Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47634 * 2 1 4 4 N 1.41598 * 114.00473 * 180.02562 * 3 2 1 5 5 C 1.46501 * 119.99815 * 269.99820 * 4 3 2 6 6 S 1.65596 * 120.00021 * 89.99789 * 4 3 2 7 7 O 1.42105 * 106.40086 * 165.27838 * 6 4 3 8 8 O 1.42092 * 106.40336 * 32.36181 * 6 4 3 9 9 C 1.76196 * 107.22064 * 278.81908 * 6 4 3 10 10 C 1.37641 * 120.13217 * 116.33981 * 9 6 4 11 11 C 1.38604 * 120.25093 * 180.32357 * 10 9 6 12 12 C 1.38665 * 120.50232 * 359.66899 * 11 10 9 13 13 C 1.37590 * 120.24689 * 0.02562 * 12 11 10 14 14 C 1.40706 * 120.12815 * 296.03887 * 9 6 4 15 15 C 1.41396 * 120.24102 * 359.97318 * 14 9 6 16 16 H 1.07999 * 120.00433 * 318.21705 * 15 14 9 17 17 C 1.39946 * 119.99662 * 138.21875 * 15 14 9 18 18 N 1.30828 * 120.00183 * 151.71878 * 17 15 14 19 19 Si 1.86798 * 120.00045 * 331.71429 * 17 15 14 20 20 H 1.48504 * 109.47450 * 269.75322 * 19 17 15 21 21 H 1.48500 * 109.47063 * 29.75067 * 19 17 15 22 22 H 1.48504 * 109.47296 * 149.74975 * 19 17 15 23 23 H 1.08997 * 109.46987 * 59.99853 * 1 2 3 24 24 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46953 * 299.99556 * 1 2 3 26 26 H 1.09007 * 109.47134 * 239.99996 * 2 1 3 27 27 H 1.09004 * 109.47136 * 120.00537 * 2 1 3 28 28 H 1.08994 * 109.47247 * 275.61184 * 5 4 3 29 29 H 1.09004 * 109.47139 * 35.61108 * 5 4 3 30 30 H 1.09000 * 109.47310 * 155.60454 * 5 4 3 31 31 H 1.08001 * 119.87354 * 0.02562 * 10 9 6 32 32 H 1.08006 * 119.75074 * 179.69594 * 11 10 9 33 33 H 1.08003 * 119.87476 * 180.02562 * 12 11 10 34 34 H 1.08004 * 120.12961 * 180.02562 * 13 12 11 35 35 H 0.96998 * 119.99898 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4180 1.4590 -0.0006 5 6 4.1487 1.5167 1.2679 6 16 4.2428 1.5245 -1.4350 7 8 5.5538 1.9758 -1.1238 8 8 3.3908 2.1891 -2.3578 9 6 4.4111 -0.1303 -2.0160 10 6 3.8136 -0.5126 -3.1956 11 6 3.9388 -1.8155 -3.6516 12 6 4.6714 -2.7462 -2.9305 13 6 5.2825 -2.3847 -1.7519 14 6 5.1621 -1.0646 -1.2792 15 6 5.7861 -0.6815 -0.0696 16 1 6.2851 0.2736 0.0018 17 6 5.7571 -1.5401 1.0352 18 7 6.7218 -1.5029 1.9181 19 14 4.3410 -2.7393 1.2492 20 1 3.2625 -2.0955 2.0415 21 1 3.8129 -3.1247 -0.0842 22 1 4.8216 -3.9511 1.9604 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 4.1624 2.5436 1.6329 29 1 3.6560 0.8773 2.0004 30 1 5.1712 1.1719 1.1142 31 1 3.2411 0.2041 -3.7656 32 1 3.4625 -2.1080 -4.5757 33 1 4.7627 -3.7586 -3.2954 34 1 5.8529 -3.1110 -1.1920 35 1 6.7015 -2.0977 2.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867155307.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -63.787274 kcal Electronic energy + Delta-G solvation = -22090.428958 eV Core-core repulsion = 18796.052266 eV Total energy + Delta-G solvation = -3294.376692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61678 -38.88952 -38.28663 -36.87791 -35.68873 -34.38270 -32.47771 -31.78936 -31.42881 -27.33258 -26.47244 -23.94564 -23.50559 -22.91864 -20.58942 -19.60685 -19.20219 -18.15694 -17.95981 -17.18578 -16.53991 -16.25324 -16.11562 -15.80777 -15.32880 -15.05938 -14.78766 -14.37338 -14.00832 -13.91456 -13.72146 -13.60522 -13.28592 -13.15702 -13.01083 -12.87245 -12.81630 -12.75301 -12.55067 -12.29436 -12.04929 -11.79749 -11.27945 -11.13161 -11.04248 -10.28719 -9.92022 -9.45478 -9.00112 -6.69746 -0.61836 0.30926 0.77340 1.25917 1.31073 1.38661 1.41709 2.09293 2.44773 2.73646 2.92748 3.28279 3.61553 4.04618 4.19665 4.21756 4.30701 4.35367 4.42202 4.60254 4.62127 4.76893 4.78511 4.89200 4.94611 4.96090 5.00926 5.19757 5.22374 5.37129 5.54579 5.74544 5.84398 6.02371 6.07718 6.31246 6.54448 6.70211 8.03958 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.010729 C = 0.009689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.945754 B = 2609.011415 C = 2889.134349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 O -0.125 6.125 4 N -0.858 5.858 5 C 0.074 3.926 6 S 2.715 3.285 7 O -0.975 6.975 8 O -0.990 6.990 9 C -0.779 4.779 10 C -0.008 4.008 11 C -0.233 4.233 12 C -0.052 4.052 13 C -0.218 4.218 14 C 0.156 3.844 15 C -0.516 4.516 16 H 0.100 0.900 17 C 0.083 3.917 18 N -0.804 5.804 19 Si 0.900 3.100 20 H -0.250 1.250 21 H -0.226 1.226 22 H -0.263 1.263 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 -3.287 -0.344 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 O -0.134 6.134 4 N -0.732 5.732 5 C -0.070 4.070 6 S 2.813 3.187 7 O -0.966 6.966 8 O -0.981 6.981 9 C -0.874 4.874 10 C -0.028 4.028 11 C -0.252 4.252 12 C -0.070 4.070 13 C -0.237 4.237 14 C 0.151 3.849 15 C -0.544 4.544 16 H 0.118 0.882 17 C -0.138 4.138 18 N -0.426 5.426 19 Si 0.720 3.280 20 H -0.174 1.174 21 H -0.149 1.149 22 H -0.188 1.188 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.015 -2.334 -0.413 9.321 hybrid contribution 0.047 -1.383 0.512 1.475 sum -8.968 -3.717 0.099 9.708 Atomic orbital electron populations 1.21750 0.89517 1.04433 1.03988 1.23469 0.98160 0.84988 1.01518 1.90541 1.00064 1.26021 1.96744 1.60015 1.01833 1.89239 1.22126 1.22172 0.97163 1.02818 0.84797 1.00906 0.71862 0.74849 0.71133 1.93518 1.37338 1.81947 1.83841 1.93424 1.68216 1.74381 1.62088 1.30226 1.20649 1.24243 1.12258 1.20706 0.92910 0.96876 0.92310 1.21046 1.07724 0.93249 1.03219 1.21359 0.92877 0.99393 0.93356 1.21505 1.06393 0.97018 0.98830 1.17214 0.85340 0.91362 0.90934 1.19957 1.32056 1.06393 0.95951 0.88233 1.26499 0.96716 0.96162 0.94469 1.69804 1.28256 1.33548 1.11012 0.86346 0.80823 0.79058 0.81813 1.17435 1.14880 1.18758 0.91102 0.88367 0.90536 0.92957 0.92429 0.90900 0.90324 0.88655 0.85600 0.84271 0.84363 0.87516 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 10.28 71.98 0.74 -2.45 16 2 C 0.00 -0.09 7.12 71.98 0.51 0.42 16 3 O -0.13 -4.68 11.04 -32.85 -0.36 -5.04 16 4 N -0.86 -35.09 3.63 -206.54 -0.75 -35.84 16 5 C 0.07 2.83 10.17 127.77 1.30 4.12 16 6 S 2.72 123.46 5.24 -56.49 -0.30 123.16 16 7 O -0.98 -48.96 14.70 -128.00 -1.88 -50.84 16 8 O -0.99 -46.51 16.76 -123.86 -2.08 -48.59 16 9 C -0.78 -35.01 5.45 22.73 0.12 -34.89 16 10 C -0.01 -0.33 9.53 22.22 0.21 -0.12 16 11 C -0.23 -8.24 10.05 22.46 0.23 -8.02 16 12 C -0.05 -1.86 10.02 22.22 0.22 -1.64 16 13 C -0.22 -9.23 6.93 22.73 0.16 -9.07 16 14 C 0.16 7.28 4.68 -21.29 -0.10 7.18 16 15 C -0.52 -25.44 6.24 23.46 0.15 -25.30 16 16 H 0.10 5.46 4.96 -2.91 -0.01 5.44 16 17 C 0.08 3.84 5.15 85.26 0.44 4.27 16 18 N -0.80 -38.08 13.93 21.83 0.30 -37.78 16 19 Si 0.90 34.54 26.83 68.60 1.84 36.38 16 20 H -0.25 -9.02 7.06 99.48 0.70 -8.31 16 21 H -0.23 -8.67 5.63 99.48 0.56 -8.11 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 23 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.82 7.63 -2.38 -0.02 1.80 16 27 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.10 4.11 4.38 -2.39 -0.01 4.10 16 31 H 0.13 4.69 7.33 -2.91 -0.02 4.67 16 32 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.11 4.40 6.99 -2.91 -0.02 4.38 16 35 H 0.30 12.64 8.30 -92.71 -0.77 11.87 16 Total: -1.00 -59.25 302.08 1.71 -57.54 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.95 Total: 26.48 kcal Atomic # 6 Polarization: -69.45 SS G_CDS: 3.98 Total: -65.47 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -0.45 Total: -73.62 kcal Atomic # 8 Polarization: -100.16 SS G_CDS: -4.32 Total: -104.48 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 1.84 Total: 36.38 kcal Atomic # 16 Polarization: 123.46 SS G_CDS: -0.30 Total: 123.16 kcal Total: -59.25 1.71 -57.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867155307.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.244 kcal (2) G-P(sol) polarization free energy of solvation -59.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds