12315 3.22821 3.53515 3.74690 3.97183 3.99743 4.00994 4.29964 4.36920 4.39461 4.49958 4.55340 4.73815 4.77875 4.80791 4.86122 5.05312 5.26867 5.48717 5.63092 5.79995 6.05446 6.18540 6.38464 6.45335 6.82782 7.36381 8.90520 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.003140 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.786354 B = 8915.773954 C = 9927.988192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.124 3.876 4 C 0.148 3.852 5 N -0.490 5.490 6 C 0.047 3.953 7 S 0.276 5.724 8 C -0.310 4.310 9 C 0.540 3.460 10 O -0.515 6.515 11 O -0.351 6.351 12 C 0.080 3.920 13 C -0.093 4.093 14 C 0.026 3.974 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.258 0.742 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.069 0.931 33 H -0.002 1.002 34 H -0.003 1.003 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 0.310 -25.215 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.325 6.325 3 C 0.046 3.954 4 C 0.006 3.994 5 N -0.204 5.204 6 C -0.246 4.246 7 S 0.535 5.465 8 C -0.433 4.433 9 C 0.384 3.616 10 O -0.406 6.406 11 O -0.268 6.268 12 C 0.007 3.993 13 C -0.131 4.131 14 C -0.012 4.012 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.205 1.205 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.274 0.726 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.553 0.108 -25.004 25.134 hybrid contribution -1.118 0.249 1.112 1.596 sum 1.435 0.358 -23.893 23.938 Atomic orbital electron populations 1.22937 0.78641 1.04051 1.01035 1.87843 1.22087 1.26920 1.95686 1.21056 0.85300 0.86172 1.02916 1.20722 0.97531 0.95849 0.85318 1.66120 1.06450 1.17819 1.30025 1.29712 0.94840 0.97464 1.02542 1.84157 1.00691 1.60713 1.00964 1.24858 1.00745 1.22987 0.94682 1.19658 0.84342 0.72837 0.84781 1.90830 1.16900 1.46745 1.86114 1.86552 1.40512 1.83513 1.16224 1.23248 0.97152 1.02247 0.76649 1.21473 0.96644 1.02696 0.92289 1.18938 0.95769 0.95578 0.90865 1.21647 0.94135 1.50395 0.91779 0.91612 1.26007 0.98042 0.94647 1.01238 1.70107 1.19175 1.51331 1.16749 0.85342 0.79256 0.77727 0.78378 1.18299 1.20418 1.20472 0.91923 0.88263 0.93915 0.90455 0.89615 0.72645 0.91329 0.91640 0.91390 0.91211 0.98332 0.98443 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -11.11 10.69 -148.98 -1.59 -12.70 16 3 C 0.12 3.13 5.77 71.24 0.41 3.54 16 4 C 0.15 3.78 6.46 42.35 0.27 4.06 16 5 N -0.49 -10.39 10.49 -189.67 -1.99 -12.38 16 6 C 0.05 0.62 12.21 130.60 1.59 2.21 16 7 S 0.28 4.66 23.08 -56.49 -1.30 3.36 16 8 C -0.31 -8.23 6.52 24.08 0.16 -8.08 16 9 C 0.54 17.74 7.92 69.98 0.55 18.30 16 10 O -0.51 -19.03 14.12 19.47 0.27 -18.76 16 11 O -0.35 -11.87 10.12 -57.87 -0.59 -12.46 16 12 C 0.08 2.98 5.48 71.98 0.39 3.37 16 13 C -0.09 -3.83 5.53 30.59 0.17 -3.66 16 14 C 0.03 1.34 4.97 29.85 0.15 1.49 16 15 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16 16 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 18 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 19 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 2.13 6.06 -2.39 -0.01 2.12 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.26 0.63 8.06 -2.91 -0.02 0.61 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 34 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -72.00 324.67 3.86 -68.15 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.10 Total: 2.04 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.65 Total: -6.74 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -1.70 Total: -68.64 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.90 Total: -43.92 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Total: -72.00 3.86 -68.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792731364.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.196 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds