Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33014 * 1 3 3 C 1.47069 * 120.00172 * 2 1 4 4 O 1.21625 * 119.99834 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99894 * 180.02562 * 3 2 1 6 6 C 1.39844 * 119.99700 * 185.11423 * 5 3 2 7 7 C 1.39315 * 119.95000 * 214.19609 * 6 5 3 8 8 C 1.38484 * 120.42750 * 179.97438 * 7 6 5 9 9 C 1.37690 * 120.32206 * 0.27646 * 8 7 6 10 10 C 1.40742 * 119.89036 * 359.47607 * 9 8 7 11 11 C 1.41407 * 120.21111 * 180.25137 * 10 9 8 12 12 H 1.07998 * 120.00722 * 205.31543 * 11 10 9 13 13 C 1.39934 * 119.99874 * 25.31834 * 11 10 9 14 14 N 1.30831 * 119.99978 * 16.68276 * 13 11 10 15 15 Si 1.86803 * 119.99883 * 196.69206 * 13 11 10 16 16 H 1.48491 * 109.47295 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47122 * 119.99686 * 15 13 11 18 18 H 1.48500 * 109.46776 * 239.99421 * 15 13 11 19 19 C 1.38265 * 119.94936 * 34.21822 * 6 5 3 20 20 C 1.50698 * 119.99969 * 180.02562 * 2 1 3 21 21 F 1.39902 * 109.47190 * 359.97438 * 20 2 1 22 22 F 1.39898 * 109.47349 * 119.99693 * 20 2 1 23 23 F 1.39898 * 109.47290 * 239.99781 * 20 2 1 24 24 H 1.08000 * 120.00307 * 179.97438 * 1 2 3 25 25 H 1.08008 * 119.99759 * 0.02562 * 1 2 3 26 26 H 0.96991 * 120.00049 * 5.10992 * 5 3 2 27 27 H 1.07992 * 119.78500 * 0.02562 * 7 6 5 28 28 H 1.07995 * 119.83805 * 179.97438 * 8 7 6 29 29 H 1.07999 * 120.05391 * 179.70535 * 9 8 7 30 30 H 0.97003 * 119.99722 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.16467 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0655 1.2736 0.0000 4 8 1.4574 2.3269 -0.0005 5 7 3.4133 1.2736 -0.0005 6 6 4.1125 2.4798 0.1074 7 6 5.3247 2.6432 -0.5595 8 6 6.0251 3.8336 -0.4599 9 6 5.5333 4.8677 0.3047 10 6 4.3074 4.7192 0.9800 11 6 3.7934 5.7786 1.7629 12 1 3.1173 5.5688 2.5785 13 6 4.1607 7.0991 1.4808 14 7 4.6995 7.3958 0.3260 15 14 3.8820 8.4382 2.7530 16 1 3.2626 7.8472 3.9662 17 1 5.1827 9.0579 3.1125 18 1 2.9786 9.4743 2.1912 19 6 3.6000 3.5083 0.8763 20 6 2.0836 -1.3051 -0.0006 21 9 1.1745 -2.3685 -0.0005 22 9 2.8879 -1.3788 -1.1429 23 9 2.8880 -1.3797 1.1416 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 3.8982 0.4369 -0.0757 27 1 5.7203 1.8365 -1.1587 28 1 6.9641 3.9498 -0.9806 29 1 6.0855 5.7925 0.3832 30 1 4.9544 8.3111 0.1306 31 1 2.6604 3.3829 1.3938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144208459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -145.186818 kcal Electronic energy + Delta-G solvation = -21921.797970 eV Core-core repulsion = 17946.590838 eV Total energy + Delta-G solvation = -3975.207133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.40667 -47.94363 -47.81146 -39.90334 -37.33024 -34.60785 -34.08779 -33.04324 -29.84785 -28.38090 -26.35899 -25.32575 -23.67812 -21.14205 -20.64784 -19.90575 -18.92491 -18.68982 -18.08486 -17.63153 -15.78276 -15.44321 -15.24488 -14.91495 -14.85084 -14.64221 -14.41395 -14.27138 -14.16368 -13.99807 -13.98278 -13.33413 -13.10507 -12.85918 -12.20805 -12.01970 -11.73509 -11.39186 -11.12154 -10.71636 -10.51984 -10.39406 -10.24892 -9.78257 -9.65241 -9.24929 -8.92820 -7.46576 -6.95551 -6.73028 -4.34634 0.80934 2.40186 2.65803 2.83555 3.09692 3.15548 3.18816 3.29094 3.43303 3.46647 3.85071 3.96492 4.18637 4.62431 4.68728 5.13615 5.48123 5.64369 5.71087 6.22587 6.38130 6.63967 6.94836 7.01019 7.04558 7.23447 7.47992 7.67973 7.93131 8.04812 8.09753 8.18869 8.49087 8.66313 8.91851 8.96285 10.21718 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.004229 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.362217 B = 6619.334541 C = 7187.833122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 C -0.266 4.266 3 C 0.554 3.446 4 O -0.501 6.501 5 N -0.657 5.657 6 C 0.148 3.852 7 C -0.258 4.258 8 C -0.091 4.091 9 C -0.170 4.170 10 C 0.119 3.881 11 C -0.457 4.457 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.793 5.793 15 Si 0.909 3.091 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.208 4.208 20 C 0.501 3.499 21 F -0.177 7.177 22 F -0.173 7.173 23 F -0.171 7.171 24 H 0.133 0.867 25 H 0.146 0.854 26 H 0.397 0.603 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.280 0.720 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 -13.866 -0.584 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.270 4.270 3 C 0.340 3.660 4 O -0.377 6.377 5 N -0.301 5.301 6 C 0.057 3.943 7 C -0.280 4.280 8 C -0.110 4.110 9 C -0.190 4.190 10 C 0.116 3.884 11 C -0.486 4.486 12 H 0.096 0.904 13 C -0.142 4.142 14 N -0.419 5.419 15 Si 0.733 3.267 16 H -0.184 1.184 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.230 4.230 20 C 0.447 3.553 21 F -0.158 7.158 22 F -0.155 7.155 23 F -0.153 7.153 24 H 0.151 0.849 25 H 0.164 0.836 26 H 0.232 0.768 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.454 -12.955 -0.708 14.074 hybrid contribution 0.270 -0.125 0.308 0.428 sum -5.185 -13.080 -0.400 14.076 Atomic orbital electron populations 1.25111 0.93596 1.05770 0.81266 1.22289 0.97126 0.92055 1.15566 1.17603 0.82602 0.87769 0.78062 1.90908 1.67694 1.30879 1.48192 1.43377 1.05508 1.09692 1.71490 1.17408 0.92884 0.85168 0.98828 1.20056 0.98942 0.99299 1.09670 1.20465 0.98105 0.93273 0.99133 1.21367 0.96867 0.98522 1.02214 1.17488 0.89984 0.90996 0.89924 1.19585 1.24790 0.90376 1.13889 0.90381 1.25904 0.92950 1.00150 0.95190 1.69840 1.31085 1.21018 1.19919 0.86253 0.78851 0.80084 0.81488 1.18399 1.19713 1.19998 1.20927 1.01279 0.95324 1.05437 1.18472 0.77844 0.84872 0.74118 1.93163 1.66918 1.59437 1.96292 1.93236 1.74605 1.96671 1.50945 1.93253 1.74539 1.96669 1.50797 0.84928 0.83629 0.76828 0.89157 0.88883 0.86236 0.90948 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.19 13.71 28.92 0.40 0.21 16 2 C -0.27 -3.44 5.46 -102.86 -0.56 -4.00 16 3 C 0.55 10.07 7.42 -12.68 -0.09 9.97 16 4 O -0.50 -11.00 13.95 5.26 0.07 -10.93 16 5 N -0.66 -12.43 5.19 -10.99 -0.06 -12.49 16 6 C 0.15 3.43 6.26 -83.79 -0.52 2.91 16 7 C -0.26 -5.80 9.97 -39.09 -0.39 -6.19 16 8 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 16 9 C -0.17 -4.46 8.69 -38.84 -0.34 -4.80 16 10 C 0.12 3.27 5.57 -106.85 -0.59 2.68 16 11 C -0.46 -12.46 9.05 -37.74 -0.34 -12.81 16 12 H 0.08 2.07 7.90 -52.49 -0.41 1.66 16 13 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 14 N -0.79 -20.82 10.94 55.55 0.61 -20.21 16 15 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 16 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C -0.21 -5.40 8.39 -38.68 -0.32 -5.73 16 20 C 0.50 5.91 2.81 36.00 0.10 6.01 16 21 F -0.18 -1.81 15.91 2.25 0.04 -1.77 16 22 F -0.17 -2.13 16.30 2.25 0.04 -2.10 16 23 F -0.17 -2.17 16.51 2.25 0.04 -2.13 16 24 H 0.13 0.82 7.04 -52.49 -0.37 0.45 16 25 H 0.15 1.41 7.49 -52.48 -0.39 1.01 16 26 H 0.40 6.37 6.44 -40.82 -0.26 6.11 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.11 2.80 6.46 -52.48 -0.34 2.46 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -30.24 288.12 -5.19 -35.44 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -2.08 Total: 8.35 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -3.16 Total: -12.43 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.55 Total: -32.70 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.24 -5.19 -35.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144208459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.751 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds