Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00049 * 2 1 4 4 H 1.48494 * 109.47249 * 269.99818 * 3 2 1 5 5 H 1.48491 * 109.47135 * 30.00068 * 3 2 1 6 6 H 1.48505 * 109.46920 * 150.00063 * 3 2 1 7 7 C 1.38705 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99299 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00279 * 0.02562 * 7 2 1 10 10 C 1.35513 * 116.99950 * 185.07043 * 9 7 2 11 11 C 1.38834 * 120.16282 * 354.40948 * 10 9 7 12 12 C 1.38026 * 120.07198 * 180.02562 * 11 10 9 13 13 C 1.38579 * 120.41145 * 0.02562 * 12 11 10 14 14 C 1.37813 * 120.32497 * 359.97438 * 13 12 11 15 15 C 1.39693 * 119.91734 * 359.97438 * 14 13 12 16 16 C 1.47480 * 120.19969 * 180.02562 * 15 14 13 17 17 O 1.21584 * 120.00100 * 180.02562 * 16 15 14 18 18 N 1.34776 * 120.00380 * 359.97438 * 16 15 14 19 19 C 1.38825 * 120.00302 * 180.02562 * 18 16 15 20 20 N 1.32426 * 119.20647 * 359.73496 * 19 18 16 21 21 C 1.32279 * 120.74804 * 179.76034 * 20 19 18 22 22 C 1.38612 * 119.18440 * 0.50232 * 21 20 19 23 23 C 1.38616 * 118.54357 * 359.74785 * 22 21 20 24 24 N 1.32269 * 119.18554 * 0.02562 * 23 22 21 25 25 H 0.96997 * 119.99770 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.96449 * 0.29772 * 11 10 9 27 27 H 1.08010 * 119.79570 * 179.97438 * 12 11 10 28 28 H 1.08003 * 119.83857 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.04229 * 180.02562 * 14 13 12 30 30 H 0.97003 * 119.99602 * 0.02562 * 18 16 15 31 31 H 1.07998 * 120.40456 * 180.25783 * 21 20 19 32 32 H 1.08000 * 120.72764 * 179.77670 * 22 21 20 33 33 H 1.08004 * 120.40807 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2012 0.0001 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5029 0.1078 11 6 3.4553 -3.4402 0.0947 12 6 4.2009 -4.5966 0.2035 13 6 3.5742 -5.8265 0.3259 14 6 2.1986 -5.9080 0.3408 15 6 1.4306 -4.7462 0.2326 16 6 -0.0420 -4.8262 0.2484 17 8 -0.7069 -3.8127 0.1535 18 7 -0.6507 -6.0228 0.3669 19 6 -2.0368 -6.0981 0.3812 20 7 -2.7456 -4.9838 0.2827 21 6 -4.0678 -5.0206 0.2884 22 6 -4.7095 -6.2433 0.4097 23 6 -3.9367 -7.3892 0.5158 24 7 -2.6185 -7.2820 0.4988 25 1 -0.4850 0.8400 -0.0004 26 1 3.9512 -2.4852 0.0037 27 1 5.2796 -4.5427 0.1924 28 1 4.1667 -6.7255 0.4100 29 1 1.7149 -6.8689 0.4368 30 1 -0.1202 -6.8314 0.4422 31 1 -4.6404 -4.1088 0.2035 32 1 -5.7878 -6.3019 0.4207 33 1 -4.4053 -8.3576 0.6113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919991365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = 21.327085 kcal Electronic energy + Delta-G solvation = -21356.367520 eV Core-core repulsion = 17962.530463 eV Total energy + Delta-G solvation = -3393.837057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27824 -41.14639 -39.75736 -38.06646 -36.03144 -34.67261 -34.33569 -32.70621 -31.26775 -30.59824 -27.43650 -25.98824 -25.47319 -24.11296 -23.04851 -21.69891 -20.08047 -19.77441 -18.83697 -18.28877 -17.38148 -16.80035 -16.75426 -16.37527 -16.14445 -15.84115 -15.68939 -15.46379 -15.28181 -14.87291 -14.47026 -14.30034 -14.27925 -13.55725 -13.03286 -12.74096 -12.55097 -12.37446 -12.13195 -12.07384 -11.97834 -11.89310 -11.41621 -10.83943 -10.77929 -9.92646 -9.92564 -9.65825 -9.06941 -8.44776 -6.16363 -0.18533 0.19801 0.26304 0.70640 1.32672 1.44282 1.51898 1.56817 1.99346 2.15516 2.82097 2.95941 3.20550 3.20935 3.39792 3.49841 3.81665 3.96594 4.04777 4.26935 4.29974 4.40938 4.49570 4.61676 4.84428 4.93376 5.05281 5.09442 5.13632 5.44338 5.53566 5.56947 5.67638 5.92788 6.11469 6.15137 6.18339 6.93627 7.15587 7.38218 7.77377 8.75143 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.005451 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.122415 B = 5135.455943 C = 6908.355063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.022 4.022 3 Si 1.023 2.977 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.428 4.428 8 H 0.109 0.891 9 O -0.188 6.188 10 C 0.153 3.847 11 C -0.254 4.254 12 C -0.035 4.035 13 C -0.198 4.198 14 C -0.031 4.031 15 C -0.244 4.244 16 C 0.541 3.459 17 O -0.490 6.490 18 N -0.632 5.632 19 C 0.515 3.485 20 N -0.559 5.559 21 C 0.149 3.851 22 C -0.245 4.245 23 C 0.172 3.828 24 N -0.557 5.557 25 H 0.271 0.729 26 H 0.127 0.873 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.158 0.842 30 H 0.430 0.570 31 H 0.179 0.821 32 H 0.193 0.807 33 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 -15.984 1.410 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.504 4.504 8 H 0.127 0.873 9 O -0.090 6.090 10 C 0.098 3.902 11 C -0.273 4.273 12 C -0.053 4.053 13 C -0.216 4.216 14 C -0.049 4.049 15 C -0.249 4.249 16 C 0.331 3.669 17 O -0.359 6.359 18 N -0.285 5.285 19 C 0.160 3.840 20 N -0.280 5.280 21 C -0.017 4.017 22 C -0.268 4.268 23 C 0.006 3.994 24 N -0.279 5.279 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.175 0.825 28 H 0.184 0.816 29 H 0.176 0.824 30 H 0.272 0.728 31 H 0.196 0.804 32 H 0.210 0.790 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.178 -14.916 1.311 15.020 hybrid contribution -0.602 0.839 -0.049 1.034 sum -1.780 -14.078 1.262 14.246 Atomic orbital electron populations 1.70335 1.08382 1.28605 1.46449 1.26782 0.96734 1.03155 0.95444 0.84550 0.77903 0.74106 0.79331 1.18654 1.19823 1.16996 1.22057 0.92770 0.81642 1.53914 0.87347 1.84167 1.35315 1.12259 1.77244 1.20010 0.91760 0.87267 0.91208 1.21307 0.92032 1.01141 1.12867 1.21485 1.00890 0.91138 0.91793 1.21185 0.93661 0.98649 1.08083 1.21320 0.94742 0.95372 0.93458 1.19042 0.90676 0.93399 1.21829 1.18791 0.88725 0.82459 0.76956 1.91044 1.66103 1.34841 1.43958 1.43062 1.02398 1.11194 1.71868 1.19671 0.86879 0.85793 0.91662 1.68525 1.10304 1.31168 1.18052 1.23717 0.88483 1.00593 0.88889 1.23156 1.04870 0.93133 1.05609 1.23885 0.86552 1.01425 0.87537 1.67899 1.15103 1.24472 1.20419 0.92024 0.85560 0.82492 0.81563 0.82435 0.72843 0.80429 0.78954 0.76229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -59.33 13.67 21.62 0.30 -59.04 16 2 C -0.02 -1.28 5.49 84.85 0.47 -0.82 16 3 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.43 -25.89 9.49 67.93 0.64 -25.25 16 8 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 9 O -0.19 -11.98 7.84 0.99 0.01 -11.98 16 10 C 0.15 7.92 6.66 22.91 0.15 8.07 16 11 C -0.25 -10.75 9.16 22.36 0.20 -10.54 16 12 C -0.04 -1.07 10.03 22.30 0.22 -0.84 16 13 C -0.20 -5.23 10.02 22.25 0.22 -5.01 16 14 C -0.03 -0.94 9.54 22.52 0.21 -0.73 16 15 C -0.24 -10.85 5.89 -19.99 -0.12 -10.97 16 16 C 0.54 26.13 7.72 86.68 0.67 26.80 16 17 O -0.49 -29.85 13.36 16.92 0.23 -29.62 16 18 N -0.63 -23.72 5.35 -316.62 -1.69 -25.41 16 19 C 0.52 19.48 8.38 261.33 2.19 21.67 16 20 N -0.56 -23.74 7.87 -197.74 -1.56 -25.29 16 21 C 0.15 4.52 11.30 84.71 0.96 5.47 16 22 C -0.24 -4.78 10.16 22.45 0.23 -4.55 16 23 C 0.17 3.40 11.30 84.72 0.96 4.36 16 24 N -0.56 -16.09 10.46 -197.74 -2.07 -18.16 16 25 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 26 H 0.13 5.38 5.64 -2.91 -0.02 5.36 16 27 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.16 3.38 6.40 -2.91 -0.02 3.36 16 30 H 0.43 12.13 6.84 -92.71 -0.63 11.50 16 31 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 32 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 33 H 0.22 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -94.04 297.24 4.80 -89.24 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.55 Total: 26.31 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 7.01 Total: 7.67 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -5.02 Total: -127.90 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: 0.23 Total: -41.60 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -94.04 4.80 -89.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919991365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.565 kcal (2) G-P(sol) polarization free energy of solvation -94.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds