Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46840 * 2 1 4 4 O 1.42898 * 109.47121 * 240.00414 * 2 1 3 5 5 C 1.50698 * 109.47216 * 120.00484 * 2 1 3 6 6 N 1.29391 * 124.70831 * 74.95616 * 5 2 1 7 7 C 1.30910 * 117.46692 * 179.74220 * 6 5 2 8 8 C 1.36757 * 113.93226 * 0.52685 * 7 6 5 9 9 C 1.46502 * 126.18002 * 179.78550 * 8 7 6 10 10 O 1.21615 * 120.00036 * 179.69303 * 9 8 7 11 11 O 1.34876 * 119.99816 * 359.69156 * 9 8 7 12 12 C 1.45206 * 116.99869 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47129 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.46965 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46857 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00204 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00239 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99661 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47443 * 89.99553 * 19 17 15 21 21 H 1.48501 * 109.47206 * 209.99846 * 19 17 15 22 22 H 1.48508 * 109.47009 * 329.99484 * 19 17 15 23 23 S 1.70923 * 124.70364 * 255.00317 * 5 2 1 24 24 H 1.08996 * 109.47411 * 299.99746 * 1 2 3 25 25 H 1.08998 * 109.47373 * 59.99848 * 1 2 3 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 0.96700 * 114.00215 * 299.99593 * 4 2 1 28 28 H 1.08004 * 123.03767 * 180.35380 * 7 6 5 29 29 H 1.09004 * 109.47122 * 300.00000 * 12 11 9 30 30 H 1.09000 * 109.47070 * 60.00025 * 12 11 9 31 31 H 1.09004 * 109.46930 * 299.99887 * 13 12 11 32 32 H 1.09004 * 109.47059 * 59.99488 * 13 12 11 33 33 H 1.09004 * 109.46976 * 299.99579 * 14 13 12 34 34 H 1.08992 * 109.47530 * 59.99431 * 14 13 12 35 35 H 0.96992 * 120.00102 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0323 -0.7105 1.2304 6 7 2.0176 -1.9934 1.3979 7 6 2.4957 -2.4609 2.5234 8 6 2.9411 -1.4935 3.3813 9 6 3.5202 -1.7147 4.7087 10 8 3.8862 -0.7676 5.3780 11 8 3.6475 -2.9688 5.1884 12 6 4.2292 -3.1128 6.5110 13 6 4.2924 -4.5959 6.8817 14 6 4.9048 -4.7475 8.2756 15 6 4.9665 -6.2082 8.6409 16 1 4.6054 -6.9539 7.9480 17 6 5.4848 -6.5929 9.8593 18 7 5.5382 -7.8676 10.1784 19 14 6.1100 -5.3033 11.0574 20 1 5.0002 -4.8731 11.9453 21 1 7.2055 -5.8795 11.8778 22 1 6.6215 -4.1319 10.3013 23 16 2.6995 0.0667 2.5987 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7211 -1.5951 -1.2330 28 1 2.5323 -3.5152 2.7548 29 1 5.2361 -2.6951 6.5125 30 1 3.6146 -2.5820 7.2381 31 1 3.2858 -5.0140 6.8801 32 1 4.9073 -5.1263 6.1545 33 1 5.9115 -4.3293 8.2776 34 1 4.2897 -4.2172 9.0024 35 1 5.9025 -8.1382 11.0356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798689629.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = -105.267261 kcal Electronic energy + Delta-G solvation = -18970.328567 eV Core-core repulsion = 15674.153168 eV Total energy + Delta-G solvation = -3296.175399 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63965 -39.93905 -37.64973 -36.61247 -34.14048 -32.38057 -31.86500 -30.39275 -27.66689 -26.64361 -23.84056 -23.28693 -22.06769 -20.47152 -20.04076 -18.89917 -17.92238 -16.96765 -16.61547 -16.52435 -16.28893 -15.75244 -15.14105 -14.80996 -14.46285 -14.25644 -14.15947 -13.32589 -13.08984 -12.79043 -12.59301 -12.45353 -12.15218 -11.96039 -11.83715 -11.26696 -11.11950 -11.02987 -10.92265 -10.53069 -10.13860 -10.03005 -9.94797 -9.86356 -9.76904 -9.38518 -9.28428 -8.59489 -6.09616 -4.08948 -0.30357 0.58319 1.15559 1.94031 2.70685 2.75360 3.27788 3.35635 3.38586 3.38684 3.89708 4.23057 4.40450 4.41844 4.53826 4.64374 4.88824 5.11031 5.23401 5.25746 5.37897 5.38638 5.51956 5.67257 5.77999 6.18487 6.32822 6.53558 6.72631 6.99610 7.11775 7.16269 7.27864 7.60677 7.71531 8.46599 8.94458 9.51653 11.03498 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.045689 B = 0.002611 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.690404 B =10722.135044 C =11152.042854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.185 3.815 3 H 0.121 0.879 4 O -0.544 6.544 5 C 0.005 3.995 6 N -0.473 5.473 7 C 0.127 3.873 8 C -0.290 4.290 9 C 0.543 3.457 10 O -0.506 6.506 11 O -0.344 6.344 12 C 0.068 3.932 13 C -0.101 4.101 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 S 0.252 5.748 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.389 0.611 28 H 0.197 0.803 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 17.976 -20.838 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.122 3.878 3 H 0.139 0.861 4 O -0.350 6.350 5 C -0.269 4.269 6 N -0.188 5.188 7 C -0.032 4.032 8 C -0.412 4.412 9 C 0.385 3.615 10 O -0.396 6.396 11 O -0.260 6.260 12 C -0.005 4.005 13 C -0.139 4.139 14 C -0.048 4.048 15 C -0.560 4.560 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 S 0.511 5.489 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.238 0.762 28 H 0.214 0.786 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.339 19.469 -20.763 29.956 hybrid contribution 0.225 -0.969 1.387 1.707 sum -9.113 18.500 -19.377 28.298 Atomic orbital electron populations 1.22507 0.93630 1.04092 1.03676 1.20526 0.93928 0.94810 0.78553 0.86140 1.86575 1.77272 1.30389 1.40810 1.28671 1.01716 0.94043 1.02493 1.65986 1.18806 1.11795 1.22247 1.22772 0.92508 1.01711 0.86243 1.25167 1.17272 0.97865 1.00900 1.19295 0.75616 0.82318 0.84248 1.90907 1.46738 1.43000 1.58994 1.86575 1.74557 1.27982 1.36887 1.23623 0.97851 1.00841 0.78219 1.21585 1.02550 0.90060 0.99717 1.19521 0.95765 0.98493 0.90989 1.21040 1.41607 0.90555 1.02831 0.90768 1.25018 0.95211 0.95219 0.97961 1.69902 1.46140 1.15091 1.22801 0.86784 0.78965 0.82273 0.81319 1.20198 1.21256 1.18972 1.84018 1.51732 1.05976 1.07214 0.91015 0.90215 0.91038 0.76191 0.78623 0.91185 0.91194 0.91395 0.91354 0.96228 0.96666 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 9.52 37.16 0.35 -0.47 16 2 C 0.18 1.13 4.09 -27.88 -0.11 1.02 16 3 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 4 O -0.54 -4.04 13.32 -35.23 -0.47 -4.51 16 5 C 0.00 0.04 6.27 -13.31 -0.08 -0.04 16 6 N -0.47 -4.72 10.32 -11.26 -0.12 -4.84 16 7 C 0.13 1.36 11.20 -18.48 -0.21 1.16 16 8 C -0.29 -3.51 6.51 -36.79 -0.24 -3.75 16 9 C 0.54 8.17 7.92 34.06 0.27 8.44 16 10 O -0.51 -8.75 16.76 -19.35 -0.32 -9.07 16 11 O -0.34 -5.40 10.02 -40.97 -0.41 -5.81 16 12 C 0.07 1.15 5.48 37.16 0.20 1.35 16 13 C -0.10 -1.96 5.53 -26.73 -0.15 -2.11 16 14 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 15 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 16 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 19 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 23 S 0.25 2.33 23.00 -107.50 -2.47 -0.14 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.39 2.14 8.89 45.56 0.40 2.54 16 28 H 0.20 1.84 8.06 -52.48 -0.42 1.41 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 34 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -32.88 324.43 -7.06 -39.94 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -3.75 Total: -2.59 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.51 Total: -7.93 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.66 Total: -31.64 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.20 Total: -19.39 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.47 Total: -0.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.88 -7.06 -39.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798689629.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.324 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds