Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47033 * 269.99828 * 3 2 1 5 5 H 1.48506 * 109.47354 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.47273 * 149.99849 * 3 2 1 7 7 C 1.37876 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47152 * 60.00028 * 12 11 10 14 14 O 1.42902 * 109.47100 * 299.99975 * 12 11 10 15 15 C 1.53004 * 109.46689 * 180.02562 * 12 11 10 16 16 O 1.42905 * 109.46988 * 185.00069 * 15 12 11 17 17 C 1.35921 * 117.00030 * 179.97438 * 16 15 12 18 18 C 1.38707 * 120.06189 * 359.97438 * 17 16 15 19 19 C 1.38145 * 119.95992 * 180.02562 * 18 17 16 20 20 C 1.38275 * 120.07462 * 359.97438 * 19 18 17 21 21 C 1.38251 * 120.12190 * 0.02562 * 20 19 18 22 22 C 1.38256 * 120.03967 * 359.68505 * 21 20 19 23 23 Cl 1.73594 * 120.03837 * 180.31523 * 22 21 20 24 24 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 26 26 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 27 27 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 28 28 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 29 29 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 30 30 H 0.96703 * 114.00039 * 299.99952 * 14 12 11 31 31 H 1.09000 * 109.46945 * 304.99439 * 15 12 11 32 32 H 1.08998 * 109.47126 * 65.00106 * 15 12 11 33 33 H 1.08005 * 120.01588 * 0.02629 * 18 17 16 34 34 H 1.07998 * 119.96173 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.94055 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.97901 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 6 5.9409 -4.0740 0.0027 13 1 5.5647 -4.5780 -0.8875 14 8 5.4458 -4.7346 1.1691 15 6 7.4704 -4.1148 0.0045 16 8 7.9109 -5.4692 -0.1125 17 6 9.2532 -5.6825 -0.1269 18 6 10.1282 -4.6105 -0.0310 19 6 11.4920 -4.8296 -0.0464 20 6 11.9859 -6.1164 -0.1568 21 6 11.1168 -7.1873 -0.2526 22 6 9.7509 -6.9741 -0.2316 23 17 8.6596 -8.3195 -0.3436 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.6259 -3.0953 -0.7806 28 1 5.8473 -2.1141 -0.8873 29 1 5.8459 -2.1147 0.8927 30 1 5.7412 -4.3388 2.0005 31 1 7.8503 -3.5353 -0.8369 32 1 7.8440 -3.6904 0.9364 33 1 9.7433 -3.6050 0.0557 34 1 12.1733 -3.9949 0.0278 35 1 13.0526 -6.2853 -0.1682 36 1 11.5050 -8.1913 -0.3391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -67.801134 kcal Electronic energy + Delta-G solvation = -19308.900560 eV Core-core repulsion = 16012.306107 eV Total energy + Delta-G solvation = -3296.594452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51986 -38.37264 -37.02012 -36.54162 -34.82439 -32.43065 -31.28325 -30.90877 -29.74789 -27.54045 -24.77524 -23.04460 -22.44477 -21.47182 -21.07539 -18.65326 -17.23295 -16.74798 -16.65955 -16.48337 -15.72597 -15.18193 -15.07391 -14.65717 -14.24234 -14.19109 -13.84697 -13.37586 -13.28789 -13.00092 -12.49716 -12.26365 -11.94040 -11.75943 -11.69508 -11.59920 -11.29612 -11.01883 -10.79276 -10.77651 -10.64039 -9.97105 -9.73723 -9.31515 -9.26500 -8.63803 -8.50511 -7.56135 -6.08825 -4.07314 0.76964 0.96462 1.97246 2.76844 3.24294 3.26001 3.32094 3.33355 4.30794 4.37879 4.42891 4.44066 4.60411 4.70322 4.82524 4.87439 5.02392 5.07743 5.22060 5.23276 5.31356 5.34594 5.48647 5.71854 5.81087 5.81987 6.02362 6.08314 6.26052 6.66530 6.92059 6.99741 7.53262 7.79102 7.84399 8.24103 8.60270 9.00248 9.52212 11.04514 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.002834 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.694426 B = 9879.168442 C =10611.133574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.668 5.668 11 C 0.029 3.971 12 C 0.116 3.884 13 H 0.106 0.894 14 O -0.535 6.535 15 C 0.026 3.974 16 O -0.289 6.289 17 C 0.143 3.857 18 C -0.202 4.202 19 C -0.075 4.075 20 C -0.152 4.152 21 C -0.074 4.074 22 C -0.073 4.073 23 Cl -0.054 7.054 24 H 0.264 0.736 25 H 0.026 0.974 26 H -0.021 1.021 27 H 0.339 0.661 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.371 0.629 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.647 -11.184 -0.633 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.299 5.299 11 C -0.102 4.102 12 C 0.056 3.944 13 H 0.124 0.876 14 O -0.339 6.339 15 C -0.050 4.050 16 O -0.201 6.201 17 C 0.096 3.904 18 C -0.221 4.221 19 C -0.093 4.093 20 C -0.170 4.170 21 C -0.093 4.093 22 C -0.100 4.100 23 Cl -0.025 7.025 24 H 0.074 0.926 25 H 0.044 0.956 26 H -0.003 1.003 27 H 0.156 0.844 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.218 0.782 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.855 -11.755 -0.412 28.405 hybrid contribution 0.930 1.835 -0.561 2.132 sum 26.785 -9.920 -0.973 28.580 Atomic orbital electron populations 1.69900 1.06156 1.26914 1.50769 1.24916 0.94769 0.98938 0.94742 0.86810 0.80255 0.83890 0.78403 1.20352 1.21085 1.19282 1.21051 0.88828 0.94934 1.50730 0.90146 1.20032 0.96869 0.84683 0.94688 1.60357 1.03010 1.16676 1.49895 1.22510 0.92620 0.94275 1.00757 1.21907 0.87788 0.93737 0.90990 0.87620 1.86671 1.75128 1.57026 1.15037 1.23781 0.97847 0.81403 1.02015 1.86266 1.17813 1.29084 1.86976 1.18800 0.83919 0.92326 0.95338 1.21296 0.94030 0.98374 1.08400 1.21060 0.94567 0.97379 0.96330 1.21018 0.99905 0.92087 1.04035 1.20942 0.90042 1.00384 0.97896 1.20255 0.91304 0.86978 1.11452 1.98384 1.63666 1.43821 1.96655 0.92587 0.95598 1.00348 0.84363 0.95220 0.91135 0.78233 0.90992 0.91355 0.84568 0.85181 0.85040 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.81 9.87 -34.44 -0.34 -15.15 16 8 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 9 C 0.16 3.93 4.51 -4.97 -0.02 3.91 16 10 N -0.67 -13.50 6.36 -115.05 -0.73 -14.24 16 11 C 0.03 0.44 5.35 -3.82 -0.02 0.42 16 12 C 0.12 1.53 3.46 -26.72 -0.09 1.44 16 13 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 14 O -0.53 -8.04 13.17 -40.10 -0.53 -8.57 16 15 C 0.03 0.27 4.37 37.16 0.16 0.43 16 16 O -0.29 -3.63 9.56 -24.36 -0.23 -3.86 16 17 C 0.14 1.61 6.68 -39.19 -0.26 1.35 16 18 C -0.20 -1.81 9.04 -39.44 -0.36 -2.17 16 19 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 20 C -0.15 -1.07 10.04 -39.56 -0.40 -1.47 16 21 C -0.07 -0.62 9.83 -39.57 -0.39 -1.01 16 22 C -0.07 -0.79 6.33 -39.36 -0.25 -1.04 16 23 Cl -0.05 -0.63 28.50 -51.86 -1.48 -2.11 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 26 H -0.02 -0.49 7.57 -51.93 -0.39 -0.89 16 27 H 0.34 6.76 8.72 -39.29 -0.34 6.42 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.37 4.36 9.05 45.56 0.41 4.78 16 31 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.14 1.01 6.30 -52.48 -0.33 0.68 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -33.09 323.89 -8.40 -41.49 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.95 Total: 4.96 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -2.46 Total: -12.35 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.04 Total: -41.11 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.76 Total: -12.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.09 -8.40 -41.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.313 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds