Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33014 * 1 3 3 C 1.47069 * 120.00172 * 2 1 4 4 O 1.21625 * 119.99834 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99894 * 180.02562 * 3 2 1 6 6 C 1.39844 * 119.99700 * 185.11423 * 5 3 2 7 7 C 1.39315 * 119.95000 * 214.19609 * 6 5 3 8 8 C 1.38484 * 120.42750 * 179.97438 * 7 6 5 9 9 C 1.37690 * 120.32206 * 0.27646 * 8 7 6 10 10 C 1.40742 * 119.89036 * 359.47607 * 9 8 7 11 11 C 1.41407 * 120.21111 * 180.25137 * 10 9 8 12 12 H 1.07998 * 120.00722 * 205.31543 * 11 10 9 13 13 C 1.39934 * 119.99874 * 25.31834 * 11 10 9 14 14 N 1.30831 * 119.99978 * 16.68276 * 13 11 10 15 15 Si 1.86803 * 119.99883 * 196.69206 * 13 11 10 16 16 H 1.48491 * 109.47295 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47122 * 119.99686 * 15 13 11 18 18 H 1.48500 * 109.46776 * 239.99421 * 15 13 11 19 19 C 1.38265 * 119.94936 * 34.21822 * 6 5 3 20 20 C 1.50698 * 119.99969 * 180.02562 * 2 1 3 21 21 F 1.39902 * 109.47190 * 359.97438 * 20 2 1 22 22 F 1.39898 * 109.47349 * 119.99693 * 20 2 1 23 23 F 1.39898 * 109.47290 * 239.99781 * 20 2 1 24 24 H 1.08000 * 120.00307 * 179.97438 * 1 2 3 25 25 H 1.08008 * 119.99759 * 0.02562 * 1 2 3 26 26 H 0.96991 * 120.00049 * 5.10992 * 5 3 2 27 27 H 1.07992 * 119.78500 * 0.02562 * 7 6 5 28 28 H 1.07995 * 119.83805 * 179.97438 * 8 7 6 29 29 H 1.07999 * 120.05391 * 179.70535 * 9 8 7 30 30 H 0.97003 * 119.99722 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.16467 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0655 1.2736 0.0000 4 8 1.4574 2.3269 -0.0005 5 7 3.4133 1.2736 -0.0005 6 6 4.1125 2.4798 0.1074 7 6 5.3247 2.6432 -0.5595 8 6 6.0251 3.8336 -0.4599 9 6 5.5333 4.8677 0.3047 10 6 4.3074 4.7192 0.9800 11 6 3.7934 5.7786 1.7629 12 1 3.1173 5.5688 2.5785 13 6 4.1607 7.0991 1.4808 14 7 4.6995 7.3958 0.3260 15 14 3.8820 8.4382 2.7530 16 1 3.2626 7.8472 3.9662 17 1 5.1827 9.0579 3.1125 18 1 2.9786 9.4743 2.1912 19 6 3.6000 3.5083 0.8763 20 6 2.0836 -1.3051 -0.0006 21 9 1.1745 -2.3685 -0.0005 22 9 2.8879 -1.3788 -1.1429 23 9 2.8880 -1.3797 1.1416 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 3.8982 0.4369 -0.0757 27 1 5.7203 1.8365 -1.1587 28 1 6.9641 3.9498 -0.9806 29 1 6.0855 5.7925 0.3832 30 1 4.9544 8.3111 0.1306 31 1 2.6604 3.3829 1.3938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144208459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -163.428332 kcal Electronic energy + Delta-G solvation = -21922.588982 eV Core-core repulsion = 17946.590838 eV Total energy + Delta-G solvation = -3975.998144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.31483 -48.81848 -48.75060 -41.43552 -39.12991 -36.34825 -35.23034 -34.80777 -31.79243 -30.14391 -27.37553 -27.20171 -25.07844 -22.94304 -22.35091 -21.14135 -20.08351 -19.61036 -19.43893 -19.17071 -17.53225 -16.94536 -16.68991 -16.52193 -16.21671 -15.97047 -15.57374 -15.39443 -15.18273 -15.03430 -14.89434 -14.87137 -14.70003 -14.19970 -13.90269 -13.61640 -13.22106 -13.01568 -12.82911 -12.60744 -12.23041 -12.04520 -11.60944 -11.41574 -11.37943 -11.06001 -10.75518 -9.42551 -8.80783 -8.64397 -6.38390 -0.16511 0.89589 0.98989 1.37529 1.47166 1.48290 1.53409 1.89983 1.97523 2.21771 2.53553 2.71380 2.86037 3.25560 3.55791 3.71349 4.31605 4.42788 4.56108 4.58300 4.83205 4.92912 5.06185 5.08136 5.17309 5.29710 5.66928 5.79837 6.04174 6.06910 6.29234 6.41161 6.64917 6.89647 6.96487 7.05457 8.33092 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.004229 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.362217 B = 6619.334541 C = 7187.833122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 C -0.297 4.297 3 C 0.552 3.448 4 O -0.549 6.549 5 N -0.655 5.655 6 C 0.153 3.847 7 C -0.253 4.253 8 C -0.089 4.089 9 C -0.195 4.195 10 C 0.090 3.910 11 C -0.499 4.499 12 H 0.068 0.932 13 C 0.036 3.964 14 N -0.824 5.824 15 Si 0.985 3.015 16 H -0.261 1.261 17 H -0.258 1.258 18 H -0.265 1.265 19 C -0.233 4.233 20 C 0.513 3.487 21 F -0.162 7.162 22 F -0.177 7.177 23 F -0.178 7.178 24 H 0.178 0.822 25 H 0.144 0.856 26 H 0.412 0.588 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.289 0.711 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -15.354 -0.906 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 C -0.302 4.302 3 C 0.341 3.659 4 O -0.428 6.428 5 N -0.300 5.300 6 C 0.060 3.940 7 C -0.274 4.274 8 C -0.107 4.107 9 C -0.215 4.215 10 C 0.087 3.913 11 C -0.528 4.528 12 H 0.086 0.914 13 C -0.179 4.179 14 N -0.450 5.450 15 Si 0.805 3.195 16 H -0.185 1.185 17 H -0.183 1.183 18 H -0.190 1.190 19 C -0.254 4.254 20 C 0.458 3.542 21 F -0.144 7.144 22 F -0.158 7.158 23 F -0.160 7.160 24 H 0.195 0.805 25 H 0.162 0.838 26 H 0.249 0.751 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.958 -14.503 -1.044 15.713 hybrid contribution 0.333 0.186 0.322 0.499 sum -5.625 -14.317 -0.722 15.399 Atomic orbital electron populations 1.25592 0.92302 1.07797 0.75190 1.21851 0.97738 0.90134 1.20456 1.18352 0.82160 0.89241 0.76150 1.90886 1.68403 1.33251 1.50216 1.43330 1.06119 1.08874 1.71671 1.17512 0.93217 0.85980 0.97269 1.20468 0.98207 0.99853 1.08852 1.20826 0.99135 0.92737 0.98030 1.21342 0.96944 0.99178 1.04029 1.17841 0.90889 0.91830 0.90762 1.19792 1.26398 0.91921 1.14695 0.91359 1.26759 0.92155 1.01883 0.97088 1.69878 1.31533 1.22183 1.21377 0.85126 0.79312 0.76708 0.78324 1.18484 1.18266 1.19001 1.20892 1.01079 0.96397 1.07064 1.18156 0.77644 0.84609 0.73741 1.93188 1.66367 1.58587 1.96225 1.93230 1.74778 1.96684 1.51131 1.93244 1.74813 1.96697 1.51226 0.80505 0.83799 0.75064 0.85464 0.85741 0.87549 0.89991 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 13.71 66.65 0.91 1.37 16 2 C -0.30 -7.10 5.46 -18.71 -0.10 -7.20 16 3 C 0.55 19.96 7.42 86.56 0.64 20.60 16 4 O -0.55 -24.73 13.95 -4.11 -0.06 -24.78 16 5 N -0.66 -24.49 5.19 -306.92 -1.59 -26.08 16 6 C 0.15 7.12 6.26 38.13 0.24 7.36 16 7 C -0.25 -11.03 9.97 22.59 0.23 -10.80 16 8 C -0.09 -4.11 10.02 22.20 0.22 -3.88 16 9 C -0.20 -10.54 8.69 22.75 0.20 -10.35 16 10 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 11 C -0.50 -28.64 9.05 23.46 0.21 -28.43 16 12 H 0.07 3.87 7.90 -2.91 -0.02 3.85 16 13 C 0.04 1.89 5.16 85.25 0.44 2.33 16 14 N -0.82 -44.39 10.94 21.82 0.24 -44.15 16 15 Si 0.99 39.62 29.59 68.60 2.03 41.65 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 19 C -0.23 -12.61 8.39 22.86 0.19 -12.42 16 20 C 0.51 10.81 2.81 71.24 0.20 11.01 16 21 F -0.16 -2.74 15.91 44.97 0.72 -2.02 16 22 F -0.18 -3.95 16.30 44.97 0.73 -3.22 16 23 F -0.18 -4.19 16.51 44.97 0.74 -3.45 16 24 H 0.18 1.26 7.04 -2.91 -0.02 1.24 16 25 H 0.14 2.44 7.49 -2.91 -0.02 2.42 16 26 H 0.41 12.67 6.44 -92.71 -0.60 12.07 16 27 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 28 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.11 5.93 6.17 -2.91 -0.02 5.91 16 30 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 31 H 0.09 5.01 6.46 -2.91 -0.02 4.99 16 Total: -1.00 -69.29 288.12 6.68 -62.61 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.61 Total: 24.83 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.26 Total: -25.38 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.35 Total: -70.23 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.78 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 2.19 Total: -8.69 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -69.29 6.68 -62.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144208459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.815 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds